Have a look at JGR.
stefano
On 29/apr/05, at 15:21, D0c wrote:
Hey guys,
I got a java gui app which loads up data into a table. How can i use R
to perform statistical functions on the data in the table?
P.S My question is not particularly geared towards Java coding, but
more towards allowing R
This has been fixed and a bug in 2.0.1.
2.1.0 binary will be fine.
stefano
p.s. You are actually referring to R.app no RAqua (the old carbon code)
On 25/apr/05, at 16:23, Paul Roebuck wrote:
Anyone else experiencing crashes when attempting to flush
the console with the R GUI on OS X? I get a
On 19/apr/05, at 16:40, Joe Conway wrote:
Sean Davis wrote:
On Apr 19, 2005, at 8:56 AM, Prof Brian Ripley wrote:
Please do consult the posting guide as to the right place. (I've
moved this to R-devel and included Joe Conway. Joe: perhaps you
could make you email address more readily available
On 15/apr/05, at 06:51, Charles Geyer wrote:
The MacOS X check summary at CRAN Contributed Packages
has been missing packages 227-438 for a while. Some problem
with table formatting? Or what?
gosh, it should be some script problem as all the packages are checked.
I'll fix this. thanks for
On 05/apr/05, at 22:51, Paul English wrote:
Hi,
I'm wondering if it is possible to install a package for R 2.0 on R
1.9.1 on Mac OS X?
no, not even on other platforms, R-2.0.x requires packages built for
these releases
I'm getting this error which seems to be known issue:
library(quantreg)
On 23/mar/05, at 09:04, Martin Maechler wrote:
Bill == Bill Northcott [EMAIL PROTECTED]
on Wed, 23 Mar 2005 10:19:22 +1100 writes:
Bill On 23/03/2005, at 12:55 AM, Simon Urbanek wrote:
As I see it, the MacOS X behaviour is not IEEE-754 compliant.
I had a quick look at the IEEE web site and
No, blas/veclib is tested, so aprt this extreme case you should report
some other more commonly used cases in which something fails on OS X.
This will help us to work it out.
As said, I'll try some tests without using veclib and let you know.
I've fowarded this mail to r-devel, which seems to
no, on Mac OS X, but could be easily implemented.
stefano
On 07/mar/05, at 21:02, Duncan Murdoch wrote:
Under GUIs other than Windows (Mac OS X, ESS, etc.) does
cat(\a)
still make a bell (or some other) sound? If so, I'll add a bell()
function to utils.
Duncan Murdoch
Hi Jake,
with this config
hal:~ jago$ gcc -v
Reading specs from /usr/libexec/gcc/darwin/ppc/3.3/specs
Thread model: posix
gcc version 3.3 20030304 (Apple Computer, Inc. build 1671)
hal:~ jago$ g77 -v
Reading specs from
/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2/specs
Configured with:
On Dec 6, 2004, at 12:42 PM, Kurt Hornik wrote:
smyth writes:
The link to MacOS X check summary on the page
http://cran.r-project.org/src/contrib/PACKAGES.html
is broken.
Gordon,
Thanks but ... this is really not a bug in R, but a problem with CRAN.
Stefano: the link points to
Hi Adam,
you should remove the old RAqua code which is apparently still on your system
given the error message.
On Panther (10.3+) you should install the corresponding .pkg you find in the
R-2.0.1 disk image. The readme says that you have to remove manually the old
RAqua.
stefano
Full_Name:
On Nov 8, 2004, at 7:41 PM, [EMAIL PROTECTED] wrote:
Builds of the R-2.0.0 release have been considerably more successful
at my site than previous releases. I now have it installed on these
platforms:
Apple PowerPC G3 267MHz GNU/Linux 2.4.19-4a (Yellow Dog Linux release
2.3 (Dayton))
Compaq
yes that was intentional and present in 1.9.0 as well and also
explained in the FAQ (see section: Where are the packages I've
installed?)
The idea behind was: instead of using ~/.R to put anything
R-specific, se use ~/Library (~/Application Support would have also
been acceptable).
