[PATCH] gnu: yubico.scm: Rename to security-token.scm.

2016-10-26 Thread Marius Bakke
e.. What do you think? >From 615733b5d0ea6af5cd858f7e258a64a9fb3bc394 Mon Sep 17 00:00:00 2001 From: Marius Bakke <mba...@fastmail.com> Date: Wed, 26 Oct 2016 07:33:24 +0100 Subject: [PATCH] gnu: yubico.scm: Rename to security-token.scm. * gnu/packages/yubico.scm: Delete file. * gnu/packages/security-token.scm: New f

Re: [PATCH] gnu: mupdf: Fix CVE-2016-8674.

2016-10-26 Thread Marius Bakke
00:00 2001 From: Marius Bakke <mba...@fastmail.com> Date: Wed, 26 Oct 2016 06:39:34 +0100 Subject: [PATCH] gnu: mupdf: Modify CVE-2016-8674 patch to apply to 1.9a. The fix from upstream did not apply cleanly due to many context changes. This was adapted by cloning mupdf 1.9a from git and fixing con

Re: [PATCH 4/4] gnu: vlc: Add x265 support.

2016-10-25 Thread Marius Bakke
Efraim Flashner writes: > * gnu/packages/video.scm (vlc)[inputs]: Add x265. I've built vlc, gst-plugins-bad and ffmpeg with these patches and x265 is referenced. Not sure how to test it, but LGTM overall. signature.asc Description: PGP signature

[PATCH] gnu: notmuch: Update to 0.23.1.

2016-10-25 Thread Marius Bakke
If you can read this message, this seems to work for me.. ;) >From afb9160f1968447c318aa0f2508de2ab396ce1ba Mon Sep 17 00:00:00 2001 From: Marius Bakke <mba...@fastmail.com> Date: Tue, 25 Oct 2016 20:10:35 +0100 Subject: [PATCH] gnu: notmuch: Update to 0.23.1. * gnu/packages/patche

Re: [PATCH 0/1] Perl-www-curl: Fix build failure

2016-10-25 Thread Marius Bakke
Leo Famulari writes: > This fixes the build failure of perl-www-curl build on core-updates: > https://hydra.gnu.org/build/1553325/nixlog/2 > > The patch is copied from the upstream bug tracker, but the maintainers > don't seem to have done anything with the patch yet. > >

Re: [PATCH] gnu: gcc-4.9: Update to 4.9.4.

2016-10-24 Thread Marius Bakke
Carlos Sánchez de La Lama writes: > > BTW, is there described somewhere which kind of updates go to > core-updates first? Does everything go first to core-updates? Only packages with a large impact in terms of rebuilds (as calculated by `guix refresh -l `). Obviously gcc

Re: [PATCH] gnu: Add whois.

2016-10-24 Thread Marius Bakke
ng0 writes: > * gnu/packages/networking.scm (whois): New variable. I pushed the updated version of this as 9c798f9036d2d3f90e567052efb06b269c08ed14 with a minor modification to the description. signature.asc Description: PGP signature

Re: [PATCH 0/2] gnu: Add libpcsclite

2016-10-24 Thread Marius Bakke
Mike Gerwitz <m...@gnu.org> writes: > Hey, Marius: > > Thanks for the quick reply. :) Hi again, Sorry for the late reply this time! :) > On Sat, Oct 22, 2016 at 22:16:34 +0100, Marius Bakke wrote: >>> * gnu/packages/gnupg.scm (libpcsclite): New variable. >>

Re: [PATCH 0/2] gnu: Add libpcsclite

2016-10-22 Thread Marius Bakke
Mike Gerwitz writes: > This adds libpcsclite for smartcard support. > > This is my first Guix package, and I surely screwed something up. :) > I'd appreciate any help or criticism you can give. This was not a > trivial change. Hi Mike, Thanks a lot for working on this! The

Re: [PATCH] gnu: Add whois.

2016-10-22 Thread Marius Bakke
ng0 <n...@we.make.ritual.n0.is> writes: > Marius Bakke <mba...@fastmail.com> writes: > >> ng0 <n...@we.make.ritual.n0.is> writes: >> >> >>> I have my uclibc-ng system not booted: When I specify libiconv in the >>> inputs, shouldn't it g

Re: [PATCH] Add iPerf

2016-10-19 Thread Marius Bakke
Benz Schenk <benz.sch...@uzh.ch> writes: > On Tue, 18 Oct 2016 22:37:40 +0100 > Marius Bakke <mba...@fastmail.com> wrote: > >> Benz Schenk <benz.sch...@uzh.ch> writes: >> >> > Hi >> > >> > This is my first patch, it's really stra

Re: [PATCH] Update torsocks to 2.2.0

2016-10-18 Thread Marius Bakke
ng0 writes: > torsocks 2.2.0 has been released. > I changed the method from git to url fetch and removed the patch we > included as it seems to be no longer necessary. Thanks for paying attention to this. I couldn't find a link to the download page at first glance,

Re: [PATCH 4/4] gnu: xapian: Update to 1.4.0.

