Well, I could be wrong, but that space in the directory name is probably the culprit. I would rename the directory .../data/X! Tandem to something without a space in it. Just call it .../data/tandem instead.
Cheers, Brian Brian Hampton Protein Analysis Lab Center for Vascular and Inflammatory Diseases University of Maryland School of Medicine 800 West Baltimore Street Rm 307 Baltimore MD 21201 V: 410-706-8207 F: 410-706-8234 On Wed, Jul 17, 2013 at 5:24 PM, Kierstin Schmidt < [email protected]> wrote: > Hi! > I am a new user of TPP. I am trying to load my mzXML files to be searched > by X! Tandem, and I keep getting the following errors. If anyone has > advice, it would be greatly appreciated! > > Thanks! > > Kierstin > > > "c:/Inetpub/wwwroot/ISB/data/X! Tandem/MS138QE_sample2.tandem.pep.xml (*file > not found:* not created or deleted?) > > Followed by > > run_in c:/Inetpub/wwwroot/ISB/data/X!Tandem; c:\Inetpub\tpp-bin\tandem > c:/Inetpub/wwwroot/ISB/data/X! Tandem/MS138QE_sample2.tandem.params > > ------------------------------ > > X! TANDEM 2010.10.01.1 (LabKey, Insilicos and ISB) > > Loading spectra . > Failed to open: "c:/Inetpub/wwwroot/ISB/data/X!Tandem" > The input parameter file "c:/Inetpub/wwwroot/ISB/data/X!Tandem" could not be > located. > Check the file path name and try again. > > > An error was detected while loading the input parameters. > Please follow the advice above or contact a GPM administrator to help you. > command "c:\Inetpub\tpp-bin\tandem c:/Inetpub/wwwroot/ISB/data/X! > Tandem/MS138QE_sample2.tandem.params" failed: Unknown error > > *Command FAILED* > > > Command 2 *[Wed Jul 17 17:11:38 2013] * [ Show / Hide ] > > run_in c:/Inetpub/wwwroot/ISB/data/X!Tandem; c:\Inetpub\tpp-bin\Tandem2XML > c:/Inetpub/wwwroot/ISB/data/X! Tandem/MS138QE_sample2.tandem > c:/Inetpub/wwwroot/ISB/data/X! Tandem/MS138QE_sample2.tandem.pep.xml > > ------------------------------ > > c:\Inetpub\tpp-bin\Tandem2XML(TPP v4.5 RAPTURE rev 2, Build 201202031108 > (MinGW)) > Usage: c:\Inetpub\tpp-bin\Tandem2XML <input-file> [<output-file>] > > command "c:\Inetpub\tpp-bin\Tandem2XML c:/Inetpub/wwwroot/ISB/data/X! > Tandem/MS138QE_sample2.tandem c:/Inetpub/wwwroot/ISB/data/X! > Tandem/MS138QE_sample2.tandem.pep.xml" failed: Operation not permitted > > *Command FAILED* > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/groups/opt_out. > > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/groups/opt_out.