But we
yes that was intentional and present in 1.9.0 as well and also
explained in the FAQ (see section: Where are the packages I've
installed?)
The idea behind was: instead of using ~/.R to put anything
R-specific, se use ~/Library (~/Application Support would have also
been acceptable).
But we
I would add that some action has to be taken in presence of missing
values, i.e.
x - c(1,2,2,4,7, NA, 10,12, 15,20)
ecdf(x)
Error in xy.coords(x, y) : x and y lengths differ
stefano
On Oct 17, 2004, at 8:50 AM, [EMAIL PROTECTED] wrote:
Full_Name: Martin Frith
Version: R-2.0.0
OS: linux-gnu
Please check the directory you are working on.
stefano iacus
On Sep 28, 2004, at 11:42 AM, [EMAIL PROTECTED] wrote:
Full_Name: Yfke Ongena
Version: Aqua GUI for R 1.9.1
OS: MAC OS 10.3.5
Submission from: (NULL) (130.37.168.69)
R was succesfully installed and worked fine, however, after I closed
On Aug 14, 2004, at 1:43 AM, [EMAIL PROTECTED] wrote:
okay, so checking the override box at the bottom of the menu allows
the changes to take effect.
I still don't understand why you need to have the override box there
in the first place
if, in the R Console, you specify arguments in quartz()
Please remove your copy of libxml2 in /usr/local/lib, you no longer
need it on Panther and the one included in 10.3.4 is incompatible with
the one in /usr/local/lib
stefano
On Jul 7, 2004, at 12:41 PM, [EMAIL PROTECTED] wrote:
Full_Name: Theodosios Theodosiou
Version: 1.9.1
OS: MAC OS X
Please remove your copy of libxml2 in /usr/local/lib, you no longer
need it on Panther and the one included in 10.3.4 is incompatible with
the one in /usr/local/lib
stefano
On Jul 7, 2004, at 12:41 PM, [EMAIL PROTECTED] wrote:
Full_Name: Theodosios Theodosiou
Version: 1.9.1
OS: MAC OS X
If I remember well, Jan is using g77 3.5(!) from KHanna page? I'm I
right Jan?
We have to solve this g77 issues on Mac OS X soon as many packages
doesn't pass make check when they contain fortran code.
I hope I can make some advance with xlf to see if I can manage to fix
most of these.
stefano
On Jun 27, 2004, at 5:51 PM, Simon Urbanek wrote:
On Jun 26, 2004, at 9:41 AM, stefano iacus wrote:
Thanks for raising this problem. I agree, the installer should not
change the permissions on /Applications (but user can decide to
install the application somewhere else and move
now added back on the page mentioned on the MAC OS X FAq.
stefano
On Jun 15, 2004, at 12:50 PM, [EMAIL PROTECTED] wrote:
Full_Name: David Firth
Version: 1.9.0
OS: Mac OS 10.3
Submission from: (NULL) (137.205.240.25)
For libreadline, the R for Mac OS X FAQ points to
http://www.economia.unimi.it/R
Thanks for raising this problem. I agree, the installer should not
change the permissions on /Applications (but user can decide to install
the application somewhere else and move it to /Applications later as a
temporary solution)
It only affects the directory where you choose to install R.app
On Jun 26, 2004, at 9:41 AM, stefano iacus wrote:
Thanks for raising this problem. I agree, the installer should not
change the permissions on /Applications (but user can decide to
install the application somewhere else and move it to /Applications
later as a temporary solution)
It only
Please report a reproducible example.
It's surely something related to the history (prev/next key) management
but I cannot track it down this way.
stefano
On Jun 5, 2004, at 4:36 AM, [EMAIL PROTECTED]
wrote:
Full_Name: Murray Pung
Version: 1.9.0
OS: OSX Mac
Submission from: (NULL)
I can confirm the behaviour (btw, 1.9.0 is not beta) in 1.9.0 and in
R-patched
I'll try to investigate.
stefano
On May 21, 2004, at 3:24 PM, [EMAIL PROTECTED] wrote:
Full_Name: David L. Van Brunt
Version: 1.8-1.9 beta
OS: OS X 10.3
Submission from: (NULL) (68.74.58.109)
As posted on R-Help
Finally, we are showing you a bit of work on the Cocoa GUI.
