Please try the method described in this post: https://groups.google.com/d/msg/spctools-discuss/pDcOnkw7wBw/MMeo82XCpOMJ
Thanks! -David On Mon, Mar 23, 2015 at 3:02 PM, David Baxter <[email protected]> wrote: > Hello Again, > > I have encountered another problem while trying to run peptide prophet. > Mascot2xml runs successfully, although with some warning messages. The > file does look like it contains good peptide information, so it seems to > have run correctly. However, when I try to run this file with protein > prophet, it fails to complete. Any ideas on what may be causing the error? > > Pasted below are the logs for the mascot2xml and peptide prophet jobs. > > Thanks, > > David > > > > *EXECUTING: cd c:/Inetpub/wwwroot/ISB/data/BaxterMSData/DB081314& > c:\Inetpub\tpp-bin\Mascot2XML > c:/Inetpub/wwwroot/ISB/data/BaxterMSData/DB081314/202.dat > -Dc:/Inetpub/wwwroot/ISB/data/BaxterMSData/nr -pI -Etrypsin * > > filepath: c:/Inetpub/wwwroot/ISB/data/BaxterMSData/DB081314/, extn: 202 > A stored as 71.0371 > B stored as 114.535 > C stored as 103.009 > D stored as 115.027 > E stored as 129.043 > F stored as 147.068 > G stored as 57.0215 > H stored as 137.059 > I stored as 113.084 > J stored as 113.084 > K stored as 128.095 > L stored as 113.084 > M stored as 131.04 > N stored as 114.043 > O stored as 237.148 > P stored as 97.0528 > Q stored as 128.059 > R stored as 156.101 > S stored as 87.032 > T stored as 101.048 > U stored as 150.954 > V stored as 99.0684 > W stored as 186.079 > X stored as 111 > Y stored as 163.063 > Z stored as 128.551 > c stored as 17.0027 > n stored as 1.00783 > Unknown file type. No file loaded. > warning: cannot open "" for reading scan numbers.Warning: could not find > scan numbers of spectrum Cmpd2,MSn(218.5)5.8min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd62,MSn(238.7)35.3min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd195,MSn(244.3)52.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd5,MSn(258.2)18.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd10,MSn(259.2)19.2min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd9,MSn(261.1)19.1min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd137,MSn(276.2)45.8min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd188,MSn(288.4)51.8min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd192,MSn(288.4)51.9min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd27,MSn(300.5)26.8min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd26,MSn(301.7)26.4min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd31,MSn(302.6)27.2min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd32,MSn(303.7)27.5min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd203,MSn(316.4)53.5min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd8,MSn(326.2)18.9min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd11,MSn(337.3)20.4min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd12,MSn(356.5)20.5min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd19,MSn(361.9)25.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd39,MSn(368.8)29.5min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd196,MSn(381.6)52.7min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd142,MSn(387.2)46.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd16,MSn(388.2)25.1min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd3,MSn(388.2)8.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd21,MSn(396.6)25.7min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd15,MSn(398.2)24.5min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd194,MSn(399.2)52.3min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd7,MSn(402.3)18.7min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd24,MSn(404.6)26.2min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd80,MSn(404.8)38.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd78,MSn(405.5)38.4min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd163,MSn(406.1)48.8min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd141,MSn(406.2)46.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd55,MSn(406.7)32.9min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd58,MSn(410.5)33.8min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd46,MSn(412.8)30.5min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd47,MSn(412.9)30.