Re: [R-SIG-Mac] pdflatex not found! Not building PDF manual.

2024-02-27 Thread Spencer Graves
Hi, Marc: That's what I needed. Thanks. Spencer Graves On 2/27/24 3:05 PM, Marc Schwartz wrote: Dennis, Do you have a TeX installation on your Mac? pdflatex is typically installed with TeX, which for macOS is usually via MacTeX: https://tug.org/mactex/ Once you have that installed, you

[R-SIG-Mac] pdflatex not found! Not building PDF manual.

2024-02-27 Thread Spencer Graves
Hello: Running "devtools::check_win_devel()", I got, "pdflatex not found! Not building PDF manual." "sessionInfo()" below. Suggestions? Thanks, Spencer Graves sessionInfo() R version 4.3.2 (2023-10-31) Platform: aarch64-a

Re: [R-SIG-Mac] gfortran: command not found

2023-07-08 Thread Spencer Graves
Dear Prof. Ripley et al.: On 7/8/23 1:16 AM, Prof Brian Ripley wrote: On 08/07/2023 00:41, Spencer Graves wrote: Hello, Simon Urbanek and Professor Ripley: On 7/7/23 4:21 AM, Simon Urbanek wrote: On Jul 7, 2023, at 6:54 PM, Prof Brian Ripley wrote: An alternative is not to have

Re: [R-SIG-Mac] gfortran: command not found

2023-07-07 Thread Spencer Graves
ME/.R/Makevars-R_PLATFORM". ??? Thanks, Spencer Graves Thanks, Simon On 07/07/2023 00:07, Simon Urbanek wrote: On 7/07/2023, at 10:15 AM, Spencer Graves wrote: Hi, Simon: Thanks for this. I have more questions: On 7/6/23 4:52 PM, Simon Urbanek w

Re: [R-SIG-Mac] gfortran: command not found

2023-07-06 Thread Spencer Graves
ac and vice versa? This looks like a potentially similar thing to do from what I did. Is the effect of this different? If so, how? [Again, please feel free to ignore this question. I'm not eager to practice my "do-it-myself lobotomy" skills ;-] Thanks, Spencer Gra

Re: [R-SIG-Mac] gfortran: command not found

2023-07-06 Thread Spencer Graves
/bin" being number 12. Anyway, thanks again to Simon and Peter. Best Wishes, Spencer Graves Two things to note: 1. The directories in paths.d/* are added to those in /etc/paths in alphabetical order, so careful with older versions in /usr/local/bin. 2. Yo

Re: [R-SIG-Mac] gfortran: command not found

2023-07-06 Thread Spencer Graves
anks again very much. Spencer Graves [2] "support.apple.com" recommended "PATH=/bin:/sbin:/user/bin:/user/sbin:/system/Library/ export PATH", then "env". I did "env" to get the current path, than appended ":/opt/gfortran/bin" to that

Re: [R-SIG-Mac] gfortran: command not found

2023-07-06 Thread Spencer Graves
all went to "/opt/gfortran", and gcc is in "/usr/bin". What should I do to fix this? I downloaded and reinstalled "gfortran-12.2-universal.pkg". I did NOT see an option to install it anyplace else. Thanks, Spencer Graves -pd

[R-SIG-Mac] gfortran: command not found

2023-07-05 Thread Spencer Graves
org/bin/macosx/tools/;. I expected this to solve the problem. It didn't. Suggestions? Thanks, Spencer Graves p.s. This is my fork of KFAS, available at "https://github.com/sbgraves237/KFAS;. "sessionInfo()" appears below. ## sessionIn

Re: [R-SIG-Mac] macOS may not give R much time in a long compute

2023-02-18 Thread Spencer Graves
On 2/18/23 4:34 PM, Simon Urbanek wrote: On Feb 19, 2023, at 3:50 AM, Spencer Graves wrote: On 2/18/23 6:40 AM, Prof Brian Ripley wrote: Are you using R.app (you failed to say)? I'm "using the newest version of RStudio" [Version 2022.12.0+353 (2022.12.0+353)].

