Re: [Paraview] Problem with paraview and Protocol Buffer version

[Artem Bodrin]

I have described another possible solution, if you build a ParaView from 
sources, in comment to issue mentioned above:
https://gitlab.kitware.com/paraview/paraview/issues/17751 


Copying it here: 
Another possible solution for those who builds a ParaView from sources:
Enable VTK_USE_SYSTEM_PROTOBUF option when configuring with cmake. 

cmake -DCMAKE_PREFIX_PATH=/home/bodrin/Qt5.10.0/5.10.0/gcc_64_lib/cmake 
-DVTK_USE_SYSTEM_PROTOBUF=ON ...

Not need to remove something or else. Make sure you have protobuf-compiler and 
libprotobuf-dev packages installed from repository.
Perform a clean build or remove generated vtkPVMessage.pb.cc and 
vtkPVMessage.pb.h

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Re: [Paraview] Problem with paraview and Protocol Buffer version

[Artem Bodrin]

Hello everyone,

so i did some research and ldd shows that platformthemes/libqgtk3.so is linked 
to libprotobuf.so itself. Actually, does not matter of which version, not 2.3.0 
and this is essential. I used Qt 5.10.0 binary distribution.

To make ParaView work just remove that libqgtk3.so and it will run smoothly. No 
need to patch anything or rebuild. Just make the qt libs do not load that theme 
library.

The "good way" solution is to update VTK protobuf to something fresh. 
Rebuilding a platform theme part of Qt with VTK protobuf library does not worth 
time spent on it. IMHO, of course :-)


> 14 февр. 2018 г., в 5:59, Mathieu Westphal  
> написал(а):
> 
> Hello
> 
> Switching to a downloaded version of Qt (with the patch cory mentionned) 
> instead of using your package manager's Qt should do the trick.
> 
> Best,
> 
> Mathieu Westphal
> 

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Re: [Paraview] Problem with paraview and Protocol Buffer version

[Mathieu Westphal]

Hello

Switching to a downloaded version of Qt (with the patch cory mentionned)
instead of using your package manager's Qt should do the trick.

Best,

Mathieu Westphal

On Tue, Feb 13, 2018 at 9:18 PM, Daniel Vogler  wrote:

> Hi Cory, dear Artem,
>
> Thanks for the mails. Regarding the issue Cory sent.
>
>
> When doing the following:
>
> I moved libqgtk2.so (not libqgtk3.so in my case) from
> /opt/Qt/5.9.0/gcc_64/plugins/platformthemes
>
> and commented _all_ lines in /opt/Qt/5.9/gcc_64/lib/cmake/Qt5Gui/Qt5Gui_
> QGtk3ThemePlugin.cmake
>
> I then rebuild paraview (build succeeds) but when I try to execute
>
> user:~/software/paraview_bin$ ./bin/paraview
> libprotobuf FATAL /home/user/software/paraview/ThirdParty/protobuf/
> vtkprotobuf/src/google/protobuf/stubs/common.cc:62] This program requires
> version 2.6.0 of the Protocol Buffer runtime library, but the installed
> version is 2.3.0.  Please update your library.  If you compiled the program
> yourself, make sure that your headers are from the same version of Protocol
> Buffers as your link-time library.  (Version verification failed in
> "/build/mir-O8_xaj/mir-0.26.3+16.04.20170605/obj-x86_64-
> linux-gnu/src/protobuf/mir_protobuf.pb.cc".)
> Aborted
>
>
> I still have no success. I still have other version of Qt installed (also
> in opt) and did not uninstall "qt5-gtk-platformtheme" as suggested by Timo
> Oster in the thread you sent. Could any of this be the problem? I am
> hesitant to uninstall qt5-gtk-platformtheme as I'm not sure if that'll give
> me another conflict.
>
> Did I forget anything?
>
> Daniel
>
>
>
> On 13.02.2018 14:33, Cory Quammen wrote:
>
> Unfortunately, this is a known issue on Ubuntu 16.04.
>
> https://gitlab.kitware.com/paraview/paraview/issues/17751
>
>
> On Tue, Feb 13, 2018 at 2:29 PM, Artem Bodrin 
> wrote:
>
>> Hello, Daniel.
>> I have encountered the same trouble as you, Linux Mint (based on ubuntu
>> 16.04). I did not seek for a solution yet (no need for linux version right
>> now), but the answer is in the error output. If you inspect  the 3rd party
>> protobuf bundled with ParaView VTK submodule, then you can see that
>> original version used by VTK is 2.3.0
>> So I think, that during compilation it uses the system headers from
>> ubuntu (which is 2.6.1), but links on internal VTK protobuf library which
>> is 2.3.0.
>> My guessing is - remove dev package of protobuf from system and recompile
>> again, it might help.
>>
>>
>> > 13 февр. 2018 г., в 22:03, Daniel Vogler  написал(а):
>> >
>> > Dear all,
>> >
>> > I am having trouble building Paraview 5.2.0 (This version or older is
>> required for a separate plug-in). Other installations of paraview (not
>> compiled from source) work fine.
>> >
>> > I run Ubuntu 16.04 LTS. I check out the paraview 5.2.0 release and
>> installed Qt5.6.3 (also tried 5.6 and 5.7 because I had trouble with Qt
>> during the paraview build earlier) in a separate directory. I have my
>> (empty) build directory paraview_bin and paraview 5.2.0 source in
>> /home/user/software/paraview_bin and /home/user/software/paraview
>> respectively.
>> >
>> > - export PATH=/opt/Qt/5.6.3/gcc_64/:$PATH
>> >
>> > - ccmake -D PARAVIEW_QT_VERSION:STRING=5 /path/to/paraview
>> >
>> > - BUILD_TESTING --> OFF
>> >
>> > - generation and make completes
>> >
>> > The build works fine, but when I try to execute I get a protobuf error
>> >
>> >
>> > user:~/software/paraview_bin$ ./bin/paraview
>> > libprotobuf FATAL /home/user/software/paraview/T
>> hirdParty/protobuf/vtkprotobuf/src/google/protobuf/stubs/common.cc:62]
>> > This program requires version 2.6.0 of the Protocol Buffer runtime
>> library, but the installed version is 2.3.0.
>> > Please update your library.
>> > If you compiled the program yourself, make sure that your headers are
>> from the same version of Protocol Buffers as your link-time library.
>> > (Version verification failed in "/build/mir-O8_xaj/mir-0.26.3+
>> 16.04.20170605/obj-x86_64-linux-gnu/src/protobuf/mir_protobuf.pb.cc".)
>> > Aborted
>> >
>> > although my protoc version seems fine
>> >
>> > user:~/software/paraview_bin$ protoc --version
>> > libprotoc 2.6.1
>> >
>> > I have tried uninstalling and reinstalling protoc and libprotobuf as
>> well as reinstalling Qt afterwards, but can not figure out this error.
>> >
>> > Any suggestions?
>> >
>> > Thanks a bunch,
>> >
>> > Dan
>> >
>>
>> ___
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Please keep messages on-topic and check the ParaView Wiki at:
>> http://paraview.org/Wiki/ParaView
>>
>> Search the list archives at: http://markmail.org/search/?q=ParaView
>>
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>>
>
>
>
> --
> Cory Quammen
> Staff R&D Engineer
> Kitware, Inc.
>
>
>
> ___
> Powered by www.kitware.com

Re: [Paraview] Problem with paraview and Protocol Buffer version

[Daniel Vogler]

Hi Cory, dear Artem,

Thanks for the mails. Regarding the issue Cory sent.