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd60,MSn(415.1)34.8min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd1,MSn(420.3)5.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd50,MSn(421.8)31.0min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd45,MSn(422.3)30.4min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd204,MSn(424.3)53.5min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd25,MSn(427.9)26.4min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd49,MSn(428.7)31.0min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd22,MSn(432.7)26.0min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd44,MSn(434.8)30.2min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd51,MSn(435.9)31.1min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd197,MSn(437.1)52.8min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd28,MSn(437.9)26.9min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd48,MSn(440.7)30.7min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd206,MSn(447.2)54.3min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd208,MSn(447.9)55.0min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd38,MSn(451.8)29.0min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd52,MSn(454.4)31.1min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd4,MSn(455.1)17.4min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd14,MSn(462.3)21.9min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd199,MSn(466.5)52.9min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd164,MSn(471.0)48.9min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd143,MSn(471.2)46.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd162,MSn(471.5)48.8min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd146,MSn(472.7)47.0min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd36,MSn(476.8)28.4min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd202,MSn(478.4)53.3min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd180,MSn(481.1)51.1min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd23,MSn(483.3)26.2min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd20,MSn(487.7)25.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd30,MSn(501.2)27.1min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd69,MSn(501.8)37.3min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd6,MSn(515.6)18.7min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd17,MSn(523.2)25.5min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd43,MSn(524.5)30.1min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd86,MSn(526.8)39.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd33,MSn(528.5)27.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd64,MSn(531.8)35.5min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd106,MSn(532.0)42.3min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd89,MSn(539.3)39.7min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd71,MSn(541.3)37.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd18,MSn(542.3)25.5min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd37,MSn(542.6)28.9min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd40,MSn(543.4)29.8min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd205,MSn(547.1)54.1min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd56,MSn(548.4)33.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd41,MSn(557.0)29.9min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd68,MSn(559.8)37.3min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd83,MSn(571.2)39.4min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd115,MSn(580.1)43.4min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd135,MSn(580.8)45.7min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd54,MSn(581.4)32.1min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd126,MSn(581.2)44.3min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd124,MSn(582.1)44.3min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd97,MSn(584.2)41.1min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd77,MSn(588.1)38.4min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd79,MSn(588.7)38.5min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd66,MSn(588.9)36.4min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd34,MSn(589.3)28.3min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd53,MSn(589.6)31.7min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd35,MSn(589.8)28.3min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd57,MSn(596.6)33.7min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd133,MSn(599.5)45.4min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd131,MSn(599.7)45.3min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd67,MSn(603.0)36.7min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd120,MSn(604.9)43.7min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd75,MSn(607.3)38.3min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd122,MSn(614.4)43.8min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd59,MSn(615.2)33.9min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd151,MSn(623.8)47.7min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd109,MSn(624.4)42.5min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd159,MSn(628.5)48.5min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd119,MSn(630.3)43.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd198,MSn(640.5)52.8min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd158,MSn(644.7)48.4min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd173,MSn(659.7)50.3min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd178,MSn(672.4)51.0min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd172,MSn(672.9)50.3min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd13,MSn(673.3)20.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd174,MSn(691.0)50.5min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd98,MSn(692.8)41.3min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd113,MSn(734.4)43.2min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd110,MSn(737.3)42.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd111,MSn(737.9)42.8min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd72,MSn(737.9)37.7min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd91,MSn(738.2)40.1min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd42,MSn(742.4)30.0min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd100,MSn(743.8)41.5min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd90,MSn(747.4)40.0min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd85,MSn(749.2)39.4min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd93,MSn(750.2)40.2min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd94,MSn(750.9)40.3min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd101,MSn(756.0)41.5min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd107,MSn(756.1)42.4min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd112,MSn(761.3)43.1min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd127,MSn(761.5)44.7min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd84,MSn(761.6)39.4min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd125,MSn(762.1)44.3min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd136,MSn(762.1)45.7min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd128,MSn(762.2)44.9min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd134,MSn(762.6)45.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd88,MSn(770.3)39.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd87,MSn(771.5)39.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd102,MSn(775.8)42.1min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd103,MSn(778.4)42.1min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd104,MSn(778.7)42.2min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd65,MSn(778.6)35.7min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd105,MSn(779.6)42.2min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd123,MSn(783.8)44.2min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd184,MSn(790.7)51.4min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd96,MSn(791.4)41.0min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd182,MSn(791.4)51.2min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd145,MSn(792.2)46.7min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd73,MSn(792.7)37.7min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd144,MSn(793.0)46.