I had same issues few days ago. I went thru scripts and saw some issues with pwiz-msi. Here is my workaround cd TPP_5.0.0-src
mkdir -p ./extern/ProteoWizard/pwiz-msi make pwiz-msi That will download file VERSION. However the format is not good as it has spaces instead of dot) vi ./extern/ProteoWizard/pwiz-msi/VERSION 3.0.10095 Now you need to change Makefile so that it doesn't download VERSION anymore by commenting the following lines: vi ./extern/ProteoWizard/Makefile pwiz-msi-version : # rm -f $(PWIZ_MSIDIR)/VERSION # wget -nv -O $(PWIZ_MSIDIR)/VERSION $(PWIZ_TCMSI)/VERSION\?guest=1 Then you should be good to go make all Hope that helps JC On Monday, October 17, 2016 at 10:51:36 AM UTC-7, Ali wrote: > > Dear all > > Our cluster administrator is getting the following error on Centos Linux > x86_84 when he wants to install TPP v5.0. Does any one know what might be > the problem and how can we fix the issue? > > > [root@compute-0-000 TPP_5.0.0-src]# make all > > /shared/apps/TPP/TPP_5.0.0-src/extern/ProteoWizard/Makefile:353: warning: > overriding commands for target `/shared/apps/TPP/TPP_5.0.0- > src/build/linux-x86_64' > > common.mk:449: warning: ignoring old commands for target > `/shared/apps/TPP/TPP_5.0.0-src/build/linux-x86_64' > > make: *** No rule to make target `/shared/apps/TPP/TPP_5.0.0- > src/extern/ProteoWizard/pwiz-msi', needed by > `/shared/apps/TPP/TPP_5.0.0-src/build/linux-x86_64'. > Stop. > > [root@compute-0-000 TPP_5.0.0-src]# > > > Some packages did not get downloaded with the source code ...? > > > Thank you very much, > Ali > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