Re: [R-SIG-Mac] macOS may not give R much time in a long compute

2023-02-18 Thread Spencer Graves
ght be? Thanks very much. Spencer Graves [*] I'm not sure what threshold I was using when I encountered this problem: 180 or 1800 seconds. I foolishly didn't save the output that included lines like the following: iscan = 22992 ; et3i = 180 26 104 iscan = 32124 ; et3i

[R-SIG-Mac] macOS may not give R much time in a long compute

2023-02-18 Thread Spencer Graves
4 decided NOT to give time to R. Suggestions? Thanks, Spencer Graves sessionInfo() R version 4.2.2 (2022-10-31) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Big Sur 11.7.4 Matrix products: default LAPACK: /Library/Frameworks/R.framework/Versions/4.2/

Re: [R-SIG-Mac] sessionInfo on Monterey

2021-08-28 Thread Spencer Graves
ple-darwin17.0 (64-bit) Running under: macOS Big Sur 10.16 Hope this helps. Spencer Graves On 8/28/21 7:36 AM, peter dalgaard wrote: Odd indeed. A local build of mine has sessionInfo() R version 4.1.0 Patched (2021-05-25 r80389) Platform: x86_64-apple-darwin20.5.0 (64-bit) Runn

Re: [R-SIG-Mac] In svg("tst.svg") : failed to load cairo DLL

2021-08-07 Thread Spencer Graves
THANKS, Prof. Ripley. That fixed the problem. Spencer Graves [please excuse a problem with delayed detection of an error with autocomplete.] On 8/7/21 12:05 AM, Prof Brian Ripley wrote: Install (or re-install) XQuartz.  As the R-admin manual §4 says Various parts of the build require

Re: [R-SIG-Mac] In svg("tst.svg") : failed to load cairo DLL

2021-08-07 Thread Spencer Graves
This, Prof. Ripley. That fixed the problem. Spencer Graves On 8/7/21 12:05 AM, Prof Brian Ripley wrote: Install (or re-install) XQuartz.  As the R-admin manual §4 says Various parts of the build require XQuartz to be installed: see https://www.xquartz.org/releases.  These include the tcltk

[R-SIG-Mac] In svg("tst.svg") : failed to load cairo DLL

2021-08-06 Thread Spencer Graves
uot; in a new R session, I get a longer message; see below for that and for sessionInfo(). When I repeat "svg('tst.svg')", I get only "failed to load cairo DLL". Suggestions? Thanks, Spencer Graves svg('tst.svg') Warning messages: 1: In grSoftVer

Re: [R-SIG-Mac] [BULK] Re: INSTALL R 4.0.2

2020-12-03 Thread Spencer Graves
unless, of course, the segfault is part of the exam ;-) On 2020-12-03 15:59, Simon Urbanek wrote: R 4.0.2 and 4.0.3 are binary compatible and the latter fixes a rather important segfault on macOS, so I would not recommend anyone using R 4.0.2 on macOS ... On 4/12/2020, at 3:19 AM, Spencer

Re: [R-SIG-Mac] INSTALL R 4.0.2

2020-12-03 Thread Spencer Graves
If R 4.0.3 will do, that's easy to find via Google. If you absolutely need R 4.0.2, that's much less obvious. sg On 2020-12-03 07:08, Dr Eberhard W Lisse wrote: You are most welcome. The answer to your question lies probably also in Google. el On 03/12/2020

Re: [R-SIG-Mac] Problems with R and Big Sur

2020-12-02 Thread Spencer Graves
sg On 2020-12-02 11:48, Dr Eberhard W Lisse wrote: sudo xcode-select --install el On 2020-12-02 18:52 , Spencer Graves wrote: $ clang --version Apple clang version 11.0.3 (clang-1103.0.32.59) Target: x86_64-apple-darwin20.1.0 Thread model: posix InstalledDir: /Applications/Xcode.app

