Hi Jimmy,
Thanks for your active help, i did download the TPP_Setup_v4_6_2 and again
ran the PeptideProphetParser.exe on same pep.xml file its working fine.
warm regards,
puneet
On Sat, Sep 28, 2013 at 9:43 PM, Jimmy Eng wrote:
> Puneet,
>
> https://groups.google.com/forum/#!topic/comet-ms/
Puneet,
https://groups.google.com/forum/#!topic/comet-ms/jUhIR5zWWcU
For Comet support, you need to be using TPP version 4.6.2 or newer. The
current release is 4.6.3. You're current running 4.5.2. I just ran
PeptideProphetParser from version 4.6.3 on your file and it processed fine.
- Jimmy
Dear jimmy,
Hearty thanks for replying on my problem, yes there are both target and
decoy peptides available in 54ProtMix_S1R1.pep.xml file but still its
giving this error.
i have forwarded you the files please have a look on it .
regards,
puneet
On Sat, Sep 28, 2013 at 9:09 PM, Jimmy Eng wr
Are there peptide IDs in your 54ProtMix_S1R1.pep.xml file? The error
message is suggesting that there aren't any. If you don't know how to
tell, you can email me that pep.xml file and I'll take a look.
- Jimmy
On Fri, Sep 27, 2013 at 10:32 PM, Punit Kadimi wrote:
> Hello
>
> I tried to run p
Hello
I tried to run peptide prophet on a Comet .pep.xml output file but peptide
prophet is giving some error message.
I am unable to figure out the problem.
i am briefing out the process.
(1) Searched a data set with comet.2012013.win64.exe using concatenated
database search option.
(2) run
Hello
I tried to run peptide prophet on a Comet .pep.xml output file but peptide
prophet is giving some error message.
I am unable to figure out the problem.
i am briefing out the process.
(1) Searched a data set with comet.2012013.win64.exe using concatenated
database search option.
(2)
