Hi Jason, I am not sure what is going on here and without having the data it would be difficult to pinpoint. Are you able to put together a dataset that I can use to reproduce the bug and troubleshoot?
Thanks, -David On Wed, Jul 12, 2017 at 5:30 AM, Jason Winget <[email protected]> wrote: > I think some of these issues are lingering. > > Using TPP 5.0.0, when I run PTMProphet via Petunia, it will read the files > and go through "iterating PTM model" etc, however I get no output written > to the directory or the original pepXML files. > If I copy the command from Petunia or enter it manually on the command > line, I either get the same "failed opening file" error or an "unrecognized > mod token" error. I have tried rearranging the arguments a few different > ways without success. > > I then upgraded to TPP 5.0.1 from Sourceforge and now I get a boost error > even in Petunia (likely the same "failed opening file" error) and the > "unrecognized mod token" error on the command line. > > For reference my command line (on Windows) is as follows: > > *PTMProphetParser.exe > NQR:0.984016,M:15.9949:-63.998286:-81.024835:-82.008850,STY:79.966331:-97.97690:-115.9880,K:114.042927 > MZTOL=0.1 PPMTOL=1 .\interact.pep.xml .\interact.ptm.pep.xml* > > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
