Yes, I was able to reproduce the ridiculous conversion time and bogus precursors as well. Nothing I
can really do about it though with the current API. Ironically the current API "works" but the new
one gives an error - I'll look into that later; there have been other cases where the new API gives
the correct precursor value while the current one doesn't.
As for MS2s following the MS1s, see the recent thread with Nathan Edwards.
-Matt
On 1/21/2011 5:27 AM, Valot Benoīt wrote:
Hi,
No, data are on a USB disk driver and file are saved on hard disk.
Furthermore, transfer are rapidly from 0 to 1.7 GB corresponding to
MS1 data, and slow for 1.7 to 2 GB data corresponding to MS2 data. I
have send you in private an url to download an wiff file to test
directly.
The second point that was special is that all MS1 spectra are firstly
write on the mzXML file from scan number 1 to 3000 and then all MS2
spectra from 3000 to 32000. In contrast, to have normally MS2 spectra
included in the MS1 spectra. Moreover, the MS2 scans seems not correct
or at least precursor value must be false, because i identified no
peptides qith this file in contrast to analysed an mgf file produced
by an ABSciex tools.
If you have idea to correct this.
Benoit
On 20 jan, 16:47, Matthew Chambers<[email protected]> wrote:
4 hours seems a bit long for a single file. Is it on a network drive? It could
be the output size as
well. Since that definitely sounds like profile data, you almost certainly want
to turn compression
on (-z option).
-Matt
On 1/20/2011 3:33 AM, Valot Beno t wrote:
Hello Nathan,
I'm finally find the dll from skyline installation. I'm transformed
one data file (wiff of 500Mo), but conversion take 4 hours. I'm just
indicated export on mzXML and --32. This is normal? The final mzXML
file is 2Go. Because I'm using from a long time the ReaDW tools for
Thermo Raw data, which take less than 10 min for final files of 1Go.
To indication, the transformation are rapidly from 1 to 3000 spectra,
then it take several hours from 3000 to 32000 spectra. I'm think that
transformation of MS1 data are very speedily, and MS2 spectra slower.
I can send you data.
Benoit Valot
--
You received this message because you are subscribed to the Google Groups
"spctools-discuss" group.
To post to this group, send email to [email protected].
To unsubscribe from this group, send email to
[email protected].
For more options, visit this group at
http://groups.google.com/group/spctools-discuss?hl=en.