Re: [R-SIG-Mac] Problems with R and Big Sur

2020-12-02 Thread Spencer Graves
pp Store. Thanks, Spencer On 2020-12-02 08:18, Gilberto Camara wrote: For me, it worked as follows sudo rm -rf /Library/Developer/CommandLineTools sudo xcode-select —install Best Gilberto On 2 Dec 2020, at 15:15, Spencer Graves wrote: What should I do to "make

Re: [R-SIG-Mac] Problems with R and Big Sur

2020-12-02 Thread Spencer Graves
What should I do to "make sure to have installed the latest version of Apple's development environment, including version 12.0 of the compiler"? Thanks, Spencer Graves On 2020-12-02 07:36, GilbertoCamara wrote: Dear all, I am running R 4.0.3 on BigSur wit

Re: [R-SIG-Mac] Problems with R and Big Sur

2020-12-02 Thread Spencer Graves
I didn't get this with R 4.0.3 under macOS Big Sur 11.0.1 with "time R CMD build" / check. I have not tried it under RStudio. sg On 2020-12-02 05:01, Dr Eberhard W Lisse wrote: I don't get this in 4.0.3 (using the command line version of R) and I don't get this in RStudio

Re: [R-SIG-Mac] Catalina Crashes R

2020-06-01 Thread Spencer Graves
  I have 10.15.4, and I don't notice any serious problems.  I just did "install.packages('KernSmooth')" and "help(pac='KernSmooth')" to look at the DESCRIPTION file, without a problem.   Spencer Graves On 2020-05-21 09:49, Joseph Vanterpool wrote: Hello, Yester

Re: [R-SIG-Mac] obsolete LaTeX software in "R CMD check" on Mac?

2020-05-17 Thread Spencer Graves
to Ken Beath, Peter Dalgaard, Eberhard W Lisse, Berend Hasselman, marc Schwartz, Adrian Dușa, and everyone else who took the time to consider the question.  This had been a problem for me since at least early February.  It's good to have it fixed.   Spencer Graves On 2020-05-17 02:11, pet

Re: [R-SIG-Mac] obsolete LaTeX software in "R CMD check" on Mac?

2020-05-16 Thread Spencer Graves
On 2020-05-15 03:34, peter dalgaard wrote: On 15 May 2020, at 06:04 , Spencer Graves wrote: Hi, Peter et al.: I'm still overwhelmed. To limit changes to things I think I understand, my '/usr/local/texlive' directory contains subdirectories 2014, 2015, 2016, 2020

Re: [R-SIG-Mac] obsolete LaTeX software in "R CMD check" on Mac?

2020-05-14 Thread Spencer Graves
All had "2016".  I'm inferring from your comments that if anything I do calls any of those 451 operations like "a2ping", I will get "not found".  If I get that, I gather I'm supposed to "sudo rm /usr/local/bin/a2ping" and hope that solves the problem.

Re: [R-SIG-Mac] obsolete LaTeX software in "R CMD check" on Mac?

2020-05-13 Thread Spencer Graves
) so a brew upgrade brew cask upgrade will sort me out btw, I just looked and brew cask install uninstallpkg will do the deed nicely. el On 2020-05-13 23:31 , Spencer Graves wrote: Thank you all for your comments on this. I'm overwhelmed, not just with the volu

Re: [R-SIG-Mac] obsolete LaTeX software in "R CMD check" on Mac?

2020-05-13 Thread Spencer Graves
t find the key to that padlock, so I used something that seems more like boltcutters instead -- and it worked.       Thanks again,   Spencer Graves On 2020-05-13 09:57, Dr Eberhard W Lisse wrote: Peter, as far as I understand this the idea is to make the binaries of wha

Re: [R-SIG-Mac] obsolete LaTeX software in "R CMD check" on Mac?

