Hello Chris,
>From the "timeout" error screenshot, it seems that you are using the IIS
server.  The TPP does not support this web server; instead we recommend that
you install and run the Apache web server -- which is bundled and installed
with the TPP (provided you check the default boxes in the install wizard).

Hope this helps,
--Luis


On Fri, Oct 14, 2011 at 4:04 PM, Chris L <[email protected]> wrote:

> Dear all,
>
> I am experimenting with the TPP demo 2009 (http://
> tools.proteomecenter.org/wiki/index.php?title=TPP_Demo2009) and
> encountered two problems.
>
> First, for step 6: Validation of Peptide-Spectrum assignments with
> PeptideProphet,  I can never get past the Run XInteract step. My
> command does not finish running even after over a day! (screen:
> http://flic.kr/p/avNB4R)
>
> Second, when I am trying step 7: Visualize LC-MS/MS data using Pep3D.
> My browser tab shows "Connecting..." and a blank page that does not
> load and eventually turns into a CGI error page (screen:
> http://flic.kr/p/avNAXk)
>
> Any suggestion appreciated. Thank you.
>
> Regards,
> Chris
>
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