Thanks Brian, no I haven't tried mzXML. I'll try that today Cheers
Brett On Thursday, January 10, 2013 4:34:04 PM UTC-8, Brian Hampton wrote: > > Last I checked Tandem doesn't support mzML. I have done Tandem searches > using input files converted from RAW to the mzML format and it works, but > the resulting output files are not as functional as those from doing the > search with mzXML formated files. I forget exactly what is different in > the results, might be retention times or scan numbers are whacked... I'm > using TPP v4.6.1 > > Have you tried converting to mzXML for your Tandem searches? > > Brian > > > On Thu, Jan 10, 2013 at 1:14 PM, Brett Phinney > <[email protected]<javascript:> > > wrote: > >> I'm actually getting this exact same error when I try to search my data. >> I converted my raw files to mzML in the TPP and then went to the search >> step. That's when I get this error. >> >> Strangely if I copy the command the TPP is trying to execute and paste it >> into a command window it executes fine. >> >> Here is the exact error i'm getting >> >> *EXECUTING: run_in c:/Inetpub/wwwroot/ISB/data/riceqe1; >> c:\Inetpub\tpp-bin\tandem >> c:/Inetpub/wwwroot/ISB/data/riceqe1/qe11162012_26ru9.tandem.params * >> >> The system cannot find message text for message number 0x2331 in the message >> file for Application. >> >> *Command FAILED* >> RETURN CODE:256 >> >> Cheers >> >> Brett >> >> >> >> On Thursday, October 13, 2011 12:16:58 PM UTC-7, Luis wrote: >>> >>> Hello Bo, >>> The answer may be the same as the one in this thread: >>> http://bit.ly/ogXwK0 >>> >>> In short, we now only support using msconvert to do file conversions to >>> mzML (and mzXML). You are of course welcome to download the now >>> unsupported mzWiff converter from our download area, as it is no longer >>> included in the TPP package. >>> >>> Cheers, >>> --Luis >>> >>> >>> On Wed, Oct 12, 2011 at 6:18 AM, Bo Ek <[email protected]> wrote: >>> >>>> Hi, >>>> >>>> I'm having files from an early version of Agilent ESI-tof instrument >>>> (single ms) which generates .wiff files. These files are handled with >>>> the Analyst *QS* program (NB not the "ordinary" Analyst). When using >>>> TPP >>>> for conversion to mzXML I get the following error message: >>>> >>>> " c:\Inetpub\tpp-bin\mzWiff -v --mzXML -c1 -I"+" -T"" -D"TOF" >>>> --AnalystQS c:/Inetpub/wwwroot/ISB/data/**fil1-bsa_5uL.wiff >>>> >>>> The system cannot find message text for message number 0x2331 in the >>>> message file for Application. >>>> >>>> Command FAILED " >>>> >>>> What does this mean? >>>> >>>> Regards, >>>> Bo >>>> >>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "spctools-discuss" group. >>>> To post to this group, send email to spctools...@googlegroups.**com. >>>> To unsubscribe from this group, send email to spctools-discu...@** >>>> googlegroups.com. >>>> For more options, visit this group at http://groups.google.com/** >>>> group/spctools-discuss?hl=en<http://groups.google.com/group/spctools-discuss?hl=en> >>>> . >>>> >>>> >>> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To view this discussion on the web visit >> https://groups.google.com/d/msg/spctools-discuss/-/tRJTI8zegPYJ. >> To post to this group, send email to >> [email protected]<javascript:> >> . >> To unsubscribe from this group, send email to >> [email protected] <javascript:>. >> For more options, visit this group at >> http://groups.google.com/group/spctools-discuss?hl=en. >> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To view this discussion on the web visit https://groups.google.com/d/msg/spctools-discuss/-/tet7pBrBDqAJ. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