2020-05-13 Thread Spencer Graves
o find "/Library/TeX/texbin/pdflatex" on my hard drive, but "which pdflatex" doesn't find it.       Thanks,       Spencer Graves On 2020-05-13 01:31, peter dalgaard wrote: You typically need to ensure that you have the right TeX installation in your PATH (and not an older

Re: [R-SIG-Mac] obsolete LaTeX software in "R CMD check" on Mac?

2020-05-12 Thread Spencer Graves
ht you have other suggestions?   Thanks very much for eliminating one possible source of this problem.   Spencer Graves On 2020-05-12 20:12, Ken Beath wrote: Your package passes checks on my machine perfectly. It has R 4.0.0 with RStudio and TexLive 2020 with updates to a week or two

[R-SIG-Mac] obsolete LaTeX software in "R CMD check" on Mac?

2020-05-12 Thread Spencer Graves
ackexchange.com/questions/543783/package-textcomp-error-symbol-textasciigrave-not-provided   Comments?   Thanks,   Spencer Graves p.s.  An earlier post on this issue to r-pkg-devel is copied below. Forwarded Message Subject:[R-pkg-devel] Error: Symbol \t

Re: [R-SIG-Mac] Please test R 4.0.0 pre-releases!

2020-04-02 Thread Spencer Graves
  Is there a procedure for dual install, e.g., so I could run "R4 CMD check", etc.?   Please excuse if this has already been answered.   Thanks,       Spencer Graves On 2020-04-02 02:50, Rainer M Krug wrote: On 1 Apr 2020, at 16:07, Patrick Schratz wrote: The

[R-SIG-Mac] dir only shows some of what's there

2020-03-12 Thread Spencer Graves
s.rda" > > (fdaRev.data <- file.path(wd0, 'fda-revision', +    'data')) [1] "/Users/sbgraves/Documents/current/R/fda/fda-revision/data" > dir(fdaRev.data) [1] "gait.rda"    "melanoma.rda"    "nondurables.rda"   

Re: [R-SIG-Mac] Using R on MacOS Catalina.....

2020-01-28 Thread Spencer Graves
have had problems with this a few years ago, but I haven't had a problem recently.  However, I may misunderstand your question.   Spencer Graves On 2020-01-28 23:58, Patrick Schratz wrote: Why not use the official installer and adjust the installation path? https://cran.r-project.org/bi

Re: [R-SIG-Mac] Finding "bash" and "mv" on my hard drive?

2020-01-17 Thread Spencer Graves
> Sys.which(c("bash", "mv"))    bash  mv "/bin/bash"   "/bin/mv"   Thanks.   It answers the question I asked, but sadly doesn't solve the problem.   Thanks again,   Spencer Graves On 2020-01-17 17:28, Bert

[R-SIG-Mac] Finding "bash" and "mv" on my hard drive?

2020-01-17 Thread Spencer Graves
ersions of "git".  I'm not sure, but I believe that "R CMD check" uses versions of "bash" and "mv" different from "/bin/bash" and "/bin/mv".       Thanks,       Spencer Graves ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] R CMD build "cannot open compressed file" with R 3.6.2

2020-01-01 Thread Spencer Graves
issue resolution" email).       Spencer Graves On 2019-12-25 13:18, Spencer Graves wrote: On 2019-12-25 12:02, Jeff Newmiller wrote: "Permission denied" suggests that this is not related to R. Perhaps you ran R with elevated permissions yesterday? On December 25, 2019 8:37:36 AM

[R-SIG-Mac] R CMD build "cannot open compressed file" with R 3.6.2

2019-12-25 Thread Spencer Graves
d this?   Thanks,   Spencer Graves $ R CMD build Ecfun * checking for file ‘Ecfun/DESCRIPTION’ ... OK * preparing ‘Ecfun’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... OK * checking for LF line-endings in source and

Re: [R-SIG-Mac] Installing the "jpeg" package?

