Hi, I want to ask whether this new version can be directly installed not uninstalling the old version.
On Sat, Nov 5, 2011 at 1:00 AM, naturofix <[email protected]> wrote: > I have the exactly the same problem, and did what you suggested. > found that adding #include <stdint.h> to Parsers/mzParser/mzParser.h > > resolved some of the problem > > I don't know how to implement assigning a 'temp' value, could you be > more specific about this. > > I get the following errors > > Parsers/mzParser/saxmzxmlhandler.cpp: In member function ‘f_off > SAXMzxmlHandler::readIndexOffset()’: > Parsers/mzParser/saxmzxmlhandler.cpp:550: error: ignoring return value > of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with > attribute warn_unused_result > make: *** [/usr/local/src/trans_proteomic_pipeline/src/../build/Ubuntu- > x86_64/saxmzxmlhandler.o] Error 1 > > > On Oct 4, 10:47 pm, Ping <[email protected]> wrote: >> Problem solved. With Jimmy's help, I put #include <stdlib.h> >> to the head of Parsers/mzParser/mzParser.h and it solved the problem. >> >> Also there are some minor errors when I compiled the code. All >> happens >> when the functions require return value, but the code does not assign >> one. >> I just manually assigned a required "temp" value to fix it. It is not >> a good way, >> but it let me pass the compile error. Here is the list of those files >> >> translateDNA2AA-FASTA.cpp: char* temp = fgets(szBuf, SIZE_DESCR, >> fpIn); >> calculate_pi.cpp: int temp= system(szTmp); >> saxmzmlhandler.cpp: size_t temp= fread(buffer,1,200,f); >> saxmzxmlhandler.cpp: size_t temp= fread(buffer,1,200,f); >> >> Thanks, >> >> Ping >> On Oct 4, 11:37 am, Ping <[email protected]> wrote: >> >> > No I tired to on ubuntu 10.4 using installer_linux >> >> > The error message I got is after I run >> >> > sh ./install-prerequisites-ubuntu-9_04.sh >> >> > cd ../src/ >> > make >> >> > Thanks, >> >> > Ping >> >> > On Oct 3, 4:34 pm, Joseph Slagel <[email protected]> >> > wrote: >> >> > > Are you trying to install using the window's installer, or build it? >> > > and if >> > > so on what platform? >> >> > > -Joe >> >> > > On Mon, Oct 3, 2011 at 4:24 PM, Ping <[email protected]> wrote: >> > > > Thanks for the new version. >> >> > > > While I install the system, I got following errors: >> >> > > > In file included from Parsers/mzParser/saxhandler.cpp:133: >> > > > Parsers/mzParser/mzParser.h:3538: error: ‘uint32_t’ has not been >> > > > declared >> > > > Parsers/mzParser/mzParser.h:3539: error: ‘uint64_t’ does not name a >> > > > type >> > > > Parsers/mzParser/mzParser.h:3617: error: ‘uint32_t’ has not been >> > > > declared >> > > > Parsers/mzParser/mzParser.h:3618: error: ‘uint64_t’ does not name a >> > > > type >> >> > > > Did I do something wrong? >> >> > > > Thanks, >> >> > > > Ping >> >> > > > On Sep 21, 4:50 pm, Joseph Slagel <[email protected]> >> > > > wrote: >> > > > > Announcing the availability of Trans-Proteomic Pipeline (TPP) >> > > > > "Rapture" >> > > > 4.5. >> > > > > 0 >> >> > > > > We are proud to offer a major update to the Trans-Proteomic Pipeline >> > > > (TPP) >> > > > > software, release 4.5.0 (4.5 revision). The software is available >> > > > > for >> > > > > Windows as well as Linux (and unofficially) through OSX source from >> > > > > all >> > > > the >> > > > > usual locations (please see the section below, "Getting the >> > > > > software"). >> > > > > Most users are recommended to use the Windows installer, which >> > > > > installs >> > > > and >> > > > > configures the TPP and other required software (such as a web >> > > > > server). >> > > > For >> > > > > advanced users who need to customize the TPP, or for those who run >> > > > > high-throughput experiments, you can download the source code. >> >> > > > > == Release Nodes == >> >> > > > > * Release notes on the most important new features, changes, and >> > > > > known >> > > > > issues are available at: >> >> > > > > "http://tools.proteomecenter.org/wiki/index.php?title=TPP:4.5.0_Releas. >> > > > .. >> > > > > " >> >> > > > > == Getting the TPP Software == >> >> > > > > * Download the TPP version 4.5.0 native windows installer >> > > > > (TPP_Setup_v4_5_RAPTURE_rev_0.exe) from the Sashimi SourceForge >> > > > > project >> > > > file >> > > > > release page: >> >> > > > > "http://sourceforge.net/ >> > > > > <http://goog_2056063534> >> > > >http://sourceforge.net/projects/sashimi/files/Trans-Proteomic >> > > > > Pipeline (TPP)" >> >> > > > > * Everyone is encouraged to read and contribute to our wiki, at >> > > > > "http://tools.proteomecenter.org/wiki/"; >> >> > > > > * For guides to installing and using our software, please see our >> > > > > wiki: >> > > > > "http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP"; >> >> > > > > * For downloading the source code, please go to the following link: >> > > > > "http://sourceforge.net/projects/sashimi/files/"; and find the 4.5.0 >> > > > source >> > > > > code .zip package; >> > > > > or, check out the code directly from svn: >> > > > > "svn cohttp:// >> > > > sashimi.svn.sourceforge.net/svnroot/sashimi/tags/release_4-5-0< >> > > >http://sashimi.svn.sourceforge.net/svnroot/sashimi/tags/release_4-4-0> >> > > > > " >> >> > > > > For building from source, please refer to the readme file in >> > > > > TPP/src as >> > > > > well as the wiki. >> >> > > > > The TPP Team: Luis, David, Mike, Joe, Brian, and Natalie, plus all >> > > > > other >> > > > > developers who contributed to this release from the ISB. Thanks to >> > > > > developers and users from the TPP's user community who provided >> > > > > feedback >> > > > and >> > > > > code contributions. >> >> > > > -- >> > > > You received this message because you are subscribed to the Google >> > > > Groups >> > > > "spctools-discuss" group. >> > > > To post to this group, send email to [email protected]. >> > > > To unsubscribe from this group, send email to >> > > > [email protected]. >> > > > For more options, visit this group at >> > > >http://groups.google.com/group/spctools-discuss?hl=en. > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