When doing the following:

I moved libqgtk2.so (not libqgtk3.so in my case) from 
/opt/Qt/5.9.0/gcc_64/plugins/platformthemes


and commented _all_ lines in 
/opt/Qt/5.9/gcc_64/lib/cmake/Qt5Gui/Qt5Gui_QGtk3ThemePlugin.cmake


I then rebuild paraview (build succeeds) but when I try to execute

user:~/software/paraview_bin$ ./bin/paraview
libprotobuf FATAL 
/home/user/software/paraview/ThirdParty/protobuf/vtkprotobuf/src/google/protobuf/stubs/common.cc:62] 
This program requires version 2.6.0 of the Protocol Buffer runtime 
library, but the installed version is 2.3.0.  Please update your 
library.  If you compiled the program yourself, make sure that your 
headers are from the same version of Protocol Buffers as your link-time 
library.  (Version verification failed in 
"/build/mir-O8_xaj/mir-0.26.3+16.04.20170605/obj-x86_64-linux-gnu/src/protobuf/mir_protobuf.pb.cc".)

Aborted


I still have no success. I still have other version of Qt installed 
(also in opt) and did not uninstall "qt5-gtk-platformtheme" as suggested 
by Timo Oster in the thread you sent. Could any of this be the problem? 
I am hesitant to uninstall qt5-gtk-platformtheme as I'm not sure if 
that'll give me another conflict.


Did I forget anything?

Daniel



On 13.02.2018 14:33, Cory Quammen wrote:

Unfortunately, this is a known issue on Ubuntu 16.04.

https://gitlab.kitware.com/paraview/paraview/issues/17751


On Tue, Feb 13, 2018 at 2:29 PM, Artem Bodrin > wrote:


Hello, Daniel.
I have encountered the same trouble as you, Linux Mint (based on
ubuntu 16.04). I did not seek for a solution yet (no need for
linux version right now), but the answer is in the error output.
If you inspect  the 3rd party protobuf bundled with ParaView VTK
submodule, then you can see that original version used by VTK is 2.3.0
So I think, that during compilation it uses the system headers
from ubuntu (which is 2.6.1), but links on internal VTK protobuf
library which is 2.3.0.
My guessing is - remove dev package of protobuf from system and
recompile again, it might help.


> 13 февр. 2018 г., в 22:03, Daniel Vogler mailto:davog...@ethz.ch>> написал(а):
>
> Dear all,
>
> I am having trouble building Paraview 5.2.0 (This version or
older is required for a separate plug-in). Other installations of
paraview (not compiled from source) work fine.
>
> I run Ubuntu 16.04 LTS. I check out the paraview 5.2.0 release
and installed Qt5.6.3 (also tried 5.6 and 5.7 because I had
trouble with Qt during the paraview build earlier) in a separate
directory. I have my (empty) build directory paraview_bin and
paraview 5.2.0 source in /home/user/software/paraview_bin and
/home/user/software/paraview respectively.
>
> - export PATH=/opt/Qt/5.6.3/gcc_64/:$PATH
>
> - ccmake -D PARAVIEW_QT_VERSION:STRING=5 /path/to/paraview
>
> - BUILD_TESTING --> OFF
>
> - generation and make completes
>
> The build works fine, but when I try to execute I get a protobuf
error
>
>
> user:~/software/paraview_bin$ ./bin/paraview
> libprotobuf FATAL

/home/user/software/paraview/ThirdParty/protobuf/vtkprotobuf/src/google/protobuf/stubs/common.cc:62]
> This program requires version 2.6.0 of the Protocol Buffer
runtime library, but the installed version is 2.3.0.
> Please update your library.
> If you compiled the program yourself, make sure that your
headers are from the same version of Protocol Buffers as your
link-time library.
> (Version verification failed in

"/build/mir-O8_xaj/mir-0.26.3+16.04.20170605/obj-x86_64-linux-gnu/src/protobuf/mir_protobuf.pb.cc
".)
> Aborted
>
> although my protoc version seems fine
>
> user:~/software/paraview_bin$ protoc --version
> libprotoc 2.6.1
>
> I have tried uninstalling and reinstalling protoc and
libprotobuf as well as reinstalling Qt afterwards, but can not
figure out this error.
>
> Any suggestions?
>
> Thanks a bunch,
>
> Dan
>

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--
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Staff R&D Engineer
Kitware, Inc.