2016-10-18 Thread Marius Bakke
Leo Famulari <l...@famulari.name> writes: > On Mon, Oct 17, 2016 at 05:55:06PM +0100, Marius Bakke wrote: >> * gnu/packages/search.scm (xapian): Update to 1.4.0. >> [source]: Use https URL. >> [home-page]: Use https URL. >> [arguments]: Remove 'patch-remotet

Re: [PATCH] Add iPerf

2016-10-18 Thread Marius Bakke
Benz Schenk writes: > Hi > > This is my first patch, it's really straight-forward. > But I'm not quite sure about the naming because there's iperf, iperf2 > and iperf3 which are different projects. The original iperf is > abandoned and iperf2 is backwards compatible and still

Re: [PATCH] gnu: Add whois.

2016-10-18 Thread Marius Bakke
ng0 writes: >> * The Debian package is built with HAVE_ICONV=1, should we set that too? > > I can send an updated patch with libiconv in the inputs. This is when > you use a libc which does not provide a (usable) iconv, which is why > Gentoo provides the option to

Re: [PATCH] gnu: Add whois.

2016-10-18 Thread Marius Bakke
ng0 writes: > * gnu/packages/networking.scm (whois): New variable. Thanks! This works for me. I have a couple of remarks that can be added before committing if you agree, no need to send an updated patch. * The source headers seems to indicate that this is GPL2+. *

Re: [PATCH] gnu: Add vim-full.

2016-10-17 Thread Marius Bakke
ng0 <n...@we.make.ritual.n0.is> writes: > Hi, > > thanks for reviewing. > > Marius Bakke <mba...@fastmail.com> writes: > >> ng0 <n...@we.make.ritual.n0.is> writes: >> >>> * gnu/packages/vim.scm (vim-full): New variable. >>> * gnu

Re: [PATCH 2/4] gnu: notmuch: Enable tests.

2016-10-17 Thread Marius Bakke
Leo Famulari <l...@famulari.name> writes: > On Mon, Oct 17, 2016 at 05:55:04PM +0100, Marius Bakke wrote: >> * gnu/packages/patches/notmuch-emacs-25-compatibility-fix.patch: New file. >> * gnu/local.mk (dist_patch_DATA): Register it. >> * gnu/packages/mail.scm (notmu

Re: [PATCH 1/4] gnu: notmuch: Update to 0.23.

2016-10-17 Thread Marius Bakke
Leo Famulari <l...@famulari.name> writes: > On Mon, Oct 17, 2016 at 05:55:03PM +0100, Marius Bakke wrote: >> * gnu/packages/mail.scm (notmuch, python-notmuch): Update to 0.23. >> [home-page]: Use https URL. > > LGTM. Is it possible to use (package-version notmuch) as

Re: [PATCH 3/4] gnu: xapian: Use 'modify-phases'.

2016-10-17 Thread Marius Bakke
Leo Famulari <l...@famulari.name> writes: > On Mon, Oct 17, 2016 at 05:55:05PM +0100, Marius Bakke wrote: >> * gnu/packages/search.scm (xapian)[arguments]: Use 'modify-phases'. > >> + `(#:phases >> + (modify-phases %standard-phases >> +

Re: [PATCH] gnu: Add vim-full.

2016-10-17 Thread Marius Bakke
ng0 writes: > * gnu/packages/vim.scm (vim-full): New variable. > * gnu/packages/patches/vim-8.0.0003.patch: New file. > * gnu/packages/patches/vim-8.0.0004.patch: New file. > * gnu/packages/patches/vim-8.0.0005.patch: New file. > * gnu/local.mk (dist_patch_DATA): Add

[PATCH 4/4] gnu: xapian: Update to 1.4.0.

2016-10-17 Thread Marius Bakke
* gnu/packages/search.scm (xapian): Update to 1.4.0. [source]: Use https URL. [home-page]: Use https URL. [arguments]: Remove 'patch-remotetcp-harness' phase. Replace 'check' phase with a list of custom test targets. --- gnu/packages/search.scm | 22 +++--- 1 file changed, 15

[PATCH 3/4] gnu: xapian: Use 'modify-phases'.

2016-10-17 Thread Marius Bakke
* gnu/packages/search.scm (xapian)[arguments]: Use 'modify-phases'. --- gnu/packages/search.scm | 12 ++-- 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/gnu/packages/search.scm b/gnu/packages/search.scm index 9eb4039..a43abde 100644 --- a/gnu/packages/search.scm +++

[PATCH 0/4] Notmuch and Xapian update.

2016-10-17 Thread Marius Bakke
This brings notmuch and xapian to the latest upstream releases. Unfortunately some Xapian tests had to be excluded. If anyone knows how to make getaddrinfo() work for 127.0.0.1 in the build chroot, I'm all ears. NB notmuch users: You may have to adjust 'notmuch-fcc-dirs' after this. See release

[PATCH 2/4] gnu: notmuch: Enable tests.

