93-4020
> -Original Message-
> From: pymol-users-ad...@lists.sourceforge.net
> [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of
> maire.a.conv...@gsk.com
> Sent: Thursday, May 27, 2004 9:06 AM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL]
Hi,
I'm trying to create a movie showing mainchain and sidechain movements
between two different states of a protein.
I've generated the intermediate files, but they contain only the ca
positions and not the other mainchain atom positions of the residues which
are moving.
I've specified the ss, but
Alex
try typing:
dss
this will assign secondary structure to your PDB and then the cartoon
will show you the sheets and helices you desire.
Scott
On Feb 19, 2004, at 1:44 PM, ALEX DAJKOVIC wrote:
dear all,
i am new to pymol and i have a question about cartoons.
i saw the demo of cartoon r
dear all,
i am new to pymol and i have a question about cartoons.
i saw the demo of cartoon ribbons and really liked it, but i haven't
been able to get my protein displayed that way. when i give the command
"cartoon automatic" all i get is a simple line that apparently traces
the backbone of my
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> -Original Message-
> From: David A. Horita [mailto:dhor...@wfubmc.edu]
> Sent: Wednesday, August 06, 2003 5:27 AM
> To: Warren L. DeLano
> Subject: RE: [PyMOL] cartoons through nonstandard residues
>
> Warren,
> Thanks for the re
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-Original Message-
From: pymol-users-ad...@lists.sourceforge.net
[mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of David A.
Horita
Sent: Tuesday, August 05, 2003 1:53 PM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL
rge.net
Subject: [PyMOL] cartoons through nonstandard residues
Hi,
When I try to draw a cartoon through the backbone of a nonstandard
residue (in this case, phosphotyrosine), the cartoon strand stops prior
to the PTR and starts after. How do I get a continuous strand through
the phosphotyrosine bac
Hi,
When I try to draw a cartoon through the backbone of a nonstandard residue (in
this case, phosphotyrosine), the cartoon strand stops prior to the PTR and
starts after. How do I get a continuous strand through the phosphotyrosine
backbone (or other residues, in the general case)? Ribbons se
Hi All,
Is there a way to force Pymol to draw cartoons through modified amino acids?
Here's the story: I have a phospho-thr, with residue name TPO. The line
representation shows main chain connectivity for this residue, but when I
display the cartoon representation, there is a break in the tube
