What was your exactly command-line and which version of msconvert did you use?
-Matt On 3/29/2011 3:07 AM, Cédric wrote:
Hi, I am using msconvert to transform my .raw file acquired on a LTQ Velos into mzXML file. I performed LC-MS measurements in positive/negative mode in a single run, therefore my files contain both ion trace (i.e., positive and negative). I am trying to extract from my .raw file the negative ion trace and convert it in mzXML (filter="polarity negative"). When I am doing that, msconvert ignore my filter (it wrote back “Ignoring wrapper:…”) and transform my raw data into mzXML file which contains the negative and positive ion trace. Does anybody know how to extract each ion trace separately? thanks a lot for your help, Cédric
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