Thanks, Kristian. I will try. On Sat, Jan 29, 2011 at 2:36 AM, Kristian <[email protected]> wrote: > The easiest way to add contaminants is to find the ones you want from > your favorite source (IPI, UniProt, wherever) and manually copy them > into your database file. If you open your database in a text viewer, > you'll see it has a very simple format. Once you have your complete > database, you can use the Decoy Databases tool in the TPP to add > reverse sequence decoys (this is especially easy to do in Petunia). > When you create your appended database, be sure not to leave any blank > lines between entries, otherwise entries will get deleted when you > create your decoy database. > > On Jan 27, 8:36 pm, 钟传奇 <[email protected]> wrote: >> Hi guys, >> I want to implement a database search, but I do not know how to create >> a composite database containing forward and decoy sequences with >> contaminants and trypsin. I know a software named >> "DecoyDatabaseBuilder" that can create a composite database from a IPI >> database, but that how to include the contaminants and trypsin >> sequences into the composite database troubles me. >> Could anyone help me? >> Thanks. > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > >
-- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
