[pyfrmailinglist] pyFR on hybrid meshes

2014-07-14 Thread Antonio Garcia-Uceda
Dear all, My name is Antonio Garcia-Uceda, and I'm working on implementing a FR algorithm for hybrid meshes, composed of Hexas, Tetras, Prism, and Pyrams. I'm interested particularly on how to choose best solution points, as well as constructing a suitable nodal basis, for every ele

[pyfrmailinglist] Print out FR matrixes

2014-07-14 Thread Antonio Garcia-Uceda
Dear all, My name is Antonio Garcia-Uceda, and I'm working on implementing a FR algorithm for hybrid meshes. Could you tell me where exactly in the pyFR sources I have to include commands to print out the matrixes M1,,M8 in which the FR equations are casted? Many thanks. Best re

[pyfrmailinglist] coordintes transformation for pyramides

2014-07-22 Thread Antonio Garcia-Uceda
Dear all, My name is Antonio Garcia-Uceda, and I'm working on implementing a FR algorithm for hybrid meshes. I'm currently extending my FR method to pyramides, but I'm having troubles to come up with an expression of shape functions to transform from, let's say a r

Re: [pyfrmailinglist] coordintes transformation for pyramides

2014-07-23 Thread Antonio Garcia-Uceda
Tuesday, July 22, 2014 10:00:06 PM UTC+1, Freddie Witherden wrote: > > On 22/07/2014 14:05, Antonio Garcia-Uceda wrote: > > Dear all, > > > > My name is Antonio Garcia-Uceda, and I'm working on implementing a FR > > algorithm for hybrid meshes. > > &g

[pyfrmailinglist] Computation of time step for FR

2014-10-20 Thread Antonio Garcia-Uceda
Dear All, My name is Antonio Garcia-Uceda, and I'm working on Flux Reconstruction. I'd like to know the way you compute the local time step in FR, for steady state solution. Originally I was using an approach inherited from FV (i.e. cellwise computation using cell-averaged solut

Re: [pyfrmailinglist] Computation of time step for FR

2014-10-22 Thread Antonio Garcia-Uceda
cal dt in PyFR at the moment. > > Cheers > > Peter > > On 20 Oct 2014, at 14:19, Freddie Witherden > wrote: > > > On 20/10/14 12:01, Antonio Garcia-Uceda wrote: > >> Dear All, > >> > >> My name is Antonio Garcia-Uceda, and I'm working o

Re: [pyfrmailinglist] Computation of time step for FR

2014-10-23 Thread Antonio Garcia-Uceda
On 23/10/2014 07:39, Antonio Garcia-Uceda wrote: > > Dear All, > > > > Thanks for the reply. Could you please indicate why exactly pyFR does > > not have local dt for steady state solutions? I mean, is there any > > constraint in FR different from the normal l

[pyfrmailinglist] Extrapolate Variables to Flux Points on Faces

2014-10-27 Thread Antonio Garcia-Uceda
Dear All, My name is Antonio Garcia-Uceda, and I'm working on Flux Reconstruction. I have the following question: In pyFR, when we extrapolate the solution from Solution Points in Cells to Flux Points on Faces, Is this carried out over primitive variables (rho, u, v, w, p) or cons

Re: [pyfrmailinglist] Extrapolate Variables to Flux Points on Faces

2014-10-27 Thread Antonio Garcia-Uceda
UTC+1, Freddie Witherden wrote: > > On 27/10/14 09:13, Antonio Garcia-Uceda wrote: > > Dear All, > > > > My name is Antonio Garcia-Uceda, and I'm working on Flux Reconstruction. > > I have the following question: > > > > In pyFR, when we extrapo

[pyfrmailinglist] Issue loading CBLAS library

2014-11-17 Thread Antonio Garcia-Uceda
Dear all, My name is Antonio Garcia-Uceda, and I'm a researcher on Flux Reconstruction methods. I'm using pyFR as part of my project. I'm trying to run pyFR with backend "opemp", but I'm coming across some issues when using a CBLAS library. I get the following err