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd74,MSn(793.3)37.9min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd190,MSn(795.4)51.8min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd177,MSn(795.8)50.9min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd168,MSn(799.7)49.9min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd156,MSn(800.0)48.3min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd63,MSn(800.4)35.4min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd185,MSn(800.9)51.5min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd95,MSn(807.5)40.9min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd81,MSn(815.4)38.7min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd82,MSn(816.3)38.7min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd70,MSn(816.8)37.5min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd61,MSn(823.4)35.2min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd149,MSn(832.1)47.2min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd148,MSn(835.2)47.2min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd153,MSn(835.2)47.9min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd165,MSn(835.8)49.1min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd150,MSn(837.4)47.5min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd154,MSn(844.6)48.1min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd152,MSn(844.7)47.7min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd147,MSn(845.1)47.1min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd160,MSn(845.9)48.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd175,MSn(846.2)50.7min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd166,MSn(846.6)49.1min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd157,MSn(846.9)48.3min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd114,MSn(850.5)43.3min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd116,MSn(869.8)43.5min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd140,MSn(870.3)46.3min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd179,MSn(870.4)51.1min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd138,MSn(870.9)45.9min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd29,MSn(874.4)27.0min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd193,MSn(887.1)52.0min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd186,MSn(890.6)51.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd139,MSn(895.7)46.1min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd130,MSn(899.1)45.3min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd132,MSn(900.2)45.4min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd200,MSn(904.6)53.1min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd117,MSn(906.7)43.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd118,MSn(907.8)43.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd129,MSn(912.8)45.1min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd207,MSn(915.5)54.9min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd108,MSn(916.9)42.5min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd201,MSn(916.9)53.1min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd121,MSn(920.8)43.8min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd187,MSn(927.4)51.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd183,MSn(929.8)51.3min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd191,MSn(931.5)51.9min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd181,MSn(933.7)51.2min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd161,MSn(973.2)48.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd169,MSn(989.4)50.2min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd176,MSn(989.4)50.8min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd170,MSn(989.9)50.2min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd155,MSn(1053.2)48.2min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd167,MSn(1053.4)49.6min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd171,MSn(1053.6)50.3min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd92,MSn(1105.9)40.1min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd189,MSn(1113.1)51.8min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd99,MSn(1114.7)41.4min > Set to 0000Warning: could not find scan numbers of spectrum > Cmpd76,MSn(1176.0)38.4min > Set to 0000 > trypsin : cut(KR) nocuts(P) sense(C) > prev_aa and next_aa have already been read from .dat file. > Replacing 1804 protein id with full ids by parsing through the database... > searching > c:/Inetpub/wwwroot/ISB/data/BaxterMSData/nr.....5%.....10%.....15%.....20%.....30%.....35%.....40%.....45%.....50%.....60%.....65%.....70%.....75%.....80%.....90%.....95%...done > 2. opening Mon_Mar_23_14-48-33_2015.spectrum2.00000.00000.3.out > 4. opening > Mon_Mar_23_14-48-33_2015.spectrum4.00000.00000.3.out > 5. opening > Mon_Mar_23_14-48-33_2015.spectrum5.00000.00000.3.out > 6. opening > Mon_Mar_23_14-48-33_2015.spectrum6.00000.00000.3.out > 10. opening > Mon_Mar_23_14-48-33_2015.spectrum10.00000.00000.3.out > 11. opening > Mon_Mar_23_14-48-33_2015.spectrum11.00000.00000.3.out > 12. opening > Mon_Mar_23_14-48-33_2015.spectrum12.00000.00000.3.out > 13. opening > Mon_Mar_23_14-48-33_2015.spectrum13.00000.00000.2.out > 14. opening > Mon_Mar_23_14-48-33_2015.spectrum14.00000.00000.3.out > 15. opening > Mon_Mar_23_14-48-33_2015.spectrum15.00000.00000.3.out > 16. opening > Mon_Mar_23_14-48-33_2015.spectrum16.00000.00000.3.out > 17. opening > Mon_Mar_23_14-48-33_2015.spectrum17.00000.00000.3.out > 18. opening > Mon_Mar_23_14-48-33_2015.spectrum18.00000.00000.3.out > 19. opening > Mon_Mar_23_14-48-33_2015.spectrum19.00000.00000.3.out > 20. opening > Mon_Mar_23_14-48-33_2015.spectrum20.00000.00000.3.out > 21. opening > Mon_Mar_23_14-48-33_2015.spectrum21.00000.00000.3.out > 22. opening > Mon_Mar_23_14-48-33_2015.spectrum22.00000.00000.3.out > 23. opening > Mon_Mar_23_14-48-33_2015.spectrum23.00000.00000.2.out > 24. opening > Mon_Mar_23_14-48-33_2015.spectrum24.00000.00000.2.out > 25. opening > Mon_Mar_23_14-48-33_2015.spectrum25.00000.00000.2.out > 26. opening > Mon_Mar_23_14-48-33_2015.spectrum26.00000.00000.2.out > 27. opening > Mon_Mar_23_14-48-33_2015.spectrum27.00000.00000.3.out > 28. opening > Mon_Mar_23_14-48-33_2015.spectrum28.00000.00000.3.out > 29. opening > Mon_Mar_23_14-48-33_2015.spectrum29.00000.00000.2.out > 30. opening > Mon_Mar_23_14-48-33_2015.spectrum30.00000.00000.3.out > 31. opening > Mon_Mar_23_14-48-33_2015.spectrum31.00000.00000.3.out > 32. opening > Mon_Mar_23_14-48-33_2015.spectrum32.00000.00000.3.out > 33. opening > Mon_Mar_23_14-48-33_2015.spectrum33.00000.00000.2.out > 34. opening > Mon_Mar_23_14-48-33_2015.spectrum34.00000.00000.3.out > 35. opening > Mon_Mar_23_14-48-33_2015.spectrum35.00000.00000.2.out > 36. opening > Mon_Mar_23_14-48-33_2015.spectrum36.00000.00000.3.out > 37. opening > Mon_Mar_23_14-48-33_2015.spectrum37.00000.00000.2.out > 38. opening > Mon_Mar_23_14-48-33_2015.spectrum38.00000.00000.3.out > 39. opening > Mon_Mar_23_14-48-33_2015.spectrum39.00000.00000.2.out > 40. opening > Mon_Mar_23_14-48-33_2015.spectrum40.00000.00000.2.out > 41. opening > Mon_Mar_23_14-48-33_2015.spectrum41.00000.00000.3.out > 42. opening > Mon_Mar_23_14-48-33_2015.spectrum42.00000.00000.3.out > 43. opening > Mon_Mar_23_14-48-33_2015.spectrum43.00000.00000.2.out > 44. opening > Mon_Mar_23_14-48-33_2015.spectrum44.00000.00000.2.out > 45. opening > Mon_Mar_23_14-48-33_2015.spectrum45.00000.00000.3.out > 46. opening > Mon_Mar_23_14-48-33_2015.spectrum46.00000.00000.3.out > 47. opening > Mon_Mar_23_14-48-33_2015.spectrum47.00000.00000.3.out > 48. opening > Mon_Mar_23_14-48-33_2015.spectrum48.00000.00000.2.out > 49. opening > Mon_Mar_23_14-48-33_2015.spectrum49.00000.00000.3.out > 50. opening > Mon_Mar_23_14-48-33_2015.spectrum50.00000.00000.3.out > 51. opening > Mon_Mar_23_14-48-33_2015.spectrum51.00000.00000.3.out > 52. opening > Mon_Mar_23_14-48-33_2015.spectrum52.00000.00000.2.out > 53. opening > Mon_Mar_23_14-48-33_2015.spectrum53.00000.00000.2.out > 54. opening > Mon_Mar_23_14-48-33_2015.spectrum54.00000.00000.3.out > 55. opening > Mon_Mar_23_14-48-33_2015.spectrum55.00000.00000.2.out > 56. opening > Mon_Mar_23_14-48-33_2015.spectrum56.00000.00000.2.out > 57. opening > Mon_Mar_23_14-48-33_2015.spectrum57.00000.00000.2.out > 58. opening > Mon_Mar_23_14-48-33_2015.spectrum58.00000.00000.3.out > 59. opening > Mon_Mar_23_14-48-33_2015.spectrum59.00000.00000.3.out > 60. opening > Mon_Mar_23_14-48-33_2015.spectrum60.00000.00000.3.out > 61. opening > Mon_Mar_23_14-48-33_2015.spectrum61.00000.00000.3.out > 62. opening > Mon_Mar_23_14-48-33_2015.spectrum62.00000.00000.3.out > 63. opening > Mon_Mar_23_14-48-33_2015.spectrum63.00000.00000.3.out > 64. opening > Mon_Mar_23_14-48-33_2015.spectrum64.00000.00000.2.out > 65. opening > Mon_Mar_23_14-48-33_2015.spectrum65.00000.00000.2.out > 66. opening > Mon_Mar_23_14-48-33_2015.spectrum66.00000.00000.3.out > 67. opening > Mon_Mar_23_14-48-33_2015.spectrum67.00000.00000.2.out > 68. opening > Mon_Mar_23_14-48-33_2015.spectrum68.00000.00000.3.out > 69. opening > Mon_Mar_23_14-48-33_2015.spectrum69.00000.00000.2.out > 70. opening > Mon_Mar_23_14-48-33_2015.spectrum70.00000.00000.2.out > 71. opening > Mon_Mar_23_14-48-33_2015.spectrum71.00000.00000.3.out > 72. opening > Mon_Mar_23_14-48-33_2015.spectrum72.00000.00000.2.out > 73. opening > Mon_Mar_23_14-48-33_2015.spectrum73.00000.00000.3.out > 74. opening > Mon_Mar_23_14-48-33_2015.spectrum74.00000.00000.3.out > 75. opening > Mon_Mar_23_14-48-33_2015.spectrum75.00000.00000.3.out > 76. opening > Mon_Mar_23_14-48-33_2015.spectrum76.00000.00000.3.out > 77. opening > Mon_Mar_23_14-48-33_2015.spectrum77.00000.00000.3.out > 78. opening > Mon_Mar_23_14-48-33_2015.spectrum78.00000.00000.2.out > 79. opening > Mon_Mar_23_14-48-33_2015.spectrum79.00000.00000.2.out > 80. opening > Mon_Mar_23_14-48-33_2015.spectrum80.00000.00000.2.out > 81. opening > Mon_Mar_23_14-48-33_2015.spectrum81.00000.00000.2.out > 82. opening > Mon_Mar_23_14-48-33_2015.spectrum82.00000.00000.2.out > 83. opening > Mon_Mar_23_14-48-33_2015.spectrum83.00000.00000.2.out > 84. opening > Mon_Mar_23_14-48-33_2015.spectrum84.00000.00000.3.out > 85. opening > Mon_Mar_23_14-48-33_2015.spectrum85.00000.00000.3.out > 86. opening > Mon_Mar_23_14-48-33_2015.spectrum86.00000.00000.2.out > 87. opening > Mon_Mar_23_14-48-33_2015.spectrum87.00000.00000.2.out > 88. opening > Mon_Mar_23_14-48-33_2015.spectrum88.00000.00000.3.out > 89. opening > Mon_Mar_23_14-48-33_2015.spectrum89.00000.00000.3.out > 90. opening > Mon_Mar_23_14-48-33_2015.spectrum90.00000.00000.2.out > 91. opening > Mon_Mar_23_14-48-33_2015.spectrum91.00000.00000.2.out > 92. opening > Mon_Mar_23_14-48-33_2015.spectrum92.00000.00000.3.out > 93. opening > Mon_Mar_23_14-48-33_2015.spectrum93.00000.00000.3.out > 94. opening > Mon_Mar_23_14-48-33_2015.spectrum94.00000.00000.2.out > 95. opening > Mon_Mar_23_14-48-33_2015.spectrum95.00000.00000.2.out > 96. opening > Mon_Mar_23_14-48-33_2015.spectrum96.00000.00000.2.out > 97. opening > Mon_Mar_23_14-48-33_2015.spectrum97.00000.00000.3.out > 98. opening > Mon_Mar_23_14-48-33_2015.spectrum98.00000.00000.3.out > 99. opening > Mon_Mar_23_14-48-33_2015.spectrum99.00000.00000.3.out > 100. opening > Mon_Mar_23_14-48-33_2015.spectrum100.00000.00000.3.out > 101. opening > Mon_Mar_23_14-48-33_2015.spectrum101.00000.00000.3.out > 102. opening > Mon_Mar_23_14-48-33_2015.spectrum102.00000.00000.3.out > 103. opening > Mon_Mar_23_14-48-33_2015.spectrum103.00000.00000.3.out > 104. opening > Mon_Mar_23_14-48-33_2015.spectrum104.00000.00000.3.out > 105. opening > Mon_Mar_23_14-48-33_2015.spectrum105.00000.00000.2.out > 106. opening > Mon_Mar_23_14-48-33_2015.spectrum106.00000.00000.2.out > 107. opening > Mon_Mar_23_14-48-33_2015.spectrum107.00000.00000.3.out > 108. opening > Mon_Mar_23_14-48-33_2015.spectrum108.00000.00000.2.out > 109. opening > Mon_Mar_23_14-48-33_2015.spectrum109.00000.00000.2.out > 110. opening > Mon_Mar_23_14-48-33_2015.spectrum110.00000.00000.2.out > 111. opening > Mon_Mar_23_14-48-33_2015.spectrum111.00000.00000.3.out > 112. opening > Mon_Mar_23_14-48-33_2015.spectrum112.00000.00000.2.out > 113. opening > Mon_Mar_23_14-48-33_2015.spectrum113.00000.00000.3.out > 114. opening > Mon_Mar_23_14-48-33_2015.spectrum114.00000.00000.2.out > 115. opening > Mon_Mar_23_14-48-33_2015.spectrum115.00000.00000.3.out > 116. opening > Mon_Mar_23_14-48-33_2015.spectrum116.00000.00000.2.out > 117. opening > Mon_Mar_23_14-48-33_2015.spectrum117.00000.00000.2.out > 118. opening > Mon_Mar_23_14-48-33_2015.spectrum118.00000.00000.3.out > 119. opening > Mon_Mar_23_14-48-33_2015.spectrum119.00000.00000.2.out > 120. opening > Mon_Mar_23_14-48-33_2015.spectrum120.00000.00000.2.out > 121. opening > Mon_Mar_23_14-48-33_2015.spectrum121.00000.00000.3.out > 122. opening > Mon_Mar_23_14-48-33_2015.spectrum122.00000.00000.3.out > 123. opening > Mon_Mar_23_14-48-33_2015.spectrum123.00000.00000.3.out > 124. opening > Mon_Mar_23_14-48-33_2015.spectrum124.00000.00000.1.out > 125. opening > Mon_Mar_23_14-48-33_2015.spectrum125.00000.00000.3.out > 126. opening > Mon_Mar_23_14-48-33_2015.spectrum126.00000.00000.3.out > 127. opening > Mon_Mar_23_14-48-33_2015.spectrum127.00000.00000.3.out > 128. opening > Mon_Mar_23_14-48-33_2015.spectrum128.00000.00000.3.out > 129. opening > Mon_Mar_23_14-48-33_2015.spectrum129.00000.00000.1.out > 130. opening > Mon_Mar_23_14-48-33_2015.spectrum130.00000.00000.2.out > 131. opening > Mon_Mar_23_14-48-33_2015.spectrum131.00000.00000.3.out > 