The mzML and the pepXML is the minimum I would need to test the issue. Thanks!
-David On Wed, Jul 12, 2017 at 9:04 AM, Jason Winget <[email protected]> wrote: > Sure I can do that. > How far back do you need - mzML, pep.xml search results, something else? > > On Wednesday, July 12, 2017 at 11:02:50 AM UTC-4, David Shteynberg wrote: >> >> Hi Jason, >> >> I am not sure what is going on here and without having the data it would >> be difficult to pinpoint. Are you able to put together a dataset that I >> can use to reproduce the bug and troubleshoot? >> >> Thanks, >> -David >> >> On Wed, Jul 12, 2017 at 5:30 AM, Jason Winget <[email protected]> wrote: >> >>> I think some of these issues are lingering. >>> >>> Using TPP 5.0.0, when I run PTMProphet via Petunia, it will read the >>> files and go through "iterating PTM model" etc, however I get no output >>> written to the directory or the original pepXML files. >>> If I copy the command from Petunia or enter it manually on the command >>> line, I either get the same "failed opening file" error or an "unrecognized >>> mod token" error. I have tried rearranging the arguments a few different >>> ways without success. >>> >>> I then upgraded to TPP 5.0.1 from Sourceforge and now I get a boost >>> error even in Petunia (likely the same "failed opening file" error) and the >>> "unrecognized mod token" error on the command line. >>> >>> For reference my command line (on Windows) is as follows: >>> >>> *PTMProphetParser.exe >>> NQR:0.984016,M:15.9949:-63.998286:-81.024835:-82.008850,STY:79.966331:-97.97690:-115.9880,K:114.042927 >>> MZTOL=0.1 PPMTOL=1 .\interact.pep.xml .\interact.ptm.pep.xml* >>> >>> >>> -- >>> You received this message because you are subscribed to the Google >>> Groups "spctools-discuss" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to [email protected]. >>> To post to this group, send email to [email protected]. >>> Visit this group at https://groups.google.com/group/spctools-discuss. >>> For more options, visit https://groups.google.com/d/optout. >>> >> >> -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