Do not expect too much, it is just a preview. You have some nice
feature yet like code and file completion, but still don't expect too
much.
Have a look here
http://www.economia.unimi.it/R
It works with R.app 1.9.0
This is a joint
Why this is related in any sense to a bug (report)?
BTW, $(prefix) can contain Libraries in its path, why using
$(prefix)/Libraries/ ??
Why should R.app and the R.framework be placed on the same target?
What can be done is to set a R_APPLICATION_DIR variable default-ed to
/Applications, I
Please, at least tell us which configure options you used and tools'
versions.
stefano
On May 3, 2004, at 2:52 PM, Prof Brian Ripley wrote:
I don't think this is a bug in *R*, especially as you appear to be
using
the unreleased gcc 3.4!
Hint: there needs to be a dynamic library for libg2c,
I discovered today a curious behavior of the Finder.
If you double click on the R icon directly, on Panther, you'll see
R.bin in the application menu. If you call R via an applescript like
the following, you'll see only R as it should be.
try
tell application R
activate
it is a problem with preferences sync. This should no longer happen in
1.9.0.
stefano
On Apr 8, 2004, at 9:44 PM, [EMAIL PROTECTED] wrote:
On Thu, 8 Apr 2004 [EMAIL PROTECTED] wrote:
Full_Name: John C. Paolillo
Version: 1.8.1 Aqua
OS: Mac OS X 10.3
Submission from: (NULL) (12.223.226.232)
Symbols fonts has changed encoding from 10.2 to 10.3 and this brokes
things when using RAqua on different systems.
The new R 1.9.0 fixes this.
Still not able to get styled text (bold, italcs) at the moment.
stefano
On Mar 28, 2004, at 9:55 AM, [EMAIL PROTECTED] wrote:
Full_Name: Mark St. John
you mean StartR I guess.
If should be different for the framework version.
You can have a preview on http://www.economia.unimi.it/R
Please let me know.
stefano
On Mar 26, 2004, at 5:01 PM, [EMAIL PROTECTED] wrote:
Full_Name: Adam nave
Version: 1.8.1
OS: OS X - 10.2.x and 10.3.x
Submission from:
Well,
1.9.0 planned for april 4th has been delayed a bit but the framework
version you find on the url I gave is almost the definitive.
You can probably just wait a couple of weeks and install the release
version and, in any case, I strongly suggest to upgrade to R 1.9.0 and
remove StartR/Raqua
Yes this file has been moved by error.
In nay case it will be replaced by the one called RMACOSX-FAQ.html
thanks for signaling
stefano
On Mar 22, 2004, at 1:14 PM, [EMAIL PROTECTED] wrote:
Hello!
http://cran.r-project.org/bin/macosx/RAqua-FAQ.html delivers an error
404. Is there any webmaster
the right url and case is the following
http://cran.r-project.org/bin/macosx/RMacOSX-FAQ.html
stefano
On Mar 22, 2004, at 1:14 PM, [EMAIL PROTECTED] wrote:
Hello!
http://cran.r-project.org/bin/macosx/RAqua-FAQ.html delivers an error
404. Is there any webmaster who could fix it?
Thanks!
Best
A first preview of R-1.9.0-alpha is available at
http://www.economia.unimi.it/R and it is a framework build.
This version includes all the supported .dylibs needed to run R itself
apart for the tcl/tk libs that can be installed according to what the
same page says. But you don't need to
You should better provide the Console.log instea.d
Try to install the libreadline package that comes with RAqua.dmg and
see if it works.
stefano
On Mar 2, 2004, at 11:29 PM, Robert King wrote:
Hello,
I don't know very much about Macs, so may have missed some obvious
steps,
but I downloaded
On Feb 21, 2004, at 2:16 PM, Simon Urbanek wrote:
On Feb 19, 2004, at 2:55 AM, stefano iacus wrote:
I've just committed a new version of the quartz device to R-devel.