2019-11-02 Thread Spencer Graves
On 2019-11-02 01:51, David Winsemius wrote: On 11/1/19 8:03 PM, Spencer Graves wrote: Hello, All:   How can I get the dev files for libjpeg installed under macOS 10.15.1 Catalina? You probably have the right tools, but it wouldn't hurt to check: https://cran.r-project.org/bin

[R-SIG-Mac] Installing the "jpeg" package?

2019-11-01 Thread Spencer Graves
as a binary or from sources;  see below.   Suggestions?   Thanks,   Spencer Graves > update.packages() jpeg :  Version 0.1-8 installed in /Library/Frameworks/R.framework/Versions/3.6/Resources/library  Version 0.1-8.1 available at https://cran.rstudio.com Up

Re: [R-SIG-Mac] update.packages() cannot install from source

2019-10-29 Thread Spencer Graves
it.)   Thanks again,   Spencer Graves On 2019-10-29 16:12, Balamuta, James Joseph wrote: Greetings and Salutations, Note that Xcode Command Line Tools is not the same as Xcode IDE. In fact, only Xcode CLI Tools are required, which are light-weight compared to the IDE. Regarding your error

[R-SIG-Mac] update.packages() cannot install from source

2019-10-29 Thread Spencer Graves
m like this.  And if yes, and if they've fixed it, what did they do to fix it?   Thanks,   Spencer Graves ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] Catalina and gfortran (also: My silliness)

2019-10-10 Thread Spencer Graves
  Catalina advertised that it would no longer accept 32 bit applications.   Isn't there a 64 bit version of gfortran to use with Catalina?   Spencer Graves On 2019-10-10 10:36, Erich Subscriptions wrote: gfortran 6.1 from the tools directory (which I simply did not notice) did

Re: [R-SIG-Mac] Where is "sh" used by "R CMD check"?

2019-09-20 Thread Spencer Graves
Hi, Marc:  Thanks.  I got exactly the same two answers as you got. Now I need to get back with Bitdefender to figure out what to do with that information.  Spencer On 2019-09-20 16:14, Marc Schwartz wrote: On Sep 20, 2019, at 5:02 PM, Spencer Graves wrote: Hello: How can I find

[R-SIG-Mac] Where is "sh" used by "R CMD check"?

2019-09-20 Thread Spencer Graves
able to add it to a "white list" maintained by the antivirus.  Sadly, I don't know where it is.   Thanks,   Spencer Graves ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] point size in svg

2019-07-14 Thread Spencer Graves
6.1 > On 2019-06-24 04:10, peter dalgaard wrote: Works fine for me on 10.14.5, both with CRAN-supplied 3.6.0 and locally compiled 3.6.0 Patched (2019-06-23 r76734). I suspect that you might have a font misconfiguration of sorts on your Mojave machine. -pd On 24 Jun 2019, at 09:25 , Spencer

Re: [R-SIG-Mac] point size in svg

2019-06-24 Thread Spencer Graves
nt version of R under the current version of macOS. � Spencer On 2019-06-24 00:59, David Winsemius wrote: >> On Jun 23, 2019, at 10:04 PM, Spencer Graves >> wrote: >> >> Hello, All: >> >> >>I'm unable to control font size in plots cre

[R-SIG-Mac] point size in svg

2019-06-23 Thread Spencer Graves
same computer probably last fall, and the font size looks reasonable -- better than what I get today.  I'm not 100 percent sure, but I think I was able to control the font size with the cex and cex.axis arguments with those earlier versions of R and macOS.   Suggestions?   Thanks,   Spenc

Re: [R-SIG-Mac] clang: error: unsupported option '-fopenmp'

2019-05-07 Thread Spencer Graves
g around on some users systems. It was easier to clean the system and, then, install the toolchain relative to R. Sincerely, JJB On 5/7/19, 10:24 AM, "Spencer Graves" wrote: Hi, JJB: Thanks. Upon reading more carefully "https://cran.r-proj

Re: [R-SIG-Mac] clang: error: unsupported option '-fopenmp'

