My guess is it could be related to the spaces in you folder names. Can you try folder names without spaces?
Thanks, -David On Fri, Mar 20, 2015 at 9:35 AM, David Baxter <[email protected]> wrote: > Hello, > > I am trying to use TPP for the first time and have been unable to convert > .dat files from mascot into pepXML. I suspect that maybe I am not using > the right database file. > > I obtained the .dat files from the free mascot server and did my searches > using the NCBInr database restricted to zebrafish. I also downloaded the > nr database from ftp://ftp.ncbi.nih.gov/blast/db/FASTA/nr.gz and unziped > that file to use for Mascot2XML. > > The error message I receive when trying to convert is pasted below. If > anyone can tell me what I am doing wrong, I would appreciate it very much. > > Thanks > > > > *EXECUTING: cd c:/Inetpub/wwwroot/ISB/data/Baxter MS Data& > c:\Inetpub\tpp-bin\Mascot2XML c:/Inetpub/wwwroot/ISB/data/Baxter MS > Data/FTgTSnEEE.dat -Dc:/Inetpub/wwwroot/ISB/data/Baxter MS Data/nr > -Etrypsin -notgz * > > This application has requested the Runtime to terminate it in an unusual way. > Please contact the application's support team for more information. > > *Command FAILED* > RETURN CODE:65280 > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