This seems to fix the problem with displaying math symbols in plots
under Panther.
I gave it a shot on a Jag machine (darwin 6.8
I've just committed a new version of the quartz device to R-devel.
This seems to fix the problem with displaying math symbols in plots
under Panther.
I can't not more test R under Jaguar (at least not these days). In case
you have the opportunity to do that, please send me a report if it
You should read the readme file. This is not a bug.
BTW, you have to install the libreadline package that you find in the
RAqua.dmg disk image.
stefano iacus
On Feb 17, 2004, at 6:10 AM, [EMAIL PROTECTED] wrote:
Full_Name: David Steinsaltz
Version: 1.8.1
OS: Mac 10.3.2
Submission from: (NULL
Thanks for spotting this, I know how to fix it.
stefano
On Venerdì, gen 16, 2004, at 19:41 Europe/Rome, [EMAIL PROTECTED] wrote:
Full_Name: Steven T. Stoddard
Version: 1.8.1
OS: OS X 10.3.2
Submission from: (NULL) (68.77.32.31)
Using fix(data.frame) causes an immediate bus error and crashes R.
, 2003, at 12:41 Europe/Rome, Brian Beckage wrote:
I did read the readme.txt but it said you 'should' install the
libreadline
so my impression was that it was recommended but not necessary.
Undoubtedly, an oversight on my part.
Brian
On Fri, 12 Dec 2003, stefano iacus wrote:
You should read
You should read the readme.txt file which says that you have to install
the libreadline with the provided .pkg archive that comes with
RAqua.dmg.
stefano
On Giovedì, dic 11, 2003, at 16:39 Europe/Rome, [EMAIL PROTECTED]
wrote:
I've installed R 1.8.1 on OSX 10.3 (Panther) using the RAqua.pkg
On Venerdì, dic 5, 2003, at 00:48 Europe/Rome,
[EMAIL PROTECTED] wrote:
I have just used the RAqua.pkg to install R, and it doesn't work! I
have Mac OS X 10.3, and the old version of R works OK, but the .pkg
thing installed, and then when I double-click on the StartR
application nothing
Some user reported me that help.start() is no longer working on Panther
under RAqua.
I don't have this problem on my machine but a couple of users repoterd
me this.
Can you please make this small test an eventually tell me which is your
system default browser?
stefano
I've built a version of RAqua that uses X11 TclTk and NOT AquaTclTk.
http://www.economia.unimi.it/R/RAquaX11.dmg (15 MB disk image)
The idea is that you: launch RAqua, launch X application (the X
Server), and from inside R type
x11() # just tt set DISPLAY to :0.0. Eventually close this
, Stefano Iacus wrote:
I've built a version of RAqua that uses X11 TclTk and NOT AquaTclTk.
http://www.economia.unimi.it/R/RAquaX11.dmg (15 MB disk image)
The idea is that you: launch RAqua, launch X application (the X
Server), and from inside R type
x11() # just tt set DISPLAY to :0.0
From the RAqua faq just uploaded to CRAN (so it will take until
tomorrow to appear)
Panther notes
After installing Panther (MacOSX 10.3) it turns out that package
installation (either from sources or from binaries) can fail. If you
get an error like this (this comes from source package
Thanks Thomas,
I'll change the text in the RAqua faq.
stefano
On Giovedì, nov 6, 2003, at 20:22 Europe/Rome, Thomas Lumley wrote:
On Thu, 6 Nov 2003, Stefano Iacus wrote:
Thanks to Thomas L. and other users to stop this and suggest fixes.
Thomas is still claiming that it is also configure
On Giovedì, ott 30, 2003, at 17:54 Europe/Rome, Peter Dalgaard wrote:
Stefano Iacus [EMAIL PROTECTED] writes:
While playing around with panther I discovered (with surprise) that
tcltk seems to work (even if not smoothly) with RAqua without first
calling tkStartGUI.
