Hello Again,
I have encountered another problem while trying to run peptide prophet.
Mascot2xml runs successfully, although with some warning messages. The
file does look like it contains good peptide information, so it seems to
have run correctly. However, when I try to run this file with protein
prophet, it fails to complete. Any ideas on what may be causing the error?
Pasted below are the logs for the mascot2xml and peptide prophet jobs.
Thanks,
David
*EXECUTING: cd c:/Inetpub/wwwroot/ISB/data/BaxterMSData/DB081314&
c:\Inetpub\tpp-bin\Mascot2XML
c:/Inetpub/wwwroot/ISB/data/BaxterMSData/DB081314/202.dat
-Dc:/Inetpub/wwwroot/ISB/data/BaxterMSData/nr -pI -Etrypsin *
filepath: c:/Inetpub/wwwroot/ISB/data/BaxterMSData/DB081314/, extn: 202
A stored as 71.0371
B stored as 114.535
C stored as 103.009
D stored as 115.027
E stored as 129.043
F stored as 147.068
G stored as 57.0215
H stored as 137.059
I stored as 113.084
J stored as 113.084
K stored as 128.095
L stored as 113.084
M stored as 131.04
N stored as 114.043
O stored as 237.148
P stored as 97.0528
Q stored as 128.059
R stored as 156.101
S stored as 87.032
T stored as 101.048
U stored as 150.954
V stored as 99.0684
W stored as 186.079
X stored as 111
Y stored as 163.063
Z stored as 128.551
c stored as 17.0027
n stored as 1.00783
Unknown file type. No file loaded.
warning: cannot open "" for reading scan numbers.Warning: could not find scan
numbers of spectrum Cmpd2,MSn(218.5)5.8min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd62,MSn(238.7)35.3min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd195,MSn(244.3)52.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd5,MSn(258.2)18.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd10,MSn(259.2)19.2min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd9,MSn(261.1)19.1min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd137,MSn(276.2)45.8min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd188,MSn(288.4)51.8min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd192,MSn(288.4)51.9min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd27,MSn(300.5)26.8min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd26,MSn(301.7)26.4min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd31,MSn(302.6)27.2min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd32,MSn(303.7)27.5min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd203,MSn(316.4)53.5min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd8,MSn(326.2)18.9min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd11,MSn(337.3)20.4min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd12,MSn(356.5)20.5min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd19,MSn(361.9)25.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd39,MSn(368.8)29.5min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd196,MSn(381.6)52.7min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd142,MSn(387.2)46.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd16,MSn(388.2)25.1min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd3,MSn(388.2)8.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd21,MSn(396.6)25.7min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd15,MSn(398.2)24.5min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd194,MSn(399.2)52.3min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd7,MSn(402.3)18.7min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd24,MSn(404.6)26.2min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd80,MSn(404.8)38.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd78,MSn(405.5)38.4min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd163,MSn(406.1)48.8min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd141,MSn(406.2)46.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd55,MSn(406.7)32.9min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd58,MSn(410.5)33.8min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd46,MSn(412.8)30.5min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd47,MSn(412.9)30.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd60,MSn(415.1)34.8min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd1,MSn(420.3)5.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd50,MSn(421.8)31.0min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd45,MSn(422.3)30.4min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd204,MSn(424.3)53.5min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd25,MSn(427.9)26.4min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd49,MSn(428.7)31.0min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd22,MSn(432.7)26.0min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd44,MSn(434.8)30.2min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd51,MSn(435.9)31.1min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd197,MSn(437.1)52.8min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd28,MSn(437.9)26.9min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd48,MSn(440.7)30.7min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd206,MSn(447.2)54.3min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd208,MSn(447.9)55.0min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd38,MSn(451.8)29.0min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd52,MSn(454.4)31.1min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd4,MSn(455.1)17.4min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd14,MSn(462.3)21.9min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd199,MSn(466.5)52.9min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd164,MSn(471.0)48.9min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd143,MSn(471.2)46.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd162,MSn(471.5)48.8min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd146,MSn(472.7)47.0min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd36,MSn(476.8)28.4min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd202,MSn(478.4)53.3min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd180,MSn(481.1)51.1min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd23,MSn(483.3)26.2min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd20,MSn(487.7)25.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd30,MSn(501.2)27.1min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd69,MSn(501.8)37.3min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd6,MSn(515.6)18.7min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd17,MSn(523.2)25.5min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd43,MSn(524.5)30.1min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd86,MSn(526.8)39.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd33,MSn(528.5)27.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd64,MSn(531.8)35.5min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd106,MSn(532.0)42.3min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd89,MSn(539.3)39.7min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd71,MSn(541.3)37.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd18,MSn(542.3)25.5min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd37,MSn(542.6)28.9min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd40,MSn(543.4)29.8min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd205,MSn(547.1)54.1min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd56,MSn(548.4)33.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd41,MSn(557.0)29.9min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd68,MSn(559.8)37.3min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd83,MSn(571.2)39.4min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd115,MSn(580.1)43.4min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd135,MSn(580.8)45.7min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd54,MSn(581.4)32.1min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd126,MSn(581.2)44.3min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd124,MSn(582.1)44.3min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd97,MSn(584.2)41.1min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd77,MSn(588.1)38.4min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd79,MSn(588.7)38.5min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd66,MSn(588.9)36.4min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd34,MSn(589.3)28.3min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd53,MSn(589.6)31.7min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd35,MSn(589.8)28.3min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd57,MSn(596.6)33.7min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd133,MSn(599.5)45.4min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd131,MSn(599.7)45.3min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd67,MSn(603.0)36.7min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd120,MSn(604.9)43.7min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd75,MSn(607.3)38.3min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd122,MSn(614.4)43.8min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd59,MSn(615.2)33.9min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd151,MSn(623.8)47.7min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd109,MSn(624.4)42.5min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd159,MSn(628.5)48.5min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd119,MSn(630.3)43.