Hi Eileen,

We're looking into it...

-Joe


On Thu, Sep 22, 2011 at 3:20 PM, Eileen Yue <[email protected]> wrote:

> Dear all:
> I just download the newer version. When I tried to convert my sequest
> search results into pepxml, I can not select the files. they showed "there
> are no files of requested type (tandam) in this directory" though I can see
> my files listed in the right folder side.
>
> Also when I tried analyzed my previous PEPXML files, they will show errors.
>
> Does anyone know how to fix this problem?
>
> Thank you
> Eileen
> ________________________________________
> From: [email protected] [[email protected]]
> On Behalf Of Joseph Slagel [[email protected]]
> Sent: Wednesday, September 21, 2011 4:50 PM
> To: [email protected]; [email protected]
> Subject: [spctools-discuss] Announcing TPP release: 4.5.0 "Rapture"
>
> Announcing the availability of Trans-Proteomic Pipeline (TPP) "Rapture"
> 4.5.0
>
> We are proud to offer a major update to the Trans-Proteomic Pipeline (TPP)
> software, release 4.5.0 (4.5 revision).  The software is available for
> Windows as well as Linux (and unofficially) through OSX source from all the
> usual locations (please see the section below, "Getting the software").
>  Most users are recommended to use the Windows installer, which installs and
> configures the TPP and other required software (such as a web server).  For
> advanced users who need to customize the TPP, or for those who run
> high-throughput experiments, you can download the source code.
>
> == Release Nodes ==
>
> * Release notes on the most important new features, changes, and known
> issues are available at:
>
> "
> http://tools.proteomecenter.org/wiki/index.php?title=TPP:4.5.0_Release_Notes
> "
>
>
> == Getting the TPP Software ==
>
> * Download the TPP version 4.5.0 native windows installer
> (TPP_Setup_v4_5_RAPTURE_rev_0.exe) from the Sashimi SourceForge project file
> release page:
>
>   "http://sourceforge.net/<http://goog_2056063534>
> http://sourceforge.net/projects/sashimi/files/Trans-Proteomic Pipeline
> (TPP)<
> http://sourceforge.net/projects/sashimi/files/Trans-Proteomic%20Pipeline%20%28TPP%29
> >"
>
> * Everyone is encouraged to read and contribute to our wiki, at
>  "http://tools.proteomecenter.org/wiki/";
>
> * For guides to installing and using our software, please see our wiki:
>  "http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP";
>
> * For downloading the source code, please go to the following link:
>  "http://sourceforge.net/projects/sashimi/files/"; and find the 4.5.0
> source code .zip package;
> or, check out the code directly from svn:
>   "svn co
> http://sashimi.svn.sourceforge.net/svnroot/sashimi/tags/release_4-5-0<
> http://sashimi.svn.sourceforge.net/svnroot/sashimi/tags/release_4-4-0>"
>
>  For building from source, please refer to the readme file in TPP/src as
> well as the wiki.
>
>
> The TPP Team: Luis, David, Mike, Joe, Brian, and Natalie, plus all other
> developers who contributed to this release from the ISB.  Thanks to
> developers and users from the TPP's user community who provided feedback and
> code contributions.
>
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