vices//You can read about some of the other codes we've analysed here //https://pop-coe.eu/target-customers/success-stories"/
Is there any volunteer for trying this?
It is probably interesting try on both standard desktops and HPC servers.
Cheers
Bruno
On 03/14/2017 03:50 PM, Bruno Char
Public bug reported:
The documentation of Ip2_JCFpmMat_JCFpmMat_JCFpmPhys contains a
reference [Duriez2016]_ this label does not exist. I found that through
the compile warnings. Can you please check Jerome?
** Affects: yade
Importance: Undecided
Status: New
--
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Done, thanks.
And congrats! :)
Bruno
On 03/08/2017 11:48 AM, Christian Jakob wrote:
@phdthesis{Jakob2016,
author = {Christian Jakob},
school = {TU Bergakademie Freiberg},
title = {Numerische Modellierung des Verflüssigungsverhaltens von
Kippen des Braunkohlenbergbaus beim und nach
Anyway, I'm comiting your fix in the meantime.
https://github.com/yade/trunk/commit/1c80962e10d88ead0c3707e449624db7dc0af149
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Title:
DFNflow
Hi Robert,
I was about to commit your fix, then I had another another guess.
Could you remove the pass-by-reference for the facet circulator in the
function's signature?
void DFNFlowEngine::trickPermeability(RTriangulation::Facet_circulator facet,
...)
instead of
void
Hi,
I agree that it sounds like some sort of gcc bug, or maybe a bug in circulators
implementation.
Two versions of a code doing obviously the same thing but one of them crash,
I've seen that before.
If I have a chance I'll send you a short "hello world" program with c++/cgal to
see if you can
On 02/23/2017 11:24 PM, Robert Caulk wrote:
> 195: RTriangulation::Facet_circulator facet1 =
> Tri.incident_facets(*edge);
>
> This is where I believe there may be a problem. facet1 does not appear
> to be the address of a facet, instead it appears to be the circulator.
The "circulator" is just an
Assignee: (unassigned) => Bruno Chareyre (bruno-chareyre)
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Title:
DFNflow crashes for compiled trunk but not non-optimized debug
compiled tr
You are speaking of the non-periodic case, aren't you?
It seems it is using the pre-processor "TriaxialTest", I can imagine that this
old lady is not giving exactly what it was years ago, then maybe the bad
results you get.
It should not be too difficult to test what the curretn code is doing,
Interesting. There is still more than one difference between the two lines.
Could you find which change shows the problem?
B
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Title:
Hi, what you describe in #2 sounds ok, in principle.
Since there are many other changes compared to the original script I can't tell
if this is really the origin of your problem.
You may try to start again from the original script and re-apply each change to
see when the problem appears.
B
--
er is still very limited, so _if someone is willing to
participate to the package management please let us know_.
Happy new year to all yade-user's and yade-dev's!
Bruno Chareyre
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Tél : +
Dear Anton,
Thank you very much for this message.
I appreciate that your commitment is still significant even after a
significant decrease. :)
This is (and was) of great help for us all.
I will try and go through the open issues, and we will try to fix the
builder issues here.
Besides, I
Dear Robert,
It is impressive, I did not expect this to be so easy.
Thank you very much for sharing this.
If you like the idea of (1) integrating the guide in yade's doc
(pdf/html) the question is: what is the type of the source file
(doc/tex/...)?
If too difficult we can always (2) include a
Hello,
Hardware issue here, we will move to a new one.
Happy new year Yade-Dev's. :)
Bruno
On 01/02/2017 08:05 PM, Anton Gladky wrote:
Yea, it looks like the buildbot does not build docs and Yade itself.
Remi, could you please have a look?
Thanks
Anton
2017-01-02 19:39 GMT+01:00 Jerome
On 11/25/2016 06:46 PM, Jerome Duriez wrote:
Hi,
In pkg/pfg/FlowEngine.ipp.in, why do volumeCell() return directly a
"volume" value [1], whereas other volumeCell*Fictious() functions
return the std::abs() of "volume" [2] ?
Volume [1] is a signed volume and theoreticaly - at least - the
rk::surfaceSolidThroatInPore() for partial solid surfaces
> per half-throat
>
>
> revno: 3953
> committer: Bruno Chareyre <bruno.chare...@grenoble-inp.fr>
> timestamp: Mon 2016-10-24 13:17:04 +0200
> mess
Good one, thanks.