___

Re: [Paraview] Problem with paraview and Protocol Buffer version

[Cory Quammen]

Unfortunately, this is a known issue on Ubuntu 16.04.

https://gitlab.kitware.com/paraview/paraview/issues/17751


On Tue, Feb 13, 2018 at 2:29 PM, Artem Bodrin  wrote:

> Hello, Daniel.
> I have encountered the same trouble as you, Linux Mint (based on ubuntu
> 16.04). I did not seek for a solution yet (no need for linux version right
> now), but the answer is in the error output. If you inspect  the 3rd party
> protobuf bundled with ParaView VTK submodule, then you can see that
> original version used by VTK is 2.3.0
> So I think, that during compilation it uses the system headers from ubuntu
> (which is 2.6.1), but links on internal VTK protobuf library which is 2.3.0.
> My guessing is - remove dev package of protobuf from system and recompile
> again, it might help.
>
>
> > 13 февр. 2018 г., в 22:03, Daniel Vogler  написал(а):
> >
> > Dear all,
> >
> > I am having trouble building Paraview 5.2.0 (This version or older is
> required for a separate plug-in). Other installations of paraview (not
> compiled from source) work fine.
> >
> > I run Ubuntu 16.04 LTS. I check out the paraview 5.2.0 release and
> installed Qt5.6.3 (also tried 5.6 and 5.7 because I had trouble with Qt
> during the paraview build earlier) in a separate directory. I have my
> (empty) build directory paraview_bin and paraview 5.2.0 source in
> /home/user/software/paraview_bin and /home/user/software/paraview
> respectively.
> >
> > - export PATH=/opt/Qt/5.6.3/gcc_64/:$PATH
> >
> > - ccmake -D PARAVIEW_QT_VERSION:STRING=5 /path/to/paraview
> >
> > - BUILD_TESTING --> OFF
> >
> > - generation and make completes
> >
> > The build works fine, but when I try to execute I get a protobuf error
> >
> >
> > user:~/software/paraview_bin$ ./bin/paraview
> > libprotobuf FATAL /home/user/software/paraview/ThirdParty/protobuf/
> vtkprotobuf/src/google/protobuf/stubs/common.cc:62]
> > This program requires version 2.6.0 of the Protocol Buffer runtime
> library, but the installed version is 2.3.0.
> > Please update your library.
> > If you compiled the program yourself, make sure that your headers are
> from the same version of Protocol Buffers as your link-time library.
> > (Version verification failed in "/build/mir-O8_xaj/mir-0.26.3+
> 16.04.20170605/obj-x86_64-linux-gnu/src/protobuf/mir_protobuf.pb.cc".)
> > Aborted
> >
> > although my protoc version seems fine
> >
> > user:~/software/paraview_bin$ protoc --version
> > libprotoc 2.6.1
> >
> > I have tried uninstalling and reinstalling protoc and libprotobuf as
> well as reinstalling Qt afterwards, but can not figure out this error.
> >
> > Any suggestions?
> >
> > Thanks a bunch,
> >
> > Dan
> >
>
> ___
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at http://www.kitware.com/
> opensource/opensource.html
>
> Please keep messages on-topic and check the ParaView Wiki at:
> http://paraview.org/Wiki/ParaView
>
> Search the list archives at: http://markmail.org/search/?q=ParaView
>
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>



-- 
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Staff R&D Engineer
Kitware, Inc.
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Re: [Paraview] Problem with paraview and Protocol Buffer version

[Artem Bodrin]

Hello, Daniel.
I have encountered the same trouble as you, Linux Mint (based on ubuntu 16.04). 
I did not seek for a solution yet (no need for linux version right now), but 
the answer is in the error output. If you inspect  the 3rd party protobuf 
bundled with ParaView VTK submodule, then you can see that original version 
used by VTK is 2.3.0
So I think, that during compilation it uses the system headers from ubuntu 
(which is 2.6.1), but links on internal VTK protobuf library which is 2.3.0.
My guessing is - remove dev package of protobuf from system and recompile 
again, it might help.