2019-05-07 Thread Spencer Graves
error as before without that.  I don't recall ever modifying a path on a Mac before, and I don't find the "~/.Renviron" file you mentioned.   Thanks,   Spencer Graves p.s.  I'm also a little spooked by your instructions to remove gfortran, because it might be used by something

Re: [R-SIG-Mac] clang: error: unsupported option '-fopenmp'

2019-05-07 Thread Spencer Graves
00gn/T/Rtmp7TLdXk/Rinst6842b1d5fb3/bssm’   --- ERROR: package installation failed   Suggestions?   Thanks,   Spencer On 2019-05-06 18:19, Byron Ellis wrote: > Hi Spencer, > > You'll want to get the compiler tools from > h

[R-SIG-Mac] clang: error: unsupported option '-fopenmp'

2019-05-06 Thread Spencer Graves
Hello, All:   I'm getting "clang: error: unsupported option '-fopenmp'" when trying to build "https://github.com/helske/bssm; under macOS 10.14.14 with R 3.6.0;  see below.   What do you suggest?   Thanks,   Spencer Graves p.s.  Helske told me he thou

[R-SIG-Mac] How can I find the "sh" application used by "R CMD check" on a Mac?

2019-02-19 Thread Spencer Graves
permanently, I need to know where it is on my hard drive.   Thanks,   Spencer Graves ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

[R-SIG-Mac] how to install RODBC on macOS Sierra 10.12.4?

2017-05-05 Thread Spencer Graves
session to build all the frameworks and demo applications: $ cd mac $ make" I just did "$ cd mac" and got, "-bash: cd: mac: No such file or directory". Evidently, I need to substitute something for "mac" here, but I don't know what. Sugges

Re: [R-SIG-Mac] svn update > "xcrun: error: invalid active developer path" after uipgrade to 10.11 El Capitan

2015-10-17 Thread Spencer Graves
On 10/16/2015 3:15 AM, Prof Brian Ripley wrote: On 16/10/2015 09:06, Spencer Graves wrote: Hello: I'm having a problem with "svn update" (with R-Forge) that may be due to a recent upgrade to OS X 10.11 El Capitan. I'm getting the following: $ svn update xcrun: erro

[R-SIG-Mac] svn update > "xcrun: error: invalid active developer path" after uipgrade to 10.11 El Capitan

2015-10-16 Thread Spencer Graves
Hello: I'm having a problem with "svn update" (with R-Forge) that may be due to a recent upgrade to OS X 10.11 El Capitan. I'm getting the following: $ svn update xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at:

Re: [R-SIG-Mac] Experiences with El Capitan

2015-10-13 Thread Spencer Graves
, it fixed the problem. Thanks. (My Father once said, "That not only hit the spot, it erased it.") Best Wishes, Spencer Roy On Oct 12, 2015, at 7:58 PM, Spencer Graves<spencer.gra...@prodsyse.com> wrote: On 10/12/2015 8:51 PM, Kevin Ushey wrote: The simplest

Re: [R-SIG-Mac] Experiences with El Capitan

2015-10-12 Thread Spencer Graves
g xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun Thanks again for your prompt reply. Other suggestions? (All this worked before I upgraded to OS X 10.11.) Spencer Kevin On Mon,

[R-SIG-Mac] R 3.2.2 install problems under OS X 10.10.3

2015-08-17 Thread Spencer Graves
0.98.1103.) What do you suggest I do to fix this problem? Thanks, Spencer Graves Problem Details and System Configuration Process: R [569] Path: /Applications/R.app/Contents/MacOS/R Identifier:org.R-project.R Version

[R-SIG-Mac] “pdflatex is not available” from “R CMD check”

2015-02-22 Thread Spencer Graves
. 1. How can I determine if pdflatex is installed? 2. If it is, how can I find it? If it’s not, what i the recommended install procedure? Thanks Spencer Graves ## R CMD check … ... * checking PDF version of manual