Re: [pyfrmailinglist] Issue loading CBLAS library

2014-11-18 Thread Antonio Garcia-Uceda
tonio Garcia-Uceda wrote: > > Dear all, > > > > My name is Antonio Garcia-Uceda, and I'm a researcher on Flux > > Reconstruction methods. I'm using pyFR as part of my project. > > > > I'm trying to run pyFR with backend "opemp", but

[pyfrmailinglist] Re: PyFR v0.2.4

2015-03-11 Thread Antonio Garcia-Uceda
Dear prof. Vincent, I'm very interested in your implementation for Pyrams. Would it be possible to have the reference for the solution points you use on these elements, as well as the transformation you use to high-order pyramids. Thanks a lot! Best regards, Antonio On Thursday, January 1,

Re: [pyfrmailinglist] Perform euler case: subsonic flow around a sphere, with pyFR

2015-03-12 Thread Antonio Garcia-Uceda
onautics > Imperial College London > South Kensington > London > SW7 2AZ > UK > > web: www.imperial.ac.uk/aeronautics/research/vincentlab > twitter: @Vincent_Lab > > > > > > On 11 Mar 2015, at 20:24, Freddie Witherden > wrote: > >

Re: [pyfrmailinglist] Perform euler case: subsonic flow around a sphere, with pyFR

2015-03-13 Thread Antonio Garcia-Uceda
ts, especially for sphere > surface. There is option to set order for your mesh in gmsh. In command > line, you can siimply do it. > > gmsh -3 -order 3 your.geo > > Regards, > > Jin Seok > > > > On Thursday, March 12, 2015 at 6:12:30 PM UTC, Antonio Garcia-Uceda w

[pyfrmailinglist] How to set Slip-BCs on PyFR

2015-04-23 Thread Antonio Garcia-Uceda
Dear all, My name is Antonio Garcia-Uceda, and I'm a researcher on Flux Reconstruction methods. I'm using pyFR as part of my project. My question is pretty simple. How can I set Slip BCs on PyFR (or Symmetry BCs)? I can'f find it in your documentation. Thanks in advance

Re: [pyfrmailinglist] How to set Slip-BCs on PyFR

2015-04-24 Thread Antonio Garcia-Uceda
rg/user_guide.php>/ <http://www.pyfr.org/user_guide.php> > user_guide.php <http://www.pyfr.org/user_guide.php> under *soln-bcs-name*. > > Regards​ > On Apr 23, 2015 1:06 PM, "Antonio Garcia-Uceda" > wrote: > >> Dear all, >> >> My name is Antonio G

Re: [pyfrmailinglist] How to set Slip-BCs on PyFR

2015-04-24 Thread Antonio Garcia-Uceda
know if this ​ > > > On Fri, Apr 24, 2015 at 9:02 AM, Antonio Garcia-Uceda < > antonio.ga...@numeca.be > wrote: > >> Dear Arvind, >> >> Thanks a lot for yor reply. Indeed I'm using pyFR-0.2.4 and I failed >> trying to set 'slp-adia

Re: [pyfrmailinglist] How to set Slip-BCs on PyFR

2015-04-24 Thread Antonio Garcia-Uceda
Sorry when I said set-up I meant the .ini file, :) On Friday, April 24, 2015 at 10:22:23 AM UTC+2, Antonio Garcia-Uceda wrote: > > Dear Arvind, > > Indeed this is what I need, thanks. Do you know if these are also > available in PyFR -0.2.4? Unfortunately I'm having tro

Re: [pyfrmailinglist] How to set Slip-BCs on PyFR

2015-04-24 Thread Antonio Garcia-Uceda
yer > wrote: > > Well, I do not have any ready to use ini. > > I would recommend trying it and posting the ini file on the mailing list > if you are not able to run it successfully (or even otherwise!) > > Regards > Arvind > > On Fri, Apr 24, 2015 at

[pyfrmailinglist] Print out variables within the mako templates subroutines

2015-05-06 Thread Antonio Garcia-Uceda
Dear all, My name is Antonio Garcia-Uceda, and I'm a researcher on Flux Reconstruction methods. I'm using pyFR as part of my project. I'd like to know whether it is possible to print out variables within the mako templates subroutines in pyFR. For instance, to print out the