2016-10-17 Thread Marius Bakke
* gnu/packages/patches/notmuch-emacs-25-compatibility-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/mail.scm (notmuch)[arguments]: Add verbose make flags. Add phase 'patch-notmuch-lib.el' to fix hard-coded /bin/sh. Add 'prepare-test-environment' phase to

[PATCH 1/4] gnu: notmuch: Update to 0.23.

2016-10-17 Thread Marius Bakke
* gnu/packages/mail.scm (notmuch, python-notmuch): Update to 0.23. [home-page]: Use https URL. --- gnu/packages/mail.scm | 12 ++-- 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm index 47c1549..1cb3ef4 100644 ---

Re: gnu: artanis: Remove implied $(DESTDIR) usage.

2016-10-17 Thread Marius Bakke
Adonay Felipe Nogueira writes: > Oh my! ... Sorry for being careless. I guess I was so happy to finally > fix the problem upstream that I forgot to adapt our recipe accordingly. > > Thanks for testing. :) > > I have made the patch again, and also properly referenced the

Re: [PATCH 03/15] gnu: Add chez-web.

2016-10-16 Thread Marius Bakke
Federico Beffa writes: > From 828438eb009a557cd0be5f0e2a42eebb0d59257d Mon Sep 17 00:00:00 2001 > From: Federico Beffa > Date: Sun, 16 Oct 2016 15:59:49 +0200 > Subject: [PATCH 03/15] gnu: Add chez-web > > * gnu/packages/chez.scm (chez-web): New variable.

Re: [PATCH 09/15] gnu: Add ghc-hmatrix.

2016-10-16 Thread Marius Bakke
Federico Beffa writes: > From 9cbbc66e111c5446f818ce1f9aa8f1bc52300bec Mon Sep 17 00:00:00 2001 > From: Federico Beffa > Date: Sun, 16 Oct 2016 16:25:26 +0200 > Subject: [PATCH 09/15] gnu: Add ghc-hmatrix. > > * gnu/packages/haskell.scm (ghc-hmatrix): New

Re: gnu: artanis: Remove implied $(DESTDIR) usage.

2016-10-16 Thread Marius Bakke
Adonay Felipe Nogueira writes: > My first patch to Guix project, I hope this helps. :) Welcome and thanks for this patch! :) The current artanis package has a bug where the install location is set to "$out/$out/share/guile/site/2.0". This patch fixes that by installing

Re: [PATCH] gnu: gd: Fix CVE-2016-8670.

2016-10-15 Thread Marius Bakke
Kei Kebreau writes: > This patch fixes the gd library's most recent published vulnerability on > the oss-security list. Looks like this was already applied by Leo in e1376e25a755a7368d095b4eb2daf42be9e63b0d.

Re: [PATCH] gnu: Add python-whoosh.

2016-10-15 Thread Marius Bakke
Kei Kebreau writes: > Ricardo Wurmus writes: > >> * gnu/packages/python.scm (python-whoosh, python2-whoosh): New variables. >> --- >> gnu/packages/python.scm | 30 ++ >> 1 file changed, 30 insertions(+) >> >> diff --git

Re: [PATCH]Add ati support to xorg configuration.

2016-10-06 Thread Marius Bakke
Dmitry Nikolaev writes: > Hi. Without this patch I couldn't run X on my Radeon card. Thanks! This looks good to me, but please add a commit message that follows our conventions. Check "git log --grep service" for examples. > Dmitry Nikolaev > From

[PATCH] gnu: wpa-supplicant: Update to 2.6.

2016-10-06 Thread Marius Bakke
None of the patches applied, so I assume they are upstream. Tested locally. Please push if it's good. >From 28a85174650e5602364290f9b7d1259f4148bcf1 Mon Sep 17 00:00:00 2001 From: Marius Bakke <mba...@fastmail.com> Date: Wed, 5 Oct 2016 04:08:46 +0100 Subject: [PATCH] gnu: wpa-s

Re: [PATCH 00/14] Change python-build-system (fixes bug 20765)

2016-10-02 Thread Marius Bakke
On 2 October 2016 19:01:38 BST, Leo Famulari wrote: >On Sun, Oct 02, 2016 at 07:31:01PM +0200, Hartmut Goebel wrote: >> Am 02.10.2016 um 16:24 schrieb Ludovic Courtès: >> > >> >> Subject: [PATCH 2/2] guix: python-build-system: Import setuptools >before >> >> calling

Re: [PATCH 00/14] Change python-build-system (fixes bug 20765)

2016-09-30 Thread Marius Bakke
Hartmut Goebel <h.goe...@crazy-compilers.com> writes: > Am 28.09.2016 um 17:54 schrieb Marius Bakke: >> Or push a branch somewhere? > > Branch is now available at > <https://gitlab.com/htgoebel/guix/tree/python-build-system> Thanks a lot for doing this! After

Re: [PATCH 00/14] Change python-build-system (fixes bug 20765)

2016-09-28 Thread Marius Bakke
Hartmut Goebel writes: > Hi, minor correction: > > Am 28.09.2016 um 15:58 schrieb Hartmut Goebel: >> This series implements what I proposed in >> . >> >> A) For python2 include python2-setuptools as

Re: [PATCH 1/4] gnu: Add python-avro.

