Sure I can do that. How far back do you need - mzML, pep.xml search results, something else?
On Wednesday, July 12, 2017 at 11:02:50 AM UTC-4, David Shteynberg wrote: > > Hi Jason, > > I am not sure what is going on here and without having the data it would > be difficult to pinpoint. Are you able to put together a dataset that I > can use to reproduce the bug and troubleshoot? > > Thanks, > -David > > On Wed, Jul 12, 2017 at 5:30 AM, Jason Winget <jwi...@gmail.com > <javascript:>> wrote: > >> I think some of these issues are lingering. >> >> Using TPP 5.0.0, when I run PTMProphet via Petunia, it will read the >> files and go through "iterating PTM model" etc, however I get no output >> written to the directory or the original pepXML files. >> If I copy the command from Petunia or enter it manually on the command >> line, I either get the same "failed opening file" error or an "unrecognized >> mod token" error. I have tried rearranging the arguments a few different >> ways without success. >> >> I then upgraded to TPP 5.0.1 from Sourceforge and now I get a boost error >> even in Petunia (likely the same "failed opening file" error) and the >> "unrecognized mod token" error on the command line. >> >> For reference my command line (on Windows) is as follows: >> >> *PTMProphetParser.exe >> NQR:0.984016,M:15.9949:-63.998286:-81.024835:-82.008850,STY:79.966331:-97.97690:-115.9880,K:114.042927 >> >> MZTOL=0.1 PPMTOL=1 .\interact.pep.xml .\interact.ptm.pep.xml* >> >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to spctools-discu...@googlegroups.com <javascript:>. >> To post to this group, send email to spctools...@googlegroups.com >> <javascript:>. >> Visit this group at https://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