[pyfrmailinglist] Re: Print out variables within the mako templates subroutines

2015-05-06 Thread Antonio Garcia-Uceda
ot;. However the flowchart inside these subroutines is a bit confusing and I'd need some indications, if possible. Thanks a lot once more. Best regards, Antonio On Wednesday, May 6, 2015 at 9:01:09 AM UTC+2, Antonio Garcia-Uceda wrote: > > Dear all, > > My name is Antonio Garcia-Uced

Re: [pyfrmailinglist] Print out variables within the mako templates subroutines

2015-05-06 Thread Antonio Garcia-Uceda
eddie Witherden wrote: > > -BEGIN PGP SIGNED MESSAGE- > Hash: SHA256 > > Hi Antonio, > > On 06/05/2015 08:01, Antonio Garcia-Uceda wrote: > > Also, is it possible to visualize the temporary .c or .cu files > > generated by these templates when running pyFR w

Re: [pyfrmailinglist] Print out variables within the mako templates subroutines

2015-05-06 Thread Antonio Garcia-Uceda
; > On 06/05/2015 09:50, Antonio Garcia-Uceda wrote: > > I managed to output the data inside the mako kernels as you > > indicated in the other posts. Is it also possible to print out as > > well the given sol/flux point in which the operation is going on? > > There

[pyfrmailinglist] case files of Viscous Flow around Cylinder

2015-05-21 Thread Antonio Garcia-Uceda
Dear all, My name is Antonio Garcia-Uceda, and I'm a researcher on Flux Reconstruction methods. I'm using pyFR as part of my project. I'd like to run the test case you reported in your paper: *"PyFR: An open source framework for solving advection-diffusion type p

Re: [pyfrmailinglist] case files of Viscous Flow around Cylinder

2015-05-21 Thread Antonio Garcia-Uceda
SIGNED MESSAGE- > Hash: SHA256 > > Hi Antonio, > > On 21/05/2015 09:17, Antonio Garcia-Uceda wrote: > > My name is Antonio Garcia-Uceda, and I'm a researcher on Flux > > Reconstruction methods. I'm using pyFR as part of my project. > > > > I

Re: [pyfrmailinglist] case files of Viscous Flow around Cylinder

2015-05-26 Thread Antonio Garcia-Uceda
10:50:17 AM UTC+2, Freddie Witherden wrote: >> >> -BEGIN PGP SIGNED MESSAGE- >> Hash: SHA256 >> >> Hi Antonio, >> >> On 21/05/2015 09:17, Antonio Garcia-Uceda wrote: >> > My name is Antonio Garcia-Uceda, and I'm a researcher on Fl

[pyfrmailinglist] A question about the pyFR data structure: import mesh files

2015-06-24 Thread Antonio Garcia-Uceda
Dear all, My name is Antonio Garcia-Uceda, and I'm a researcher on Flux Reconstruction methods. I'm using pyFR as part of my project. I'm digging a bit into the pyFR data structure. Concerning the import of mesh files, I've noticed that pyFR creates, for each boundary patc

Re: [pyfrmailinglist] A question about the pyFR data structure: import mesh files

2015-06-24 Thread Antonio Garcia-Uceda
er. This gives > that index. You will notice that this index never goes beyond the number > of faces minus 1. > > Hope this is clear. > Arvind > > > On Wed, Jun 24, 2015 at 11:11 AM, Antonio Garcia-Uceda < > antonio.garcia-uc...@numeca.be> wrote: > >> Dea

Re: [pyfrmailinglist] A question about the pyFR data structure: import mesh files

2015-06-24 Thread Antonio Garcia-Uceda
: > > -BEGIN PGP SIGNED MESSAGE- > Hash: SHA256 > > Hi Antonio, > > On 24/06/2015 11:11, Antonio Garcia-Uceda wrote: > > I'm digging a bit into the pyFR data structure. Concerning the > > import of mesh files, I've noticed that pyFR creates, for ea

Re: [pyfrmailinglist] A question about the pyFR data structure: import mesh files