2016-09-26 Thread Marius Bakke
Hartmut Goebel <h.goe...@crazy-compilers.com> writes: > Am 25.09.2016 um 23:17 schrieb Marius Bakke: >> +;;; Avro uses a single source repository for all implementations. The >> individual >> +;;; released versions often have missing or incomplete test data, so we &

Re: [PATCH 2/3] gnu: Add python-pyxb.

2016-09-26 Thread Marius Bakke
Ben Woodcroft <b.woodcr...@uq.edu.au> writes: > On 24/09/16 13:15, Marius Bakke wrote: >> Ben Woodcroft <b.woodcr...@uq.edu.au> writes: >> >>>> Htslib is propagated because it >>>> is included by the installed samtools and bcftools headers; at le

[PATCH 2/4] gnu: Add python-sphinx-bootstrap-theme.

2016-09-25 Thread Marius Bakke
* gnu/packages/python.scm (python-sphinx-bootstrap-theme, python2-sphinx-bootstrap-theme): New variables. --- gnu/packages/python.scm | 28 1 file changed, 28 insertions(+) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 688a5d4..4b8caea 100644

[PATCH 4/4] gnu: Add python2-pbcommand.

2016-09-25 Thread Marius Bakke
* gnu/packages/bioinformatics.scm (python2-pbcommand): New variable. --- gnu/packages/bioinformatics.scm | 50 + 1 file changed, 50 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 1bf91a9..9343cc6 100644

[PATCH 1/4] gnu: Add python-avro.

2016-09-25 Thread Marius Bakke
* gnu/packages/serialization.scm (avro-version): New variable (private). (avro-source): New variable (private). (python-avro, python2-avro): New variables. --- gnu/packages/serialization.scm | 50 ++ 1 file changed, 50 insertions(+) diff --git

[PATCH 3/4] gnu: Add python-sphinx-argparse.

2016-09-25 Thread Marius Bakke
* gnu/packages/python.scm (python-sphinx-argparse, python2-sphinx-argparse): New variables. --- gnu/packages/python.scm | 45 + 1 file changed, 45 insertions(+) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 4b8caea..bb28363

Re: Zipped Python .egg-files

2016-09-25 Thread Marius Bakke
Hartmut Goebel writes: > Hi, > > I just packaged a Python package and found was generating a zipped > .egg-file - which is not that bad, since this saved space. > > But: This zip-file does include recent time-stamps. > > I assume this is wrong, isn't it? Can

Re: [PATCH 2/3] gnu: Add python-pyxb.

2016-09-23 Thread Marius Bakke
Ben Woodcroft writes: >> Htslib is propagated because it >> is included by the installed samtools and bcftools headers; at least one >> of pysams dependencies failed to build when it was a regular input. > Ah, I see. Can this be avoided with patchelf? I don't think so.

Re: [PATCH 2/3] gnu: Add python-pyxb.

2016-09-23 Thread Marius Bakke
Marius Bakke <mba...@fastmail.com> writes: > Ben Woodcroft <b.woodcr...@uq.edu.au> writes: > >>> >>>> Also, I notice that pysam bundles htslib, bcftools and samtools C code. >>>> Hopefully it should be straightforward enough to remove htslib a

Re: [PATCH 2/3] gnu: Add python-pyxb.

2016-09-23 Thread Marius Bakke
tch below. Cheers! >From eaa38fb4174997f6282ff7d278a6aa4153b75bcf Mon Sep 17 00:00:00 2001 From: Marius Bakke <mba...@fastmail.com> Date: Fri, 16 Sep 2016 18:05:15 +0100 Subject: [PATCH 1/7] gnu: python-pysam: Update to 0.9.1.4. * gnu/packages/bioinformatics.scm (python-pysam, python

Re: [PATCH] gnu: boost: Update to 1.61.0.

2016-09-22 Thread Marius Bakke
Andreas Enge writes: > On Wed, Sep 21, 2016 at 06:11:31PM +0200, Andreas Enge wrote: >> boost has quite a few dependencies, as Ricardo already pointed out, and in my >> experience tends to be a bit fragile. So maybe the best option would be to >> create a boost-update branch and

Re: [PATCH 2/3] gnu: Add python-pyxb.

2016-09-22 Thread Marius Bakke
, and also enabled tests since I was reading the build system anyway. Samtools and bcftools does not seem possible to un-bundle at this time, but htslib was straightforward. Enabling tests required packaging bcftools as well. I've attached the full patch series below. The first three commits are unchan

Re: [PATCH 2/3] gnu: Add python-pyxb.

2016-09-21 Thread Marius Bakke
Ben Woodcroft <b.woodcr...@uq.edu.au> writes: > Hi again, > > > On 20/09/16 16:34, Ben Woodcroft wrote: >> Oops, forgot to cc the list. >> >> >> On 20/09/16 16:02, Ben Woodcroft wrote: >>> Hi Marius, >>> >>>

[PATCH 2/3] gnu: Add python-pyxb.