The shape test is, I think, ok. The only problem is that it may in fact
accept something such as a wall-wall interaction, it would be better to
test geometryIndex1 == geometryIndex2 == sphereIndex.
Bruno
On 17 October 2016 at 18:46, Jérôme Duriez
** Changed in: yade
Status: New => Confirmed
** Changed in: yade
Importance: Undecided => Medium
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Title:
CapillaryTriaxialTest
Hi Jérôme,
I do not post on the bug purposely, because this is not a very technical
discussion.
My suggestion is to keep the bug open until someone will fix. Removing a
feature is not a nice way to fix.
I believe no interaction loop is not the real problem since it used to work
even without this
Hello, I didn't see any reply yet. Re-sending in case it has been
overlooked.
Bruno
On 13 October 2016 at 10:38, Bruno Chareyre <bruno.chare...@grenoble-inp.fr>
wrote:
> Hello Boon,
> Could you please help me understand what's going on with clumps?
> I see a new "n
No need to remove, it should work. The bug is real, hiding it will not help.
B
On 17 October 2016 at 18:54, Jérôme Duriez
wrote:
> Regarding this bug, I think the CapillaryTriaxialTest preprocessor does
> not add much to Yade now (even in a working state), and propose
A problem in building the doc it seems. Which debian/ubuntu system would
be best to try this out?
Bruno
On 10/12/2016 11:28 PM, Anton Gladky wrote:
Hi all,
there is definitely a problem with yade and coming ipyhon5 [1].
Has anybody time and wish to let yade work with ipython5?
[1]
Hello Boon,
Could you please help me understand what's going on with clumps?
I see a new "nonSpherical" version of updateProperties() (used here [1])
which does not seem to be related to potential blocks specifically. Did
you consider possible side effects? Why was the previous
I confirm the bug conceptually (did not reproduce).
Call it memory leak...
Did you realize that incidentaly or have you seen an anomalous growth of
interaction number in a simulation?
I wonder how it can be solved without hacks. The notion of multiple
physical interactions between two bodies
3-16 8:28 AM
*To:* Yade developers
*Subject:* [Yade-dev] [Branch ~yade-pkg/yade/git-trunk] Rev 3937:
Update citing_yade.bib
revno: 3937
author: Bruno Chareyre <bruno.chare...@grenoble-inp.fr>
committer: GitHub <nore...@github.com
Excellent! Congrats for compiling with coinor-* packages.
Could you be more specific on the second part? Do you mean that you need
those functions and that they are no longer available/doing what they
should?
Bruno
On 09/25/2016 12:04 PM, Chia Weng Boon wrote:
Good news! Potential Blocks is
Thank you very much for explanation. Sorry if I've been reverting too
hastly.
Did you test this "and others" within yade doc and if a few variant
bibtex style?
Just to be sure it will not produce further jokes.
B
On 09/23/2016 05:29 PM, Jerome Duriez wrote:
Hi Bruno,
It is about paper
t seems. How are you compiling?
Which bibtex style?
Bruno
[1] https://www.yade-dem.org/doc/publications.html
On 09/23/2016 01:24 PM, Bruno Chareyre wrote:
Dumb me! I should read twice.
Now I understand the problem Smilauer _and_ et al.
Still the solution is not right. We must really display "
Dumb me! I should read twice.
Now I understand the problem Smilauer _and_ et al.
Still the solution is not right. We must really display "Smilauer et al.".
Bibtex experts around?
B
On 09/23/2016 12:56 PM, Bruno Chareyre wrote:
Hi Jérôme,
I don't understand this commit. Why do you wan
Great! Thanks.
B
On 09/21/2016 09:32 PM, nore...@launchpad.net wrote:
revno: 3935
committer: jduriez
timestamp: Wed 2016-09-21 10:48:23 -0600
message:
Capillary scripts commit
Confirmed with yadedaily.
Do you remember the latest commits where changes have been made?
Bruno
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Title:
CapillaryTriaxialTest preprocessor
Hi Jérôme,
I don't understand this commit. Why do you want to avoid "et al."?? It
is a very well accepted convention.
Anyway, it is too late to change it, the document has been online for
months.
