Along these lines, everyone should simply avoid any symbols in directory and file names. There are some character symbols that are OK (I tell folks to use dash '-' and underscore '_' only besides letters and numbers) but it's best to avoid them all if you don't know which ones will work.
On Wed, Jul 17, 2013 at 3:28 PM, Brian Hampton <[email protected]> wrote: > Well, I could be wrong, but that space in the directory name is probably > the culprit. I would rename the directory .../data/X! Tandem to something > without a space in it. Just call it .../data/tandem instead. > > Cheers, > > Brian > > Brian Hampton > Protein Analysis Lab > Center for Vascular and Inflammatory Diseases > University of Maryland School of Medicine > 800 West Baltimore Street Rm 307 > Baltimore MD 21201 > V: 410-706-8207 > F: 410-706-8234 > > > On Wed, Jul 17, 2013 at 5:24 PM, Kierstin Schmidt < > [email protected]> wrote: > >> Hi! >> I am a new user of TPP. I am trying to load my mzXML files to be >> searched by X! Tandem, and I keep getting the following errors. If anyone >> has advice, it would be greatly appreciated! >> >> Thanks! >> >> Kierstin >> >> >> "c:/Inetpub/wwwroot/ISB/data/X! Tandem/MS138QE_sample2.tandem.pep.xml (*file >> not found:* not created or deleted?) >> >> Followed by >> >> run_in c:/Inetpub/wwwroot/ISB/data/X!Tandem; c:\Inetpub\tpp-bin\tandem >> c:/Inetpub/wwwroot/ISB/data/X! Tandem/MS138QE_sample2.tandem.params >> >> ------------------------------ >> >> X! TANDEM 2010.10.01.1 (LabKey, Insilicos and ISB) >> >> Loading spectra . >> Failed to open: "c:/Inetpub/wwwroot/ISB/data/X!Tandem" >> The input parameter file "c:/Inetpub/wwwroot/ISB/data/X!Tandem" could not be >> located. >> Check the file path name and try again. >> >> >> An error was detected while loading the input parameters. >> Please follow the advice above or contact a GPM administrator to help you. >> command "c:\Inetpub\tpp-bin\tandem c:/Inetpub/wwwroot/ISB/data/X! >> Tandem/MS138QE_sample2.tandem.params" failed: Unknown error >> >> *Command FAILED* >> >> >> Command 2 *[Wed Jul 17 17:11:38 2013] * [ Show / Hide ] >> >> run_in c:/Inetpub/wwwroot/ISB/data/X!Tandem; c:\Inetpub\tpp-bin\Tandem2XML >> c:/Inetpub/wwwroot/ISB/data/X! Tandem/MS138QE_sample2.tandem >> c:/Inetpub/wwwroot/ISB/data/X! Tandem/MS138QE_sample2.tandem.pep.xml >> >> ------------------------------ >> >> c:\Inetpub\tpp-bin\Tandem2XML(TPP v4.5 RAPTURE rev 2, Build 201202031108 >> (MinGW)) >> Usage: c:\Inetpub\tpp-bin\Tandem2XML <input-file> [<output-file>] >> >> command "c:\Inetpub\tpp-bin\Tandem2XML c:/Inetpub/wwwroot/ISB/data/X! >> Tandem/MS138QE_sample2.tandem c:/Inetpub/wwwroot/ISB/data/X! >> Tandem/MS138QE_sample2.tandem.pep.xml" failed: Operation not permitted >> >> *Command FAILED* >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> To post to this group, send email to [email protected]. >> Visit this group at http://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/groups/opt_out. >> >> >> > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/groups/opt_out. > > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/groups/opt_out.