I switched back to 10.2.6
While playing around with panther I discovered (with surprise) that
tcltk seems to work (even if not smoothly) with RAqua without first
calling tkStartGUI.
I switched back to 10.2.6 and it works as well.
I think this is due to the last minute fix in RAqua now using idle
timers because of too
Duncan is working on this at lower level in the xml package code.
As you see on cran with XML version 95-3 which is still not optimal.
All will be fixed in few days when Duncan has finished travelling
around :))
Btw, it preferable to use libxml2 which builds and configs fine without
Has anyone successfully check/build tseries for MacOSX?
It seems like there is the same problem with symbols duplications. The
-m like option does not seem to help.
stefano
__
[EMAIL PROTECTED] mailing list
I've partly solved the problem with CPU usage in RAqua.
I choose a comprise among cpu time usage and console scroll speednees.
I've just commited the changes between a blackout and another ...
I finally installed an IdleTimer instead of a Timer and discovered that
idel timer works outside the
On Martedì, set 16, 2003, at 11:35 Europe/Rome, Simon Urbanek wrote:
On Tuesday, September 16, 2003, at 10:24 AM, Stefano Iacus wrote:
It seems that RAqua consumes too much cpu time when doing nothing.
I can't see exactly why this is happening. We have few days to fix
this up. Any idea (after
Yes Brian is right.
It builds fine with the same tools you have Byron.
Just try to remove the built version of methods or do what Brian
suggested.
stefano
On Domenica, set 14, 2003, at 09:23 Europe/Rome, Prof Brian Ripley
wrote:
methods changed to use a NAMESPACE about last weekend. It does
a new version of RAqua is now available.
The major change for developers is that libR.dylib is now inside
/Applications/StartR.app/RAqua.app/Contents/Frameworks and at build
time the linker sets this path as install-name for libR.dylib
This only happens if you configure with flag --with-aqua
I forgot to mention that all the binary versions of the packages should
be rebuilt. The script is actually running, so you should wait tomorrow
for the packages to be updated on CRAN
stefano
On Sabato, set 13, 2003, at 14:07 Europe/Rome, Stefano Iacus wrote:
a new version of RAqua is now
we are trying to adapt the configure in order to work with latest
gcc3.3 (from apple) and g77 3.4 (from
http://gravity.psu.edu/~khanna/hpc.html )
At the moment there is no need to define the __DEBUGGING__ but there is
still a problem with the -lcc_dynamic
does any of you know how to check for
I have updated RAqua.pkg.sit on http://www.economia.unimi.it/R/
This version has one major improvement over the previouses: binary
package installation.
I have produced a small set of binary package that you can try to work
with.
During the next week or so we will arrange to build Bioconductor
I have slightly modified the quartz device. It's somewhat faster then
before even if a bit slower than the x11 one.
stefano
__
[EMAIL PROTECTED] mailing list
https://www.stat.math.ethz.ch/mailman/listinfo/r-devel
On Domenica, ago 17, 2003, at 21:36 Europe/Rome, Jan de Leeuw wrote:
RAqua now builds fine,
I have reverted then changes but I didn't touch anything at tcltk level.
I've also implemented the rest of the menu items.
quartz device works again for the command line version and hopefully
soon
Europe/Rome, Stefano Iacus wrote:
I've installed a timer in RAqua to do tasks at time interval.
I would like simply to let R call all the handlers installed (eg x11,
gtk, tcltk) on this time interval and return.
Which function whould I call?
stefano
On Mercoledì, ago 13, 2003, at 04:44 Europe/Rome, Jan de Leeuw wrote:
Small things, mostly.
1. Buildproblem. Well-known and annoying. Build fails if debugging is
on
(which is the default) because Debugging.h breaks devQuartz.c
compiles. If debugging is switched off on the command line or in
I have altered the code inside the aqua module replacing all apple's
debugging macros.