2016-09-17 Thread Marius Bakke
/packages/xml.scm @@ -13,6 +13,7 @@ ;;; Copyright © 2016 Jan Nieuwenhuizen <jann...@gnu.org> ;;; Copyright © 2016 ng0 <n...@we.make.ritual.n0.is> ;;; Copyright © 2016 Tobias Geerinckx-Rice <m...@tobias.gr> +;;; Copyright © 2016 Marius Bakke <mba...@fastmail.com> ;;; ;;;

[PATCH 3/3] gnu: python2-pbcore: Update to 1.2.10.

2016-09-17 Thread Marius Bakke
* gnu/packages/bioinformatics.scm (python2-pbcore): Update to 1.2.10. [propagated-inputs]: New field. Add python2-pyxb. --- gnu/packages/bioinformatics.scm | 6 -- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm

[PATCH 1/3] gnu: python-pysam: Update to 0.9.1.4.

2016-09-17 Thread Marius Bakke
* gnu/packages/bioinformatics.scm (python-pysam, python2-pysam): Update to 0.9.1.4. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 39a420a..cfd098c 100644 ---

[PATCH 0/3] gnu: python2-pbcore: Update to 1.2.10.

2016-09-17 Thread Marius Bakke
These patches are necessary to update pbcore to the latest release. I've verified that all dependents of pysam and pbcore builds fine. This is part of an effort to package the PacBio GenomicConsensus tools.

Re: [PATCH 1/3] gnu: Add python-pytest-pep8.

2016-09-14 Thread Marius Bakke
Leo Famulari <l...@famulari.name> writes: > On Sun, Sep 11, 2016 at 03:07:35PM +0100, Marius Bakke wrote: >> * gnu/packages/python.scm (python-pytest-pep8, python2-pytest-pep8): New >> variables. > > Overall LGTM... > >> +(description "Pytest plugin

Re: [PATCH] gnu: Add mcelog.

2016-09-14 Thread Marius Bakke
Tobias Geerinckx-Rice <m...@tobias.gr> writes: > Marius, > > On 14/09/16 17:19, Marius Bakke wrote: >> Another thing, I think the snippet should be moved to a phase, as AFAIK >> origin snippets should be reserved for removing unwanted files, or for >> reprod

Re: [PATCH] gnu: Add mcelog.

2016-09-14 Thread Marius Bakke
Danny Milosavljevic writes: > DESTDIR is a feature which lets you install into a tempdir. The idea > is that you install it all there and then atomically replace the > ORIGINAL version at the non-DESTDIR location. Oops, I meant DOCDIR! Sorry for the confusion! >> >> +

Re: [PATCH] gnu: Add mcelog.

2016-09-14 Thread Marius Bakke
Tobias Geerinckx-Rice <m...@tobias.gr> writes: > On 14/09/16 15:45, Marius Bakke wrote: >> It's not visible in the cgit interface, but it actually seems to >> support normal snapshot downloads: >> https://git.kernel.org/cgit/utils/cpu/mce/mcelog.git/snapshot/v14

Re: [PATCH] gnu: Add mcelog.

2016-09-14 Thread Marius Bakke
Tobias Geerinckx-Rice writes: > * gnu/packages/linux.scm (mcelog): New variable. Thanks! > --- > gnu/packages/linux.scm | 41 + > 1 file changed, 41 insertions(+) > > diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm > index

[PATCH 1/3] gnu: Add python-pytest-pep8.

2016-09-11 Thread Marius Bakke
* gnu/packages/python.scm (python-pytest-pep8, python2-pytest-pep8): New variables. --- gnu/packages/python.scm | 33 + 1 file changed, 33 insertions(+) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 8b9273c..21eda38 100644 ---

[PATCH 3/3] gnu: Add python-natsort.

2016-09-11 Thread Marius Bakke
* gnu/packages/python.scm (python-natsort, python2-natsort): New variables. --- gnu/packages/python.scm | 49 + 1 file changed, 49 insertions(+) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index bd70cb6..f8e25d4 100644 ---

[PATCH 2/3] gnu: Add python-pytest-flakes.

2016-09-11 Thread Marius Bakke
* gnu/packages/python.scm (python-pytest-flakes, python2-pytest-flakes): New variables. --- gnu/packages/python.scm | 42 ++ 1 file changed, 42 insertions(+) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 21eda38..bd70cb6 100644 ---

Re: [PATCH] gnu: Add python-cachecontrol.

2016-09-10 Thread Marius Bakke
Ben Woodcroft writes: > Hi Marius, thanks for the patch. > > I added a 'python2-variant' line and pushed as 'b30565b'. *facepalm* thanks. Here I was wondering why my next patches didn't build for python2. You may want to do the same for "python-freezegun" above. Btw, it

Re: [PATCH] gnu: Add dlib.

