When I changed the parameter file to force it to use mzdata by setting spectrum, path type to mzdata.
I get the following error: # Commands for session FG037WQ0Z on Thu Jan 6 10:30:37 2011 # BEGIN COMMAND BLOCK ###### BEGIN Command Execution ###### [Thu Jan 6 10:30:37 2011] EXECUTING: run_in c:/Inetpub/wwwroot/ISB/ data/oetzitest2; c:\Inetpub\tpp-bin\tandem c:/Inetpub/wwwroot/ISB/data/ oetzitest2/otzi_14.mzdata.params OUTPUT: X! TANDEM 2009.10.01.1 (LabKey and ISB) Loading spectra . zlib data decompression returns error -3 Cause: possible corrupted file. command "c:\Inetpub\tpp-bin\tandem c:/Inetpub/wwwroot/ISB/data/ oetzitest2/otzi_14.mzdata.params" failed: Operation not permitted END OUTPUT RETURN CODE:256 ###### End Command Execution ###### # All finished at Thu Jan 6 10:30:37 2011 # END COMMAND BLOCK Is this because the mzdata version that we can output from our MassHunter software is newer than the tandem version included with TPP? We've been using the gpm tornado version to search these files just fine. Version information from one of our mzdata files: <mzData version="1.05" accessionNumber="psi-ms:100" xmlns:xsi="http:// www.w3.org/2001/XMLSchema-instance"> <cvLookup cvLabel="psi" fullName="The PSI Ontology" version="1.00" address="http://psidev.sourceforge.net/ontology"; /> Thank you for any ideas. On Jan 6, 9:56 am, Spencer <[email protected]> wrote: > Yes there is MS2 spectrum in the file. > > On Jan 5, 4:22 pm, Joe Slagel <[email protected]> wrote: > > > Do you have MS2 spectrum in the file? Please see > > >http://www.mail-archive.com/[email protected]/msg0274... > > > On Wed, Jan 5, 2011 at 3:07 PM, Spencer <[email protected]> wrote: > > > I have been trying to use the ability to perform an xtandem search in > > > TPP 4.4rev1. I initially had problems with it saying the file is > > > corrupt but after changing the extension it seemed to work but now I > > > get an error. The file was exported from an Agilent .d file, but I > > > know it works with the standalone install of X! Tandem. > > > > Does anyone have an idea what this error means? The output is below. > > > Thank you. > > > > # Commands for session FHLKKV7M3 on Wed Jan 5 15:46:00 2011 > > > # BEGIN COMMAND BLOCK > > > ###### BEGIN Command Execution ###### > > > [Wed Jan 5 15:46:00 2011] EXECUTING: run_in c:/Inetpub/wwwroot/ISB/ > > > data/oetzitest2; c:\Inetpub\tpp-bin\tandem c:/Inetpub/wwwroot/ISB/data/ > > > oetzitest2/otzi_14.tandem.params > > > OUTPUT: > > > > X! TANDEM 2009.10.01.1 (LabKey and ISB) > > > > Loading spectra . loaded. > > > No input spectra met the acceptance criteria. > > > > command "c:\Inetpub\tpp-bin\tandem c:/Inetpub/wwwroot/ISB/data/ > > > oetzitest2/otzi_14.tandem.params" failed: Operation not permitted > > > END OUTPUT > > > RETURN CODE:256 > > > ###### End Command Execution ###### > > > # All finished at Wed Jan 5 15:46:00 2011 > > > # END COMMAND BLOCK > > > > -- > > > You received this message because you are subscribed to the Google Groups > > > "spctools-discuss" group. > > > To post to this group, send email to [email protected]. > > > To unsubscribe from this group, send email to > > > [email protected]<spctools-discuss%[email protected]> > > > . > > > For more options, visit this group at > > >http://groups.google.com/group/spctools-discuss?hl=en. > > > -- > > Joe Slagel > > Institute for Systems Biology > > [email protected] > > (206) 732-1362 -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
