Thanks again for the response,

I actually saw this post and attempted that as a workaround when I first 
ran into problems.  Unfortunately, I have not been able to resolve a side 
by side configuration error that I get when I try to convert my Agilent .D 
files to mzML files in TPP (pasted below).

*EXECUTING: c:\Inetpub\tpp-bin\msconvert 
c:/Inetpub/wwwroot/ISB/data/BaxterMSData/DB081314/001-0401.D -v --mzML -o 
c:/Inetpub/wwwroot/ISB/data/BaxterMSData/DB081314 *

format: mzML 
    m/z: Compression-None, 64-bit
    intensity: Compression-None, 32-bit
    rt: Compression-None, 64-bit
ByteOrder_LittleEndian
 indexed="true"
outputPath: c:/Inetpub/wwwroot/ISB/data/BaxterMSData/DB081314
extension: .mzML
contactFilename: 

filters:
  
filenames:
  c:/Inetpub/wwwroot/ISB/data/BaxterMSData/DB081314\001-0401.D
  
processing file: c:/Inetpub/wwwroot/ISB/data/BaxterMSData/DB081314\001-0401.D
[CompassDataImpl::ctor] Retrieving the COM class factory for component with 
CLSID {012A4BEB-99EC-4A65-A4AF-7D09A20B5034} failed due to the following error: 
800736b1 The application has failed to start because its side-by-side 
configuration is incorrect. Please see the application event log or use the 
command-line sxstrace.exe tool for more detail. (Exception from HRESULT: 
0x800736B1).

*Command FAILED*
RETURN CODE:256



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