2015-06-24 Thread Antonio Garcia-Uceda
True. Thanks a lot for your reply. Best regards, Antonio On Wednesday, June 24, 2015 at 2:13:45 PM UTC+2, Freddie Witherden wrote: > > Hi Antonio, > > On 24/06/15 13:07, Antonio Garcia-Uceda wrote: > > I also noticed that pyFR does not support Serendipity type elements. >

[pyfrmailinglist] BLAS libraries used in PyFR

2015-10-19 Thread Antonio Garcia-Uceda
Dear All, My name is Antonio Garcia-Uceda, and I'm working on Flux Reconstruction. Could you please let me know which BLAS-type library do you use with PyFR? And according to your experience, Which one offers the best performance? In my experience, OpenBLAS library is more efficient

[pyfrmailinglist] Re: BLAS libraries used in PyFR

2015-10-20 Thread Antonio Garcia-Uceda
Thanks a lot Freddie, I should keep trying with ATLAS then. Did you download yours from the same source? Best regards, Antonio On Monday, October 19, 2015 at 12:32:54 PM UTC+2, Antonio Garcia-Uceda wrote: > > Dear All, > > My name is Antonio Garcia-Uceda, and I'

Re: [pyfrmailinglist] Re: BLAS libraries used in PyFR

2015-11-03 Thread Antonio Garcia-Uceda
anks in advance. Best regards, Antonio On Saturday, October 24, 2015 at 6:55:15 PM UTC+2, Freddie Witherden wrote: > > Hi Antonio, > > On 20/10/15 10:47, Antonio Garcia-Uceda wrote: > > I should keep trying with ATLAS then. Did you download yours from the > > same sou

Re: [pyfrmailinglist] Re: BLAS libraries used in PyFR

2015-11-04 Thread Antonio Garcia-Uceda
with respect to the peak FLOPS will be similar, am I right? Best regards, Antonio On Tuesday, November 3, 2015 at 9:17:13 PM UTC+1, Freddie Witherden wrote: > > Hi Antonio, > > On 03/11/15 13:52, Antonio Garcia-Uceda wrote: > > I managed to build and link the ATLAS library.

[pyfrmailinglist] Question about the compiler used in Mako template library

2015-11-13 Thread Antonio Garcia-Uceda
Dear all, My name is Antonio Garcia-Uceda, and I'm working on research on Flux Reconstruction methods. I'd like to ask you concerning the Mako template library used in PyFR to write and compile on the fly the solver kernerls. I'd like to know which compiler it uses to compile

Re: [pyfrmailinglist] Question about the compiler used in Mako template library

2015-11-13 Thread Antonio Garcia-Uceda
lt;https://twitter.com/Vincent_Lab> > > > > > > On 13 Nov 2015, at 10:15, Antonio Garcia-Uceda < > antonio.garcia-uc...@numeca.be> wrote: > > Dear all, > > My name is Antonio Garcia-Uceda, and I'm working on research on Flux > Reconstruction methods. &g

Re: [pyfrmailinglist] Question about the compiler used in Mako template library

2015-11-13 Thread Antonio Garcia-Uceda
Thanks a lot for your reply Antonio On Friday, November 13, 2015 at 11:48:29 AM UTC+1, Freddie Witherden wrote: > > -BEGIN PGP SIGNED MESSAGE- > Hash: SHA256 > > Hi Antonio, > > On 13/11/2015 10:33, Antonio Garcia-Uceda wrote: > > Thanks. I guess if not sp

[pyfrmailinglist] Output solution on the bounraries with PyFR

2015-11-23 Thread Antonio Garcia-Uceda
Dear all, I'd like to ask you whether PyFR is able to output the solution on specific boundaries, such as pressure on a solid boundary. I know with the "[soln-plugin-sampler]" one can output the solution at specific locations, but it'd be tedious to define the boudnary point by point. If the