It appears with "et al." using the DOI
(https://dx.doi.org/10.5281/zenodo.34045), for instance.
09/16/2016 07:22 PM, Anton Gladky wrote:
I have some thoughts about initial sort. It looks like
insertion sort is not especially good if the list is not
pre-sorted. For that case it looks like merge sort should
work much better.
Regagrds
Anton
2016-09-16 17:43 GMT+02:00 Bruno Chareyre &l
6 09:42 AM, Eulitz, Alexander wrote:
Hi Bruno,
do you think that the problem exists for a while or when did openMP
issues arise?
regards
Alex
*Von:*Yade-dev
[mailto:yade-dev-bounces+alexander.eulitz=iwf.tu-berlin...@lists.launchpad.net]
*Im Auftrag von *Bruno Chareyre
*Gesendet:* F
ved by
> more elegant way.
>
> [1] https://github.com/yade/trunk/commit/07940b52ac31597c07d9d98f289131
> 1d7e6d8e0e
>
> Cheers
>
> Anton
>
>
> 2016-09-15 19:23 GMT+02:00 Bruno Chareyre <bruno.chare...@3sr-grenoble.fr
> >:
> > Hello all,
> >
1400
7174500us 24.39%
TOTAL 29415483us 100.00%
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Email too brief?
Here's why! htt
at 1:17 AM +0800, "Bruno Chareyre"
<bruno.chare...@3sr-grenoble.fr
<mailto:bruno.chare...@3sr-grenoble.fr>> wrote:
On 09/06/2016 03:47 PM, Chia Weng Boon wrote:
Dear Bruno,
Yes it is working as expected. I have shared the codes since
March, but
Dear Stefano, that is a very good feedback indeed.
You see how beneficial all this is. :)
At this point it seems that the right answer to those students was "Yes,
it is available".
Bruno
On 09/06/2016 05:48 PM, Stefano Utili wrote:
Dear Bruno,
Thank you for your reply. I was at the DEM 7
On 09/06/2016 03:47 PM, Chia Weng Boon wrote:
Dear Bruno,
Yes it is working as expected. I have shared the codes since March,
but it is still not in the public domain. So, I was wondering if
there are any difficulties faced by YADE's administrators to make it
available. I thought it
he sharing of the code easier.
Boon
*From:* Chia Weng Boon on behalf of Chia Weng Boon
<chiaweng.b...@oxfordalumni.org>
*Sent:* Sunday, September 4, 2016 11:15:17 PM
*To:* Jan Stránský; Bruno Chareyre; stefano utili;
pt of Civil Engineering
+1 403 220 7367
*From:* Yade-dev
<yade-dev-bounces+jerome.duriez=ucalgary...@lists.launchpad.net> on
behalf of Bruno Chareyre <bruno.chare...@grenoble-inp.fr>
*Sent:* July-28-16 11:06 AM
*To:* y
Hi Jérôme,
Strictly speaking the doc is right: "Energy provided by boundaries" does
not tell if the boundaries provide energy to the sample or to the outside.
I agree that it is probably more common to define "external work input"
as an input _to_ the sample, yet overall it remains a matter
e
University of Calgary, Dpt of Civil Engineering
+1 403 220 7367
*From:* Yade-dev
<yade-dev-bounces+jerome.duriez=ucalgary...@lists.launchpad.net> on
behalf of Bruno Chareyre <bruno.chare...@grenoble-inp.
Thanks Jerome,
Fixed here (and a FIXME for the other version):
https://github.com/yade/trunk/commit/228c365076879e7133deb66be80f38dadbc3f0d7
Bruno
On 23 July 2016 at 00:31, Jerome Duriez wrote:
> Hello,
>
>
> Currently Law2_ScGeom_CapillaryPhys_Capillarity may erase
Hi Jérôme,
O.tags contain whatever you like in terms of named data (e.g. version/date of
the script that was used to produce one particular scene).
If you see O.tags['params'] as a memory of which parameters were used (it is
obviously not the sole purpose) you realize that forgetting history
For aspherical bodies you must impose the angular momentum instead of the spin.
It is true that it can be overlooked big time...
One fix could be to update the momentum automatically when the spin is modified.
The only overhead-free solution is to improve the documentation though.