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd198,MSn(640.5)52.8min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd158,MSn(644.7)48.4min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd173,MSn(659.7)50.3min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd178,MSn(672.4)51.0min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd172,MSn(672.9)50.3min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd13,MSn(673.3)20.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd174,MSn(691.0)50.5min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd98,MSn(692.8)41.3min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd113,MSn(734.4)43.2min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd110,MSn(737.3)42.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd111,MSn(737.9)42.8min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd72,MSn(737.9)37.7min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd91,MSn(738.2)40.1min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd42,MSn(742.4)30.0min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd100,MSn(743.8)41.5min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd90,MSn(747.4)40.0min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd85,MSn(749.2)39.4min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd93,MSn(750.2)40.2min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd94,MSn(750.9)40.3min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd101,MSn(756.0)41.5min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd107,MSn(756.1)42.4min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd112,MSn(761.3)43.1min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd127,MSn(761.5)44.7min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd84,MSn(761.6)39.4min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd125,MSn(762.1)44.3min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd136,MSn(762.1)45.7min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd128,MSn(762.2)44.9min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd134,MSn(762.6)45.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd88,MSn(770.3)39.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd87,MSn(771.5)39.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd102,MSn(775.8)42.1min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd103,MSn(778.4)42.1min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd104,MSn(778.7)42.2min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd65,MSn(778.6)35.7min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd105,MSn(779.6)42.2min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd123,MSn(783.8)44.2min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd184,MSn(790.7)51.4min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd96,MSn(791.4)41.0min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd182,MSn(791.4)51.2min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd145,MSn(792.2)46.7min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd73,MSn(792.7)37.7min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd144,MSn(793.0)46.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd74,MSn(793.3)37.9min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd190,MSn(795.4)51.8min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd177,MSn(795.8)50.9min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd168,MSn(799.7)49.9min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd156,MSn(800.0)48.3min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd63,MSn(800.4)35.4min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd185,MSn(800.9)51.5min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd95,MSn(807.5)40.9min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd81,MSn(815.4)38.7min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd82,MSn(816.3)38.7min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd70,MSn(816.8)37.5min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd61,MSn(823.4)35.2min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd149,MSn(832.1)47.2min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd148,MSn(835.2)47.2min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd153,MSn(835.2)47.9min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd165,MSn(835.8)49.1min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd150,MSn(837.4)47.5min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd154,MSn(844.6)48.1min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd152,MSn(844.7)47.7min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd147,MSn(845.1)47.1min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd160,MSn(845.9)48.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd175,MSn(846.2)50.7min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd166,MSn(846.6)49.1min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd157,MSn(846.9)48.3min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd114,MSn(850.5)43.3min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd116,MSn(869.8)43.5min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd140,MSn(870.3)46.3min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd179,MSn(870.4)51.1min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd138,MSn(870.9)45.9min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd29,MSn(874.4)27.0min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd193,MSn(887.1)52.0min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd186,MSn(890.6)51.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd139,MSn(895.7)46.1min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd130,MSn(899.1)45.3min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd132,MSn(900.2)45.4min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd200,MSn(904.6)53.1min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd117,MSn(906.7)43.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd118,MSn(907.8)43.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd129,MSn(912.8)45.1min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd207,MSn(915.5)54.9min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd108,MSn(916.9)42.5min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd201,MSn(916.9)53.1min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd121,MSn(920.8)43.8min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd187,MSn(927.4)51.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd183,MSn(929.8)51.3min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd191,MSn(931.5)51.9min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd181,MSn(933.7)51.2min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd161,MSn(973.2)48.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd169,MSn(989.4)50.2min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd176,MSn(989.4)50.8min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd170,MSn(989.9)50.2min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd155,MSn(1053.2)48.2min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd167,MSn(1053.4)49.6min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd171,MSn(1053.6)50.3min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd92,MSn(1105.9)40.1min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd189,MSn(1113.1)51.8min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd99,MSn(1114.7)41.4min
Set to 0000Warning: could not find scan numbers of spectrum
Cmpd76,MSn(1176.0)38.4min
Set to 0000
trypsin : cut(KR) nocuts(P) sense(C)
prev_aa and next_aa have already been read from .dat file.
