Taking the spaces out fixed the problem. Thanks so much for the tip. On Friday, March 20, 2015 at 5:13:49 PM UTC-5, David Shteynberg wrote: > > My guess is it could be related to the spaces in you folder names. Can > you try folder names without spaces? > > Thanks, > -David > > On Fri, Mar 20, 2015 at 9:35 AM, David Baxter <[email protected] > <javascript:>> wrote: > >> Hello, >> >> I am trying to use TPP for the first time and have been unable to convert >> .dat files from mascot into pepXML. I suspect that maybe I am not using >> the right database file. >> >> I obtained the .dat files from the free mascot server and did my searches >> using the NCBInr database restricted to zebrafish. I also downloaded the >> nr database from ftp://ftp.ncbi.nih.gov/blast/db/FASTA/nr.gz and unziped >> that file to use for Mascot2XML. >> >> The error message I receive when trying to convert is pasted below. If >> anyone can tell me what I am doing wrong, I would appreciate it very much. >> >> Thanks >> >> >> >> *EXECUTING: cd c:/Inetpub/wwwroot/ISB/data/Baxter MS Data& >> c:\Inetpub\tpp-bin\Mascot2XML c:/Inetpub/wwwroot/ISB/data/Baxter MS >> Data/FTgTSnEEE.dat -Dc:/Inetpub/wwwroot/ISB/data/Baxter MS Data/nr >> -Etrypsin -notgz * >> >> This application has requested the Runtime to terminate it in an unusual way. >> Please contact the application's support team for more information. >> >> *Command FAILED* >> RETURN CODE:65280 >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To post to this group, send email to [email protected] >> <javascript:>. >> Visit this group at http://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > >
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