Bruno
--
You
diff-a9ab7d00ca6a2a7ea83f9c204767ae3cR91
and
https://github.com/woodem/woo/commit/9cc29d813641bae0f79e0c0ffe653b91ea5bd381
.
AFAICT it was fixed in more recentish versions of gcc/glibc again.
HTH, Václav
2016-06-13 11:55 GMT+02:00 Bruno Chareyre
<bruno.chare...@grenoble-inp.fr>:
/usr/include/vtk-6.0
Next problem after switching back to Qt4:
/In file included from /usr/include/vtk-6.0/vtkTriangle.h:26:0,//
// from
/home/3S-LAB/bchareyre/yade/yade-git/trunk/pkg/dem/VTKRecorder.cpp:16,//
// from
/home/3S-LAB/bchareyre/yade/yade-git/build1404/pkg.11.cpp:7://
-error during first Yade start.
Regards
Anton
2016-06-13 10:36 GMT+02:00 Bruno Chareyre <bruno.chare...@3sr-grenoble.fr>:
Hi,
I don't know if a few tips are missing in the doc or if I'm missing
something stupid.
I was compiling yade on Trusty for the first time and I observed the
following thi
4
[INSTALL] libqt5x11extras5-dev:amd64
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e Duriez, Research Associate
University of Calgary, Dpt of Civil Engineering
+1 403 220 7367
*From:* Yade-dev
<yade-dev-bounces+jerome.duriez=ucalgary...@lists.launchpad.net> on
behalf of Bruno Chareyre <bruno.ch
one else's habits.
In the end, do we agree we keep all the interactions in the loop ?
Jerome
*From:* Yade-dev
<yade-dev-bounces+jerome.duriez=ucalgary...@lists.launchpad.net> on
behalf of Bruno Chareyre <bruno.chare
Hi Anton,
Interesting change, did you benchmark it?
I see insertion, deletion, find, all have different costs. Since the number
of interaction per body is typically low I wonder how the nominal costs
apply.
Bruno
On 7 June 2016 at 23:46, wrote:
>
In [1] it was a good move to remove the periodic barrier.
Filtering spheres is another independent question and I don't see a
clear reason for that (testing isDynamic was maybe a bit hacky but less
restrictive finally).
Making split=0 and split=1 return the same thing [2] sounds good, but
the
On 05/27/2016 05:22 AM, nore...@launchpad.net wrote:
revno: 3874
committer: jduriez
=== modified file 'pkg/dem/Shop_02.cpp'
+ if(
It makes sense indeed.
The dynamic check was probably a loose evaluation of shape, now redundant.
Bruno
On 05/20/2016 11:30 PM, Jerome Duriez wrote:
Hi,
getSpheresVolume() currently skips all dynamic bodies before even
considering whether they are spheres or not [*]. I think it would you
On 05/11/2016 01:52 PM, Klaus Thoeni wrote:
I think sooner or later we should get rid of the current ChainedCylinder
implementation.
Agreed
But you are right, the algorithms are slightly different,
although it might just the physics (?). I haven't compared the code yet but I
added two
Hi all,
Reading Klaus' answer below I realize that replacing "cylinder" by "grid
connection" will not help to intuitively recognize which class can be
used to modelize a single cylinder.
I wonder how it could be improved. Beyhond renaming GridConnection
(still an option), we could make
It sounds good to me if the identifier has a meaning.
Bruno
On 04/19/16 22:13, Anton Gladky wrote:
Dear all,
I am planning to release new Yade version soon, because
the 1.20.0 was released about 6 months ago and we have
over 120 commits now.
Some projects now are using the following
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6:44 -
From: Yade developers <nore...@launchpad.net>
Reply-To: Yade developers <nore...@launchpad.net>
To:
Hello Bruno Chareyre,
Yade developers has a new message requiring your approval.
Subject: Fw: new message
Author name: Michal Nitka
Author url:
Hi Boon,
Thank you for progress report!
On 16/03/16 16:37, Chia Weng Boon wrote:
> I have also changed some of the existing files to make it compatible with
> my old files. Please update and modify it accordingly if you think there
> is a better way to do it.
> ScGeom: I took away the twist
On 17/03/16 17:11, Chia Weng Boon wrote:
> In fact, there had been some changes in YADE's main program that I had
> to modify my old code, to make it work. I mentioned those few
> regressions, so that active developers are able to identify them and
> fix it.