Re: [pyfrmailinglist] Output solution on the bounraries with PyFR

2015-11-23 Thread Antonio Garcia-Uceda
gards, Antonio On Monday, November 23, 2015 at 2:12:21 PM UTC+1, Freddie Witherden wrote: > > -BEGIN PGP SIGNED MESSAGE- > Hash: SHA256 > > Hi Antonio, > > On 23/11/2015 12:53, Antonio Garcia-Uceda wrote: > > I'd like to ask you whether PyFR is able to

[pyfrmailinglist] Issues to compile PyFR-1.4.0

2016-06-22 Thread Antonio Garcia-Uceda
Dear all, I'd be very grateful if you could help me out with the following: I'm trying to compile the last version PyFR-1.4.0, by launching the "setup.py" script. However at some point it crashes with the output shown below. In my understanding, the problem comes when trying to install the pr

Re: [pyfrmailinglist] Issues to compile PyFR-1.4.0

2016-06-22 Thread Antonio Garcia-Uceda
June 22, 2016 at 3:58:49 PM UTC+2, Freddie Witherden wrote: > > Hi Antonio, > > On 22/06/2016 06:53, Antonio Garcia-Uceda wrote: > > I'd be very grateful if you could help me out with the following: > > > > I'm trying to compile the last version PyFR-1

Re: [pyfrmailinglist] Issues to compile PyFR-1.4.0

2016-06-22 Thread Antonio Garcia-Uceda
running the setup.py script. How can I then complete the installation? Thanks once more. Best regards, Antonio On Wednesday, June 22, 2016 at 4:13:28 PM UTC+2, Freddie Witherden wrote: > > Hi Antonio, > > On 22/06/2016 07:11, Antonio Garcia-Uceda wrote: > > Thanks a

[pyfrmailinglist] Options Anti-Aliasing in PyFR

2016-08-30 Thread Antonio Garcia-Uceda
Dear all, My name is Antonio Garcia-Uceda, and I'm a researcher working on Flux Reconstruction Methods. I have a question about the "Anti-Aliasing" technique available in PyFR in order to improve the stability of the method. I see there are several options available, so a

Re: [pyfrmailinglist] Options Anti-Aliasing in PyFR

2016-08-30 Thread Antonio Garcia-Uceda
MSci ARCS DIC PhD > Senior Lecturer and EPSRC Early Career Fellow > Department of Aeronautics > Imperial College London > South Kensington > London > SW7 2AZ > UK > > web: www.imperial.ac.uk/aeronautics/research/vincentlab > twitter: @Vincent_Lab <https://twitter.com

[pyfrmailinglist] Issues to run last version PyFR v.1.5.0

2016-10-05 Thread Antonio Garcia-Uceda
Dear all, I've tried to run the last release of PyFR v.1.5.0. However I get the error message below, I presume related to the compilation of files created by PyFR with the solver kernels therein. Previous version v.1.4.0 runs correctly. Please let me know if you know the source of these issue

Re: [pyfrmailinglist] Issues to run last version PyFR v.1.5.0

2016-10-05 Thread Antonio Garcia-Uceda
uch as > intel C compiler. In this case, you need to specify C compiler as below. > > [backend-openmp] > cc = icc (or your C compiler) > > Regards, > > Jin Seok > > On Wed, 2016-10-05 at 02:08 -0700, Antonio Garcia-Uceda wrote: > > Dear all, > > &g

[pyfrmailinglist] configuration files of your simulation of the test case in the paper: Towards Green Aviation with Python at Petascale

2016-12-01 Thread Antonio Garcia-Uceda
Dear all, Would it be possible to have the configuration ".ini" files of your simulations of the test case "flow over a T106D LPT linear cascade" of your recently published paper: Towards Green Aviation with Python at Petascale? Thanks in advance. Best regards, Antonio -- You received this

[pyfrmailinglist] plugin for PyFR to compute global quantities for the test case Taylor-Green Vortex

2016-12-08 Thread Antonio Garcia-Uceda
Dear all, First of all, I'd like to ask you whether you have run the test case Taylor-Green vortex with PyFR. If so, I presume you have implemented a the plug-in for PyFR to compute the global quantities needed to validate this test case: integrals of kinetic energy, dissipation rate of energy

Re: [pyfrmailinglist] plugin for PyFR to compute global quantities for the test case Taylor-Green Vortex