2016-09-10 Thread Marius Bakke
Marius Bakke <mba...@fastmail.com> writes: > Leo Famulari <l...@famulari.name> writes: > >> Changing the subject, you could disable the tests per-architecture. Look >> for uses of current-target-system and current-system for usage examples. >> But

[PATCH] gnu: Add python-cachecontrol.

2016-09-10 Thread Marius Bakke
>From e924847f7f1b226b7abe2dcf176d83b9ae2852d5 Mon Sep 17 00:00:00 2001 From: Marius Bakke <mba...@fastmail.com> Date: Sat, 10 Sep 2016 11:19:37 +0100 Subject: [PATCH] gnu: Add python-cachecontrol. * gnu/packages/python.scm (python-cachecontrol, python2-cachecontrol): New variables.

Re: [PATCH] gnu: Add schismtracker.

2016-09-10 Thread Marius Bakke
Kei Kebreau writes: > For those who love making tracks, X11 or not! > > If someone could look over this (and build it, please!), that would be > nice. :-) Thanks for this package! See comments below. > From 91dbcb5c61de4b4b45f85b3bad8cf9e713c564b0 Mon Sep 17 00:00:00 2001

Re: How to use "every"?

2016-09-09 Thread Marius Bakke
Danny Milosavljevic writes: > Hi, > > how do I use "every" in a guix package declaration? > > When I add #:modules (sfri sfri-1) I get a message that guix-build is > undefined (?). I think when setting #:modules, you also have to specify the "expected" ones, i.e. it will

Re: [PATCH] gnu: Add seqtk.

2016-09-09 Thread Marius Bakke
Marius Bakke <mba...@fastmail.com> writes: > The program seems to bundle {khash,kseq}.h from htslib. Could you try > replacing them with the files directly from htslib? There are quite a > few examples of doing this already in bioinformatics.scm. The released version bundles a

Re: [PATCH] gnu: Add seqtk.

2016-09-09 Thread Marius Bakke
Ben Woodcroft writes: > Well, despite the lightness of my touch, it seems the licensing is in now in > order. I've updated the package, here's an updated patch. Better? I don't think this was intended to be a commit message? :) The program seems to bundle

Re: [PATCH] gnu: Add dlib.

2016-09-09 Thread Marius Bakke
s on a per-arch basis. There may be others on MIPS failing after the timeout, but extending the list should be obvious. Thanks for your patience! >From 331d291cabcb5d17d0284414cae1f2ac5c32736a Mon Sep 17 00:00:00 2001 From: Marius Bakke <mba...@fastmail.com> Date: Tue, 23 Aug 2016 21:17:14

Re: [PATCH] gnu: Add threadingbuildingblocks.

2016-09-08 Thread Marius Bakke
ng0 writes: > +(arguments > + `(;; XXX: make 'check' is run with 'make all', however the 'all' phase > takes > + ;; 30+ minutes on a AMD FX-4300 Quad-Core Processor buildmachine. > + #:tests? #f 30 minutes isn't bad, we have packages that takes

Re: [PATCH] gnu: Add mash.

2016-09-08 Thread Marius Bakke
Leo Famulari <l...@famulari.name> writes: > On Thu, Sep 01, 2016 at 11:00:39AM +0100, Marius Bakke wrote: >> I had these in inputs initially and was surprised to see no references. >> Both seems to be compiled into the final program[0]: when running "mash >> info&q

Re: [PATCH]: opensmtpd, opensmtpd-extras, libasr.

2016-09-08 Thread Marius Bakke
ng0 writes: > From 30c8260a039d4c8d7cddbfd92341afa65577d680 Mon Sep 17 00:00:00 2001 > From: ng0 > Date: Tue, 6 Sep 2016 17:10:18 + > Subject: [PATCH 1/3] gnu: Add libasr. > > * gnu/packages/web.scm (libasr): New variable. Nice! > --- >

Re: [PATCH 1/1] gnu: Add acme-client.

2016-09-03 Thread Marius Bakke
Leo Famulari <l...@famulari.name> writes: > On Sat, Sep 03, 2016 at 11:32:20AM +0100, Marius Bakke wrote: >> Many distros prefix OpenBSD projects with ambigous names with >> "openbsd-". E.g. "openbsd-netcat", "openbsd-ntpd" etc. We don't appear

Re: [PATCH] gnu: Add libicns

2016-09-03 Thread Marius Bakke
Brendan Tildesley <brendan.tildes...@openmailbox.org> writes: > On 2016-09-03 22:38, Marius Bakke wrote: >> Marius Bakke <mba...@fastmail.com> writes: >> >>> Additionally this package bundles "m4" even if it doesn't use it. Can >>> you re

Re: [PATCH 1/1] gnu: Add acme-client.