You did well. if you have example
de.launchpad.net/~yade-pkg/yade/git-trunk/+edit-subscription
>
>
> ___
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> Post to : yade-dev@lists.launchpad.net
> Unsubscribe : https://launchpad.net/~yade-dev
> More help : https://help.launchpad.net/L
I don't know how launchpad handles spammers, can we ban some accounts on
the mailing lists we are managing?
I don't think restricting posting rights of everyone but team members is
the right way to solve the problem. It has to remain open access IMO.
Bruno
On 13 February 2016 at 13:25, Anton
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january!
Still reviewing...
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may have miss, please let me know.
Cheers
Bruno
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Public bug reported:
O.forces.f(clumpId) will always return a null vector with parallel build.
Probably simply because there is no forces.sync() after the summary force is
computed.
Calling forces.sync() all the time for the sole purpose of getting "read
rights" on clump force is overkill. We
-Université Laval
> Québec, QC, Canada
>
> **
>
>
>
> Please consider the environment before printing this E-mail.
>
>
>
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> [mailto:yade-dev-bounces+alexander.eulitz=iwf.tu-berlin...@lists.launchpad.net]
> *Im Auftrag von *Bruno Chareyre
> *Gesendet:* Montag, 7. Dezember 2015 15:44
> *An:* Yade Development Group
> *Betreff:* [Yade-dev] no X rendering
>
>
>
> Hi there,
> Today I start yade and I have no X
ad, that you solved it, but it is strange behavior. What distribution
> do you use? There is some more info in "man xauth".
>
> Regards
>
> Anton
>
>
> 2015-12-09 15:21 GMT+01:00 Bruno Chareyre <bruno.chare...@3sr-grenoble.fr>:
>> Absolutely correct, tha
On 08/12/15 07:30, Klaus Thoeni wrote:
> Hi guys,
>
> I am about to push the pfacet code (as a Xmas present) but before I wanted to
> discuss the following:
>
> 1) The utils module is massive and I suggest that we move everything related
> to cylinder, grids and pfacets in a new file, e.g.
https://bbs.archlinux.org/viewtopic.php?id=13189)//
/
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See also "where should I publish my software?":
http://www.software.ac.uk/resources/guides/which-journals-should-i-publish-my-software
On 04/10/15 18:33, Bruno Chareyre wrote:
>
>
> On 4 October 2015 at 18:26, Bruno Chareyre
> <bruno.chare...@3sr-grenoble.fr
>
helping researchers to deal with their computing tools) and the
> journal softwarex (where YADE could be presented ?)
>
> I could not get it..
>
> Jerome
>
> --
> *From:* Yade-dev [yade-dev-bounces+jerome.duriez=
> ucalgary...@lists.launchpad.n
On 4 October 2015 at 18:26, Bruno Chareyre <bruno.chare...@3sr-grenoble.fr>
wrote:
> http://carver.cs.ua.edu/Papers/Journal/2015/SLR-Science_preprint.pdf
>
> http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.1001745
> http://software.ac.uk/so-exactly-what-so
ev
> More help : https://help.launchpad.net/ListHelp
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I must mention that Jan's note is closely linked, in my brain, to a
discussion I had with a developper of Plaxis, who suggested [1] as a
relevant link.
B
[1] https://software-carpentry.org/
On 22 September 2015 at 17:37, Bruno Chareyre <
bruno.chare...@3sr-grenoble.fr> wrote:
> Very in
Post to : yade-dev@lists.launchpad.net
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> More help : https://help.launchpad.net/ListHelp
>
>
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3
OpenBLAS is an alternative of BLAS, as such it is not strictly necessary, you
are right.
I guess the yade package could allow different variants, but it would be some
more maintainance work.
There are so many incompatible combinations when it come to variants of
Thank you for reporting but this actually not a bug related to yade since the
problem is between octave and openblas.