132. opening > Mon_Mar_23_14-48-33_2015.spectrum132.00000.00000.3.out > 133. opening > Mon_Mar_23_14-48-33_2015.spectrum133.00000.00000.3.out > 134. opening > Mon_Mar_23_14-48-33_2015.spectrum134.00000.00000.3.out > 135. opening > Mon_Mar_23_14-48-33_2015.spectrum135.00000.00000.3.out > 136. opening > Mon_Mar_23_14-48-33_2015.spectrum136.00000.00000.1.out > 137. opening > Mon_Mar_23_14-48-33_2015.spectrum137.00000.00000.2.out > 138. opening > Mon_Mar_23_14-48-33_2015.spectrum138.00000.00000.1.out > 139. opening > Mon_Mar_23_14-48-33_2015.spectrum139.00000.00000.2.out > 140. opening > Mon_Mar_23_14-48-33_2015.spectrum140.00000.00000.2.out > 141. opening > Mon_Mar_23_14-48-33_2015.spectrum141.00000.00000.2.out > 142. opening > Mon_Mar_23_14-48-33_2015.spectrum142.00000.00000.2.out > 143. opening > Mon_Mar_23_14-48-33_2015.spectrum143.00000.00000.2.out > 144. opening > Mon_Mar_23_14-48-33_2015.spectrum144.00000.00000.3.out > 145. opening > Mon_Mar_23_14-48-33_2015.spectrum145.00000.00000.3.out > 146. opening > Mon_Mar_23_14-48-33_2015.spectrum146.00000.00000.2.out > 147. opening > Mon_Mar_23_14-48-33_2015.spectrum147.00000.00000.3.out > 148. opening > Mon_Mar_23_14-48-33_2015.spectrum148.00000.00000.2.out > 149. opening > Mon_Mar_23_14-48-33_2015.spectrum149.00000.00000.2.out > 150. opening > Mon_Mar_23_14-48-33_2015.spectrum150.00000.00000.2.out > 151. opening > Mon_Mar_23_14-48-33_2015.spectrum151.00000.00000.2.out > 152. opening > Mon_Mar_23_14-48-33_2015.spectrum152.00000.00000.2.out > 153. opening > Mon_Mar_23_14-48-33_2015.spectrum153.00000.00000.1.out > 154. opening > Mon_Mar_23_14-48-33_2015.spectrum154.00000.00000.3.out > 155. opening > Mon_Mar_23_14-48-33_2015.spectrum155.00000.00000.1.out > 156. opening > Mon_Mar_23_14-48-33_2015.spectrum156.00000.00000.3.out > 157. opening > Mon_Mar_23_14-48-33_2015.spectrum157.00000.00000.1.out > 158. opening > Mon_Mar_23_14-48-33_2015.spectrum158.00000.00000.2.out > 159. opening > Mon_Mar_23_14-48-33_2015.spectrum159.00000.00000.1.out > 160. opening > Mon_Mar_23_14-48-33_2015.spectrum160.00000.00000.3.out > 161. opening > Mon_Mar_23_14-48-33_2015.spectrum161.00000.00000.2.out > 162. opening > Mon_Mar_23_14-48-33_2015.spectrum162.00000.00000.3.out > 163. opening > Mon_Mar_23_14-48-33_2015.spectrum163.00000.00000.3.out > 164. opening > Mon_Mar_23_14-48-33_2015.spectrum164.00000.00000.1.out > 165. opening > Mon_Mar_23_14-48-33_2015.spectrum165.00000.00000.3.out > 166. opening > Mon_Mar_23_14-48-33_2015.spectrum166.00000.00000.2.out > 167. opening > Mon_Mar_23_14-48-33_2015.spectrum167.00000.00000.2.out > 168. opening > Mon_Mar_23_14-48-33_2015.spectrum168.00000.00000.1.out > 169. opening > Mon_Mar_23_14-48-33_2015.spectrum169.00000.00000.3.out > 170. opening > Mon_Mar_23_14-48-33_2015.spectrum170.00000.00000.3.out > 171. opening > Mon_Mar_23_14-48-33_2015.spectrum171.00000.00000.3.out > 172. opening > Mon_Mar_23_14-48-33_2015.spectrum172.00000.00000.3.out > 173. opening > Mon_Mar_23_14-48-33_2015.spectrum173.00000.00000.1.out > 174. opening > Mon_Mar_23_14-48-33_2015.spectrum174.00000.00000.1.out > 175. opening > Mon_Mar_23_14-48-33_2015.spectrum175.00000.00000.2.out > 176. opening > Mon_Mar_23_14-48-33_2015.spectrum176.00000.00000.3.out > 177. opening > Mon_Mar_23_14-48-33_2015.spectrum177.00000.00000.1.out > 178. opening > Mon_Mar_23_14-48-33_2015.spectrum178.00000.00000.3.out > 179. opening > Mon_Mar_23_14-48-33_2015.spectrum179.00000.00000.3.out > 180. opening > Mon_Mar_23_14-48-33_2015.spectrum180.00000.00000.1.out > 181. opening > Mon_Mar_23_14-48-33_2015.spectrum181.00000.00000.2.out > 182. opening > Mon_Mar_23_14-48-33_2015.spectrum182.00000.00000.3.out > 183. opening > Mon_Mar_23_14-48-33_2015.spectrum183.00000.00000.3.out > 184. opening > Mon_Mar_23_14-48-33_2015.spectrum184.00000.00000.2.out > 185. opening > Mon_Mar_23_14-48-33_2015.spectrum185.00000.00000.2.out > 186. opening > Mon_Mar_23_14-48-33_2015.spectrum186.00000.00000.1.out > 187. opening > Mon_Mar_23_14-48-33_2015.spectrum187.00000.00000.2.out > 188. opening > Mon_Mar_23_14-48-33_2015.spectrum188.00000.00000.3.out > 189. opening > Mon_Mar_23_14-48-33_2015.spectrum189.00000.00000.2.out > 190. opening > Mon_Mar_23_14-48-33_2015.spectrum190.00000.00000.3.out > 191. opening > Mon_Mar_23_14-48-33_2015.spectrum191.00000.00000.2.out > 192. opening > Mon_Mar_23_14-48-33_2015.spectrum192.00000.00000.3.out > 