2016-12-12 Thread Antonio Garcia-Uceda
case I will develop a simple plug-in for this following the examples provided in the sources. Thanks a lot Freddie, Best regards, Antonio On Thursday, December 8, 2016 at 6:21:09 PM UTC+1, Freddie Witherden wrote: > > Hi Antonio, > > On 08/12/2016 00:50, Antonio Garcia-Uceda wrote

[pyfrmailinglist] Time step and nb iterations for the simulations in the paper "Towards Green Aviation with Python at Petascale"

2017-01-26 Thread Antonio Garcia-Uceda
Dear all, I'd like to know whether it'd be possible to obtain the following info about the physics simulations in the paper "Towards Green Aviation with Python at Petascale" worth of the Gordom Bell Prize: - approx. physical time step - total nb iterations - nb chord lenghts simulated.

Re: [pyfrmailinglist] Time step and nb iterations for the simulations in the paper "Towards Green Aviation with Python at Petascale"

2017-01-27 Thread Antonio Garcia-Uceda
regards, Antonio On Thursday, January 26, 2017 at 8:16:22 PM UTC+1, Freddie Witherden wrote: > > Hi Antonio, > > On 26/01/17 08:30, Antonio Garcia-Uceda wrote: > > Dear all, > > > > I'd like to know whether it'd be possible to obtain the following info &

Re: [pyfrmailinglist] Time step and nb iterations for the simulations in the paper "Towards Green Aviation with Python at Petascale"

2017-02-06 Thread Antonio Garcia-Uceda
; * used RK45 time stepping (can be used to calculate the total number of > iterations) > > On Fri, Jan 27, 2017 at 2:22 PM, Antonio Garcia-Uceda < > antonio.ga...@numeca.be > wrote: > >> Hi Freddie, >> >> Thanks for your reply. >> >> However I

[pyfrmailinglist] Knowing number of floating point operations for pointwise kernels n PyFR

2017-02-06 Thread Antonio Garcia-Uceda
Dear all, I'm Antonio Garcia-Uceda, researcher on Flux Reconstruction methods. I'd like to ask you whether you could provide me with a estimation of the number of floating point operations needed for the different pointwise operators in PyFR (separately if possible). In parti

Re: [pyfrmailinglist] Knowing number of floating point operations for pointwise kernels n PyFR

2017-02-10 Thread Antonio Garcia-Uceda
, such as "/" or "sqrt"? Best regards, Antonio On Tuesday, February 7, 2017 at 8:16:16 PM UTC+1, Freddie Witherden wrote: > > Hi Antonio, > > On 06/02/17 07:42, Antonio Garcia-Uceda wrote: > > I'd like to ask you whether you could provide me with a esti

[pyfrmailinglist] Use of Artificial Viscosity with PyFR

2017-03-01 Thread Antonio Garcia-Uceda
Dear all, I'm trying to run the test case: Inviscid transonic flow around NACA0012, from the previous 3rd High-Order Workshop (you can find a description below): https://www.grc.nasa.gov/hiocfd/wp-content/uploads/sites/22/case_c1.2.pdf I've run the case on a coarse mesh of 2240 cells, order p3

Re: [pyfrmailinglist] Use of Artificial Viscosity with PyFR

2017-03-01 Thread Antonio Garcia-Uceda
> South Kensington > London > SW7 2AZ > UK > > web: www.imperial.ac.uk/aeronautics/research/vincentlab > twitter: @Vincent_Lab > > > > > > On 1 Mar 2017, at 09:29, Antonio Garcia-Uceda > wrote: > > Dear all, > > I'm trying to run the tes

Re: [pyfrmailinglist] Use of Artificial Viscosity with PyFR

2017-03-07 Thread Antonio Garcia-Uceda
. Best regards, Antonio On Wednesday, March 1, 2017 at 2:10:14 PM UTC+1, Antonio Garcia-Uceda wrote: > > Dear Peter, > > I'm solving the Euler equations (or Navier-Stokes with mu=0.0 since the > artificial viscosity model only works for the Navier-Stokes solver, as far > as