2016-09-03 Thread Marius Bakke
Andreas Enge writes: > On Fri, Sep 02, 2016 at 02:50:28PM -0400, Leo Famulari wrote: >> On Fri, Sep 02, 2016 at 08:01:55PM +0200, Hartmut Goebel wrote: >> > Am 02.09.2016 um 16:49 schrieb Leo Famulari: >> > > +(name "acme-client") >> > I strongly suggest using a different

Re: [PATCH] gnu: Add libicns

2016-09-03 Thread Marius Bakke
Brendan Tildesley writes: > From 64ca4155a754a93b26a1002185950f49469197f3 Mon Sep 17 00:00:00 2001 > From: Brendan Tildesley > Date: Sat, 3 Sep 2016 05:53:56 +1000 > Subject: [PATCH] gnu: Add libicns > > *

Re: [PATCH v2] gnu: Add python-odfpy.

2016-09-02 Thread Marius Bakke
Alex Kost <alez...@gmail.com> writes: > Marius Bakke (2016-09-01 18:41 +0300) wrote: > >> From f1bccf9bf26088107b6fec31eece30676d5a362f Mon Sep 17 00:00:00 2001 >> From: Marius Bakke <mba...@fastmail.com> >> Date: Wed, 17 Aug 2016 17:45:24 +0100 >&

[PATCH v2] gnu: Add python-odfpy.

2016-09-01 Thread Marius Bakke
>From f1bccf9bf26088107b6fec31eece30676d5a362f Mon Sep 17 00:00:00 2001 From: Marius Bakke <mba...@fastmail.com> Date: Wed, 17 Aug 2016 17:45:24 +0100 Subject: [PATCH] gnu: Add python-odfpy. * gnu/packages/python.scm (python-odfpy, python2-odfpy): New variables. --- gnu/packages/python

Re: [PATCH] gnu: Add mash.

2016-09-01 Thread Marius Bakke
Leo Famulari writes: >> + (add-after 'unpack 'fix-includes >> + (lambda _ >> + (substitute* '("src/mash/Sketch.cpp" >> "src/mash/CommandFind.cpp") >> + (("^#include \"kseq\\.h\"") >> +"#include \"htslib/kseq.h\""))

Re: [PATCH] gnu: rofi: Update to 1.2.0.

2016-08-31 Thread Marius Bakke
> Done and done! New patches attached. Oops, forgot to refresh my local branch. Here are the actual new patches. >From e1606ba7814ff218a5670aab22b57686b71f2922 Mon Sep 17 00:00:00 2001 From: Marius Bakke <mba...@fastmail.com> Date: Wed, 31 Aug 2016 15:37:18 +0100 Subject: [PATCH 1

Re: [PATCH] gnu: rofi: Update to 1.2.0.

2016-08-31 Thread Marius Bakke
definition. Good catch! >> + (uri (string-append >> + >> "https://github.com/Airblader/xcb-util-xrm/releases/download; > > Also this line a bit too long :) Done and done! New patches attached. >From 002e487185df0f6c5ad38c297ee77c9d1

[PATCH] gnu: rofi: Update to 1.2.0.

2016-08-31 Thread Marius Bakke
the convention of the other xcb-util-* libraries. Disclaimer: untested, apart from building with rounds=2. >From 002e487185df0f6c5ad38c297ee77c9d1150841a Mon Sep 17 00:00:00 2001 From: Marius Bakke <mba...@fastmail.com> Date: Wed, 31 Aug 2016 15:37:18 +0100 Subject: [PATCH 1/2] gnu: Add xcb

Re: [PATCH] gnu: slim: Move to display-managers.scm.

2016-08-31 Thread Marius Bakke
David Craven writes: > Are you packaging lightdm? I started packaging lightdm before sddm. > But then I realized that it doesn't support (and probably never will) > wayland sessions. Looks to me like another we are ubuntu and we are > doing our own thing kind of project... ;-)

[PATCH] gnu: slim: Move to display-managers.scm.

2016-08-31 Thread Marius Bakke
Hi, This change is to make room for SDDM and other display managers such as lightdm. I did not add a copyright line as I consider "git mv" a trivial operation. >From a7e59cb154bd11e7ca04f68753982b21bef22b10 Mon Sep 17 00:00:00 2001 From: Marius Bakke <mba...@fastmail.com> Dat

Re: [PATCH] gnu: Add gzstream.

2016-08-31 Thread Marius Bakke
Eric Bavier <ericbav...@openmailbox.org> writes: > Thanks for the patch! Comments below: > > On Tue, 30 Aug 2016 19:17:14 +0100 > Marius Bakke <mba...@fastmail.com> wrote: > >> From 5e96b895c1ed77a6bfdcbe5c6dbd68220fd5a8dc Mon Sep 17 00:00:00 2001 >> Fr

Re: [PATCH] gnu: Add praat

2016-08-30 Thread Marius Bakke
Brendan Tildesley writes: > This marks my first attempt at writing a package definition for Guix. > Please assume it is broken since I still don't know what I'm doing, and > forgive me if you need to school me on things written in the manual. If > someone on

[PATCH] gnu: Add gzstream.