193. opening > Mon_Mar_23_14-48-33_2015.spectrum193.00000.00000.2.out > 194. opening > Mon_Mar_23_14-48-33_2015.spectrum194.00000.00000.3.out > 195. opening > Mon_Mar_23_14-48-33_2015.spectrum195.00000.00000.3.out > 196. opening > Mon_Mar_23_14-48-33_2015.spectrum196.00000.00000.3.out > 197. opening > Mon_Mar_23_14-48-33_2015.spectrum197.00000.00000.3.out > 198. opening > Mon_Mar_23_14-48-33_2015.spectrum198.00000.00000.1.out > 199. opening > Mon_Mar_23_14-48-33_2015.spectrum199.00000.00000.1.out > 200. opening > Mon_Mar_23_14-48-33_2015.spectrum200.00000.00000.3.out > 201. opening > Mon_Mar_23_14-48-33_2015.spectrum201.00000.00000.1.out > 202. opening > Mon_Mar_23_14-48-33_2015.spectrum202.00000.00000.3.out > 203. opening > Mon_Mar_23_14-48-33_2015.spectrum203.00000.00000.3.out > 204. opening > Mon_Mar_23_14-48-33_2015.spectrum204.00000.00000.3.out > 205. opening > Mon_Mar_23_14-48-33_2015.spectrum205.00000.00000.1.out > 206. opening > Mon_Mar_23_14-48-33_2015.spectrum206.00000.00000.3.out > 207. opening > Mon_Mar_23_14-48-33_2015.spectrum207.00000.00000.2.out > 208. opening > Mon_Mar_23_14-48-33_2015.spectrum208.00000.00000.3.out > Unknown file type. No file loaded. > warning: cannot open "" for reading MS instrument info. > > *Command Successful* > RETURN CODE:0 > > > *EXECUTING: cd c:/Inetpub/wwwroot/ISB/data/BaxterMSData& > c:\Inetpub\tpp-bin\xinteract -Ninteract.pep.xml -p0.05 -l7 -PPM -O > 202.pep.xml * > > c:\Inetpub\tpp-bin\xinteract (TPP v4.8.0 PHILAE, Build 201411201551-6764 > (mingw-i686)) > PPM mode in Accurate Mass Model ... > > running: "C:/Inetpub/tpp-bin/InteractParser "interact.pep.xml" "202.pep.xml" > -L"7"" > file 1: 202.pep.xml > Unknown file type. No file loaded.WARNING: cannot open data file > c:/Inetpub/wwwroot/ISB/data/BaxterMSData/202.(null) in msms_run_summary tag > ...Unknown file type. No file loaded.WARNING: cannot CORRECT data file > c:/Inetpub/wwwroot/ISB/data/BaxterMSData/202.(null) in msms_run_summary tag > ... > processed altogether 203 results > INFO: Results written to file: > c:/Inetpub/wwwroot/ISB/data/BaxterMSData/interact.pep.xml > command completed in 0 sec > > running: "C:/Inetpub/tpp-bin/DatabaseParser "interact.pep.xml"" > command completed in 0 sec > > running: "C:/Inetpub/tpp-bin/RefreshParser "interact.pep.xml" > "c:/Inetpub/wwwroot/ISB/data/BaxterMSData/zebrafish.1.protein.faa"" > - Searching the tree... > - Linking duplicate entries... - Printing results... > > - Building Commentz-Walter keyword tree...command completed in 4 sec > > running: "C:/Inetpub/tpp-bin/PeptideProphetParser "interact.pep.xml" > MINPROB=0.05 PPM" > using PPM mass difference > (MASCOT) > results for charge 1: 19 id tot and 0 adj scores > results for charge 2: 75 id tot and 13 adj scores > results for charge 3: 109 id tot and 10 adj scores > results for charge 4: 0 id tot and 0 adj scores > results for charge 5: 0 id tot and 0 adj scores > results for charge 6: 0 id tot and 0 adj scores > results for charge 7: 0 id tot and 0 adj scores > init with MASCOT trypsin > MS Instrument info: Manufacturer: UNKNOWN, Model: UNKNOWN, Ionization: > UNKNOWN, Analyzer: UNKNOWN, Detector: UNKNOWN > > PeptideProphet (TPP v4.8.0 PHILAE, Build 201411201551-6764 (mingw-i686)) > AKeller@ISB > read in 19 1+, 75 2+, 109 3+, 0 4+, 0 5+, 0 6+, and 0 7+ spectra. > Initialising statistical models ... > Iterations: .........10.........20.. > model complete after 23 iterations > command completed in 0 sec > > running: "C:/Inetpub/tpp-bin/ProphetModels.pl -i interact.pep.xml" > Analyzing interact.pep.xml ... > Parsing search results "c:/Inetpub/wwwroot/ISB/data/BaxterMSData/202 > (MASCOT)"... > => Found 0 hits. (0 decoys, 0 excluded) > => Total so far: 0 hits. (0 decoys, 0 excluded) > The system cannot find the path specified. > command completed in 1 sec > > running: "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I > c:/Inetpub/wwwroot/ISB/data/BaxterMSData/interact.pep.xml" > > command "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I > c:/Inetpub/wwwroot/ISB/data/BaxterMSData/interact.pep.xml" failed: Unknown > error > > command "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I > c:/Inetpub/wwwroot/ISB/data/BaxterMSData/interact.pep.xml" exited with > non-zero exit code: 255 > QUIT - the job is incomplete > > *Command FAILED* > RETURN CODE:65280 > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