> 13 февр. 2018 г., в 22:03, Daniel Vogler  написал(а):
> 
> Dear all,
> 
> I am having trouble building Paraview 5.2.0 (This version or older is 
> required for a separate plug-in). Other installations of paraview (not 
> compiled from source) work fine.
> 
> I run Ubuntu 16.04 LTS. I check out the paraview 5.2.0 release and installed 
> Qt5.6.3 (also tried 5.6 and 5.7 because I had trouble with Qt during the 
> paraview build earlier) in a separate directory. I have my (empty) build 
> directory paraview_bin and paraview 5.2.0 source in 
> /home/user/software/paraview_bin and /home/user/software/paraview 
> respectively.
> 
> - export PATH=/opt/Qt/5.6.3/gcc_64/:$PATH
> 
> - ccmake -D PARAVIEW_QT_VERSION:STRING=5 /path/to/paraview
> 
> - BUILD_TESTING --> OFF
> 
> - generation and make completes
> 
> The build works fine, but when I try to execute I get a protobuf error
> 
> 
> user:~/software/paraview_bin$ ./bin/paraview
> libprotobuf FATAL 
> /home/user/software/paraview/ThirdParty/protobuf/vtkprotobuf/src/google/protobuf/stubs/common.cc:62]
> This program requires version 2.6.0 of the Protocol Buffer runtime library, 
> but the installed version is 2.3.0.
> Please update your library.
> If you compiled the program yourself, make sure that your headers are from 
> the same version of Protocol Buffers as your link-time library.
> (Version verification failed in 
> "/build/mir-O8_xaj/mir-0.26.3+16.04.20170605/obj-x86_64-linux-gnu/src/protobuf/mir_protobuf.pb.cc".)
> Aborted
> 
> although my protoc version seems fine
> 
> user:~/software/paraview_bin$ protoc --version
> libprotoc 2.6.1
> 
> I have tried uninstalling and reinstalling protoc and libprotobuf as well as 
> reinstalling Qt afterwards, but can not figure out this error.
> 
> Any suggestions?
> 
> Thanks a bunch,
> 
> Dan
> 

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[Paraview] Problem with paraview and Protocol Buffer version

[Daniel Vogler]

Dear all,

I am having trouble building Paraview 5.2.0 (This version or older is 
required for a separate plug-in). Other installations of paraview (not 
compiled from source) work fine.


I run Ubuntu 16.04 LTS. I check out the paraview 5.2.0 release and 
installed Qt5.6.3 (also tried 5.6 and 5.7 because I had trouble with Qt 
during the paraview build earlier) in a separate directory. I have my 
(empty) build directory paraview_bin and paraview 5.2.0 source in 
/home/user/software/paraview_bin and /home/user/software/paraview 
respectively.


- export PATH=/opt/Qt/5.6.3/gcc_64/:$PATH

- ccmake -D PARAVIEW_QT_VERSION:STRING=5 /path/to/paraview

- BUILD_TESTING --> OFF

- generation and make completes

The build works fine, but when I try to execute I get a protobuf error


user:~/software/paraview_bin$ ./bin/paraview
libprotobuf FATAL 
/home/user/software/paraview/ThirdParty/protobuf/vtkprotobuf/src/google/protobuf/stubs/common.cc:62]
This program requires version 2.6.0 of the Protocol Buffer runtime library, but 
the installed version is 2.3.0.
Please update your library.
If you compiled the program yourself, make sure that your headers are from the 
same version of Protocol Buffers as your link-time library.
(Version verification failed in 
"/build/mir-O8_xaj/mir-0.26.3+16.04.20170605/obj-x86_64-linux-gnu/src/protobuf/mir_protobuf.pb.cc".)
Aborted

although my protoc version seems fine

user:~/software/paraview_bin$ protoc --version
libprotoc 2.6.1

I have tried uninstalling and reinstalling protoc and libprotobuf as 
well as reinstalling Qt afterwards, but can not figure out this error.


Any suggestions?

Thanks a bunch,

Dan

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