I was able to fix this bug with: #include <stdint.h> in the extern/xtandem/src/saxhandler.h file.
On Oct 4, 4:47 pm, Ping <[email protected]> wrote: > Problem solved. With Jimmy's help, I put #include <stdlib.h> > to the head of Parsers/mzParser/mzParser.h and it solved the problem. > > Also there are some minor errors when I compiled the code. All > happens > when the functions require return value, but the code does not assign > one. > I just manually assigned a required "temp" value to fix it. It is not > a good way, > but it let me pass the compile error. Here is the list of those files > > translateDNA2AA-FASTA.cpp: char* temp = fgets(szBuf, SIZE_DESCR, > fpIn); > calculate_pi.cpp: int temp= system(szTmp); > saxmzmlhandler.cpp: size_t temp= fread(buffer,1,200,f); > saxmzxmlhandler.cpp: size_t temp= fread(buffer,1,200,f); > > Thanks, > > Ping > On Oct 4, 11:37 am, Ping <[email protected]> wrote: > > > > > > > > > No I tired to on ubuntu 10.4 using installer_linux > > > The error message I got is after I run > > > sh ./install-prerequisites-ubuntu-9_04.sh > > > cd ../src/ > > make > > > Thanks, > > > Ping > > > On Oct 3, 4:34 pm, Joseph Slagel <[email protected]> > > wrote: > > > > Are you trying to install using the window's installer, or build it? and > > > if > > > so on what platform? > > > > -Joe > > > > On Mon, Oct 3, 2011 at 4:24 PM, Ping <[email protected]> wrote: > > > > Thanks for the new version. > > > > > While I install the system, I got following errors: > > > > > In file included from Parsers/mzParser/saxhandler.cpp:133: > > > > Parsers/mzParser/mzParser.h:3538: error: ‘uint32_t’ has not been > > > > declared > > > > Parsers/mzParser/mzParser.h:3539: error: ‘uint64_t’ does not name a > > > > type > > > > Parsers/mzParser/mzParser.h:3617: error: ‘uint32_t’ has not been > > > > declared > > > > Parsers/mzParser/mzParser.h:3618: error: ‘uint64_t’ does not name a > > > > type > > > > > Did I do something wrong? > > > > > Thanks, > > > > > Ping > > > > > On Sep 21, 4:50 pm, Joseph Slagel <[email protected]> > > > > wrote: > > > > > Announcing the availability of Trans-Proteomic Pipeline (TPP) > > > > > "Rapture" > > > > 4.5. > > > > > 0 > > > > > > We are proud to offer a major update to the Trans-Proteomic Pipeline > > > > (TPP) > > > > > software, release 4.5.0 (4.5 revision). The software is available for > > > > > Windows as well as Linux (and unofficially) through OSX source from > > > > > all > > > > the > > > > > usual locations (please see the section below, "Getting the > > > > > software"). > > > > > Most users are recommended to use the Windows installer, which > > > > > installs > > > > and > > > > > configures the TPP and other required software (such as a web server). > > > > For > > > > > advanced users who need to customize the TPP, or for those who run > > > > > high-throughput experiments, you can download the source code. > > > > > > == Release Nodes == > > > > > > * Release notes on the most important new features, changes, and known > > > > > issues are available at: > > > > > > "http://tools.proteomecenter.org/wiki/index.php?title=TPP:4.5.0_Releas. > > > > .. > > > > > " > > > > > > == Getting the TPP Software == > > > > > > * Download the TPP version 4.5.0 native windows installer > > > > > (TPP_Setup_v4_5_RAPTURE_rev_0.exe) from the Sashimi SourceForge > > > > > project > > > > file > > > > > release page: > > > > > > "http://sourceforge.net/ > > > > > <http://goog_2056063534> > > > >http://sourceforge.net/projects/sashimi/files/Trans-Proteomic > > > > > Pipeline (TPP)" > > > > > > * Everyone is encouraged to read and contribute to our wiki, at > > > > > "http://tools.proteomecenter.org/wiki/"; > > > > > > * For guides to installing and using our software, please see our > > > > > wiki: > > > > > "http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP"; > > > > > > * For downloading the source code, please go to the following link: > > > > > "http://sourceforge.net/projects/sashimi/files/"; and find the 4.5.0 > > > > source > > > > > code .zip package; > > > > > or, check out the code directly from svn: > > > > > "svn cohttp:// > > > > sashimi.svn.sourceforge.net/svnroot/sashimi/tags/release_4-5-0< > > > >http://sashimi.svn.sourceforge.net/svnroot/sashimi/tags/release_4-4-0> > > > > > " > > > > > > For building from source, please refer to the readme file in > > > > > TPP/src as > > > > > well as the wiki. > > > > > > The TPP Team: Luis, David, Mike, Joe, Brian, and Natalie, plus all > > > > > other > > > > > developers who contributed to this release from the ISB. Thanks to > > > > > developers and users from the TPP's user community who provided > > > > > feedback > > > > and > > > > > code contributions. > > > > > -- > > > > You received this message because you are subscribed to the Google > > > > Groups > > > > "spctools-discuss" group. > > > > To post to this group, send email to [email protected]. > > > > To unsubscribe from this group, send email to > > > > [email protected]. > > > > For more options, visit this group at > > > >http://groups.google.com/group/spctools-discuss?hl=en. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