2016-08-30 Thread Marius Bakke
>From 5e96b895c1ed77a6bfdcbe5c6dbd68220fd5a8dc Mon Sep 17 00:00:00 2001 From: Marius Bakke <m.ba...@warwick.ac.uk> Date: Fri, 12 Aug 2016 02:29:51 +0100 Subject: [PATCH 1/1] gnu: Add gzstream. * gnu/packages/compression.scm (gzstream): New variable. --- gnu/packages/compression

[PATCH] gnu: Add mash.

2016-08-30 Thread Marius Bakke
>From 2097408c8e94d10423d4a156caa5298d6dcb Mon Sep 17 00:00:00 2001 From: Marius Bakke <mba...@fastmail.com> Date: Tue, 30 Aug 2016 18:49:21 +0100 Subject: [PATCH 1/1] gnu: Add mash. * gnu/packages/bioinformatics.scm (mash): New variable. --- gnu/packages/bioinformatics

Re: [PATCH] gnu: Add dlib.

2016-08-30 Thread Marius Bakke
Marius Bakke <mba...@fastmail.com> writes: > Leo Famulari <l...@famulari.name> writes: > >> On Wed, Aug 24, 2016 at 11:26:28AM +0100, Marius Bakke wrote: >>> There are a couple of things going on in this thread: >>> >>> 1. Segfault

Re: [PATCH] gnu: Add ola

2016-08-26 Thread Marius Bakke
> 2 files changed, 4 insertions(+), 6 deletions(-) > gnu/local.mk | 1 + > gnu/packages/ola.scm | 9 +++-- Perhaps this could be added to something like automation.scm? Or iot.scm? > +(synopsis "Framework for controlling entertainment lighting equipment") > +(description "The

Re: [PATCH] gnu: Add capnproto.

2016-08-25 Thread Marius Bakke
Alex Vong writes: >> PS. regarding the man page, I believe Debian mostly generated this >> page from the capnp tool's help text. I'd accept a patch to >> c++/src/kj/main.c++ which adds some code to generate man XML format >> directly, so that we don't have to maintain the

Re: [PATCH] gnu: Add capnproto.

2016-08-25 Thread Marius Bakke
Kenton Varda writes: > Hi, Cap'n Proto upstream author here. Noticed this thread in a Google > search, thought I'd comment. > > To shed some light on the googletest situation: > > The googletest maintainers have deemed that googletest should never > ever be system-installed,

Re: [PATCH] gnu: Add dlib.

2016-08-24 Thread Marius Bakke
Leo Famulari <l...@famulari.name> writes: > On Wed, Aug 24, 2016 at 11:26:28AM +0100, Marius Bakke wrote: >> There are a couple of things going on in this thread: >> >> 1. Segfault on x86_64. This seems to have been resolved simply by >> updating OpenB

Re: GuixSD 0.11.0 Install

2016-08-24 Thread Marius Bakke
David Craven writes: >> (device "my-root") > >> (device "my-boot") > > device should be a path to the device node and should look something > like /dev/sda1 and /dev/sda2. > >> (title 'label) > >> (title 'label) > > remove these (title 'label) instructs the boot routine to look

Re: [PATCH] gnu: Add dlib.

2016-08-24 Thread Marius Bakke
Marius Bakke <mba...@fastmail.com> writes: >> Without OpenBLAS dlib will use an internal BLAS implementation. I'm >> fairly certain that will at least fix the crash on x86_64, which was >> a segfault in libopenblasp-r0.2.15.so when we had LAPACK in inputs, but >>

Re: [PATCH] gnu: Add dlib.

2016-08-23 Thread Marius Bakke
> Without OpenBLAS dlib will use an internal BLAS implementation. I'm > fairly certain that will at least fix the crash on x86_64, which was > a segfault in libopenblasp-r0.2.15.so when we had LAPACK in inputs, but > seems to consistently trigger on Hydra regardless. > > I got busy this weekend,

Re: [PATCH] gnu: Add capnproto.

2016-08-23 Thread Marius Bakke
Leo Famulari <l...@famulari.name> writes: > On Sat, Aug 20, 2016 at 01:22:30PM +0100, Marius Bakke wrote: >> Subject: [PATCH] gnu: Add capnproto. >> >> * gnu/packages/serialization.scm (capnproto): New variable. > > Thanks, pushed as 557d3328! Cheers! > By t

Re: [PATCH] gnu: Add dlib.

2016-08-22 Thread Marius Bakke
Ben Woodcroft <b.woodcr...@uq.edu.au> writes: > On 21/08/16 16:17, Leo Famulari wrote: >> On Fri, Aug 19, 2016 at 11:52:37AM +0100, Marius Bakke wrote: >>> Leo Famulari <l...@famulari.name> writes: >>> >>>> I pushed the patch as 5f0ff6a9e. Hop

Re: [PATCH] gnu: Add capnproto.

2016-08-20 Thread Marius Bakke
Leo Famulari <l...@famulari.name> writes: > On Fri, Aug 19, 2016 at 06:06:24PM -0400, Leo Famulari wrote: >> On Sun, Aug 14, 2016 at 07:16:22PM +0100, Marius Bakke wrote: >> > Leo Famulari <l...@famulari.name> writes: >> > >> > > On Sat, A

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