Bruno
** Changed in: yade
Status: New = Invalid
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On 30/07/15 02:49, Bruno Chareyre wrote:
It is not far really, this is a theoretical method without a step() :
InsertionSortCollider().__call__()
bodyPairs=O.interactions
with the only problem that for the moment it would hide virtual
interactions (hence doesn't work practicaly). Easy to fix
On 31/07/15 09:36, Václav Šmilauer wrote:
message:
add function has() to O.interactions to check if (id1,id2) exists
+ fix doc of O.interactions
You can also call it __contains__
(https://docs.python.org/2/reference/datamodel.html#object.__contains__),
and do things like if (0,1) in ...
in a specific Ig2, then CohesionMoment could be used I think.
Cheers
Bruno
*From:* Yade-dev
[yade-dev-bounces+jerome.duriez=ucalgary...@lists.launchpad.net] on
behalf of Bruno Chareyre [bruno.chare...@3sr-grenoble.fr]
*Sent
Chareyre [
bruno.chare...@3sr-grenoble.fr]
*Sent:* July 29, 2015 2:24 PM
*To:* yade-dev@lists.launchpad.net
*Subject:* Re: [Yade-dev] [Yade-users] [Question #269724]: What are
particular features of CpmMat model?
On 29/07/15 17:49, Jerome Duriez wrote:
* constructing by hand all
Hi Jérôme,
I don't see what you mean, sorry.
Setting unp=un is explicitely making current state the equilibrium state,
without the need of any additional trick, else please explain why you
think it is not enough.
Handling modified normals (second specific feature) is the job of Ig2
functor, not
in python script.
Bruno
[1] https://answers.launchpad.net/yade/+question/266828
https://answers.launchpad.net/yade/+question/266828, #4 especially
On 29 July 2015 at 03:51, Bruno Chareyre bruno.chare...@3sr-grenoble.fr
wrote:
Hi Jérôme,
I don't see what you mean, sorry.
Setting unp=un
Hi,
Is -1.11.1 really the postfix you defined in the cmake options? I have doubts
about that.
Also:
- which version of the sources do you compile?
- what is cmake output?
- what OS do you have?
I'm closing since I'm nearly sure it is not a bug (or, if it is, a won't fix
since we will not fix
Hi Jérôme,
First of all, this is work in progress (the weirdness of classnames
suggests that...) so we will probably not discuss it too much at this point.
Short answers, though:
I would have a first question on
Law2_ScGeom_CapillaryPhys_Capillarity1::intEnergy() / swInterface() /
Yes, I understand the idea on performance.
table[i][j]- is nearly as fast a p-.
It makes sense but it is pitty, it was quite a bit of work to implement
the cache thing everywhere wasn't it? :)
Anyway, it would be interesting to have timings again.
B
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@Vaclav
I removed this functor caching, since it does not seem to bring any benefit
performance-wise.
IIRC the change [1] gave a significant (clearly measurable) speedup.
Before the change it was like this:
if (noIGfuntor || noIPfunctor) assignIGfunctor();
if (!IGfunctor.go()) continue;
bla=Omega()
bla.engines?
Docstring: [...] accessed using O.engines
Do you see the problem? Do I really access the engines of bla as
O.engines?
For some reason the answer is actually yes, haha.
But I guess you will get the general idea.
B
I don't understand this assert either.
Just adding more questions:
-Can the same problem also appear in Ip2_FrictMat_CpmMat_FrictPhys?
-This one requires that mat1 is Frict and Mat2 is Cpm, how can it be always
true? [4]
The good fix would be to let materials be swapped, I don't believe it
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Bruno Chareyre
Associate Professor
ENSE
Hi Jerome,
It would be a good thing to have scripts generating data in trunk indeed.
d is a solution of the ODE integration, not an input variable, that is why
you don't find a logic in the increments.
uc is an input parameter OTOH. I don't remember in detail how its evolution
was defined by I
You are right. I agree with your solution.
However I suggest to make addF(id,(2,0,0),True) return error/warning
with explicit message (the function changed, please use that one, etc.)
instead of just standard python error. It will make transition easier
for those who use the current version.
Bruno
** Changed in: yade
Importance: Undecided = Medium
** Changed in: yade
Assignee: (unassigned) = Bruno Chareyre (bruno-chareyre)
** Changed in: yade
Status: New = Confirmed
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Public bug reported:
Most likely the reason for performance drop reported in [1]
dx in the voxel decomposition is minRad/discretization.
The problem is when a sphere of radius 1 is member of a clump which aabb has
the size 1000 (for instance).
Using the minimal discretization=1 gives a number
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