It should compile fine now with new app dev tool. Can anyone give it a
try?
stefano
__
[EMAIL PROTECTED] mailing list
I'm planning to move quartz device outside src/unix and put it in the
aqua module.
This will imply that it won't be possible to use it without loading the
aqua module (which is true in any case at the moment)
In any case as the quartz device requires event handling for resizing,
moving the
On Mercoledì, ago 13, 2003, at 18:26 Europe/Rome, Thomas Lumley wrote:
On Wed, 13 Aug 2003, Jan de Leeuw wrote:
Some additional suggestions:
If you install/update packages, the output can be viewed in the
Console application. Is that really the place where we want it ?
Good point. It's not
Thanks Byron, I assume you use new Devel Tool updates and nothing from
fink?
Can other people with new dev tools check this (for example Jan?)
It would be nice to update the instuction page (and R-admin in the
future)
some general notes:
1. there is no need to configure with --without-x as X11
As pointed out by Brian,
this is documented. BTW, it works fine with R-1.7.1 and the quartz()
device and in the forthcoming version of R for MacOS X which is the
Darwin port of R with the Aqua GUI (again, as pointed out by Brian, the
old Carbon port is now freezed).
stefano
On Lunedì, ago 4,
The current version of R-devel has internal support for
dlclose/dlopen/dlsym for Darwin.
Configure problems have also been solved thanks to Brian and Kurt.
Having or not libdl.0.dylib etc it is always the internal code that is
used.
Stefano
__
[EMAIL
I have put on http://www.economia.unimi.it/R/ a new version of RAqua
which has a better GUI and responds to drag and drop, copy and paste
etc (for more info see the above page).
Most of the menus are not working at the moment but any feedback is
welcome to design a good GUI for Darwin R.
On Martedì, giu 17, 2003, at 17:45 Europe/Rome, Simon Urbanek wrote:
On Tuesday, June 17, 2003, at 05:11 PM, Don MacQueen wrote:
The really native version doesn't really need to depend on X11
anymore since the use of X11 on Mac OS X was meant for applications
that are not properly ported to
I think we have to distinguish what is distributed as binary and the
building process of R.
If we distribute prebuilt packages for OSX we can provide both html and
pdf files and leave out latex help.
stefano
On Martedì, giu 17, 2003, at 19:33 Europe/Rome, Prof Brian Ripley wrote:
On Tue, 17
On Martedì, giu 17, 2003, at 20:13 Europe/Rome, Don MacQueen wrote:
At 6:33 PM +0100 6/17/03, Prof Brian Ripley wrote:
On Tue, 17 Jun 2003, Don MacQueen wrote:
At 5:45 PM +0200 6/17/03, Simon Urbanek wrote:
There is still one issue to consider in this context: source
packages. A really
On Domenica, giu 15, 2003, at 02:39 Europe/Rome, Jan de Leeuw wrote:
Does not use -L/sw/lib -dl anymore, so only works for those who have
libdl in /usr/local/lib
Cannot find _environ in linking libR.dylib (not sure where it normally
gets it). Does not seem to need it in linking R.bin.
I do not
, Jun 15, 2003, at 08:47 US/Pacific, Stefano Iacus wrote:
On Domenica, giu 15, 2003, at 02:39 Europe/Rome, Jan de Leeuw wrote:
Does not use -L/sw/lib -dl anymore, so only works for those who have
libdl in /usr/local/lib
Cannot find _environ in linking libR.dylib (not sure where it
normally
gets
At the url http://www.economia.unimi.it/R/
you can find the latest build of RAqua (which is a preview of what can
be the Aqua GUI for Darwin R).
Unstuff the archive RAqua.app.sit, drag the RAqua icon into the
Applications folder of your MacOS X System and double click on its icon
to launch R.
I think you are referring to the Carbon version of R. Btw, it is not a
bug.
In this case it is only a problem of the system because I do not force
refreshing. You should have better results using the quartz() device.
What I mean is that plot is done but the window content is not
refreshed
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