Replacing 1804 protein id with full ids by parsing through the database...
searching
c:/Inetpub/wwwroot/ISB/data/BaxterMSData/nr.....5%.....10%.....15%.....20%.....30%.....35%.....40%.....45%.....50%.....60%.....65%.....70%.....75%.....80%.....90%.....95%...done
2. opening Mon_Mar_23_14-48-33_2015.spectrum2.00000.00000.3.out
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Unknown file type. No file loaded.
warning: cannot open "" for reading MS instrument info.
*Command Successful*
RETURN CODE:0
*EXECUTING: cd c:/Inetpub/wwwroot/ISB/data/BaxterMSData&
c:\Inetpub\tpp-bin\xinteract -Ninteract.pep.xml -p0.05 -l7 -PPM -O
202.pep.xml *
c:\Inetpub\tpp-bin\xinteract (TPP v4.8.0 PHILAE, Build 201411201551-6764
(mingw-i686))
PPM mode in Accurate Mass Model ...
running: "C:/Inetpub/tpp-bin/InteractParser "interact.pep.xml" "202.pep.xml"
-L"7""
file 1: 202.pep.xml
Unknown file type. No file loaded.WARNING: cannot open data file
c:/Inetpub/wwwroot/ISB/data/BaxterMSData/202.(null) in msms_run_summary tag
...Unknown file type. No file loaded.WARNING: cannot CORRECT data file
c:/Inetpub/wwwroot/ISB/data/BaxterMSData/202.(null) in msms_run_summary tag ...
processed altogether 203 results
INFO: Results written to file:
c:/Inetpub/wwwroot/ISB/data/BaxterMSData/interact.pep.xml
command completed in 0 sec
running: "C:/Inetpub/tpp-bin/DatabaseParser "interact.pep.xml""
command completed in 0 sec
running: "C:/Inetpub/tpp-bin/RefreshParser "interact.pep.xml"
"c:/Inetpub/wwwroot/ISB/data/BaxterMSData/zebrafish.1.protein.faa""
- Searching the tree...
- Linking duplicate entries... - Printing results...
- Building Commentz-Walter keyword tree...command completed in 4 sec
running: "C:/Inetpub/tpp-bin/PeptideProphetParser "interact.pep.xml"
MINPROB=0.05 PPM"
using PPM mass difference
(MASCOT)
results for charge 1: 19 id tot and 0 adj scores
results for charge 2: 75 id tot and 13 adj scores
results for charge 3: 109 id tot and 10 adj scores
results for charge 4: 0 id tot and 0 adj scores
results for charge 5: 0 id tot and 0 adj scores
results for charge 6: 0 id tot and 0 adj scores
results for charge 7: 0 id tot and 0 adj scores
init with MASCOT trypsin
MS Instrument info: Manufacturer: UNKNOWN, Model: UNKNOWN, Ionization: UNKNOWN,
Analyzer: UNKNOWN, Detector: UNKNOWN
PeptideProphet (TPP v4.8.0 PHILAE, Build 201411201551-6764 (mingw-i686))
AKeller@ISB
read in 19 1+, 75 2+, 109 3+, 0 4+, 0 5+, 0 6+, and 0 7+ spectra.
Initialising statistical models ...
Iterations: .........10.........20..
model complete after 23 iterations
command completed in 0 sec
running: "C:/Inetpub/tpp-bin/ProphetModels.pl -i interact.pep.xml"
Analyzing interact.pep.xml ...
Parsing search results "c:/Inetpub/wwwroot/ISB/data/BaxterMSData/202
(MASCOT)"...
=> Found 0 hits. (0 decoys, 0 excluded)
=> Total so far: 0 hits. (0 decoys, 0 excluded)
The system cannot find the path specified.
command completed in 1 sec
running: "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I
c:/Inetpub/wwwroot/ISB/data/BaxterMSData/interact.pep.xml"
command "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I
c:/Inetpub/wwwroot/ISB/data/BaxterMSData/interact.pep.xml" failed: Unknown error
command "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I
c:/Inetpub/wwwroot/ISB/data/BaxterMSData/interact.pep.xml" exited with non-zero
exit code: 255
QUIT - the job is incomplete
*Command FAILED*
RETURN CODE:65280
--
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