Ali- I forgot to copy a step afer editing Makefile. Sorry about that
cd TPP_5.0.0-src mkdir -p ./extern/ProteoWizard/pwiz-msi make pwiz-msi That will download file VERSION. However the format is not good as it has spaces instead of dot) vi ./extern/ProteoWizard/pwiz-msi/VERSION 3.0.10095 Now you need to change Makefile so that it doesn't download VERSION anymore by commenting the following lines: vi ./extern/ProteoWizard/Makefile pwiz-msi-version : # rm -f $(PWIZ_MSIDIR)/VERSION # wget -nv -O $(PWIZ_MSIDIR)/VERSION $(PWIZ_TCMSI)/VERSION\?guest=1 Here is the step I forgot to copy! make pwiz-msi Then you should be good to go make all On Wednesday, October 19, 2016 at 3:31:07 PM UTC-7, Ali wrote: > > Dear Jean Christophe > > He has done those steps. This was what he was getting afterwards. Thanks > again for your help! > > Sincerely, > Ali > > On Wednesday, October 19, 2016 at 3:35:37 PM UTC-4, Jean-Christophe Ducom > wrote: >> >> I do not see the step where VERSION file has to be modified (replace >> space with dot) after 'make pwiz-msi' fails >> Hope that helps >> JC >> >> >> On Wednesday, October 19, 2016 at 10:10:17 AM UTC-7, Ali wrote: >>> >>> Dear Jean Christophe >>> >>> We are still having issue with the installation. After applying your >>> solution he is now getting the following error: >>> >>> *[root@nkr-rc-neu TPP_5.0.0-src]# mkdir -p >>> ./extern/ProteoWizard/pwiz-msi* >>> >>> *[root@nkr-rc-neu TPP_5.0.0-src]# make pwiz-msi* >>> >>> */root/TPP_5.0.0-src/extern/ProteoWizard/Makefile:353: warning: >>> overriding commands for target `/root/TPP_5.0.0-src/build/linux-x86_64'* >>> >>> *common.mk:448 <http://common.mk:448/>: warning: ignoring old commands >>> for target `/root/TPP_5.0.0-src/build/linux-x86_64'* >>> >>> *rm -f /root/TPP_5.0.0-src/extern/ProteoWizard/pwiz-msi/VERSION* >>> >>> *wget -nv -O >>> /root/TPP_5.0.0-src/extern/ProteoWizard/pwiz-msi/VERSION >>> https://teamcity.labkey.org/repository/download/bt83/.lastSuccessful/VERSION\?guest=1 >>> >>> <https://teamcity.labkey.org/repository/download/bt83/.lastSuccessful/VERSION%5C?guest=1>* >>> >>> *2016-10-19 12:28:37 >>> URL:https://teamcity.labkey.org/repository/download/bt83/.lastSuccessful/VERSION?guest=1 >>> >>> <https://teamcity.labkey.org/repository/download/bt83/.lastSuccessful/VERSION?guest=1> >>> [9/9] >>> -> "/root/TPP_5.0.0-src/extern/ProteoWizard/pwiz-msi/VERSION" [1]* >>> >>> *rm -f pwiz-setup-*-x86_64.msi* >>> >>> *wget --content-disposition -nv -P >>> /root/TPP_5.0.0-src/extern/ProteoWizard/pwiz-msi \* >>> >>> * >>> >>> https://teamcity.labkey.org/repository/download/bt83/.lastSuccessful/pwiz-setup-3 >>> >>> <https://teamcity.labkey.org/repository/download/bt83/.lastSuccessful/pwiz-setup-3> >>> 0 >>> 10107-x86_64.msi\?guest=1* >>> >>> *Authorization failed.* >>> >>> *wget: unable to resolve host address “10107-x86_64.msi”* >>> >>> *make: *** [pwiz-msi] Error 4* >>> >>> *[root@nkr-rc-neu TPP_5.0.0-src]# vi ./extern/ProteoWizard/Makefile* >>> >>> *[root@nkr-rc-neu TPP_5.0.0-src]# make all* >>> >>> */root/TPP_5.0.0-src/extern/ProteoWizard/Makefile:353: warning: >>> overriding commands for target `/root/TPP_5.0.0-src/build/linux-x86_64'* >>> >>> *common.mk:448 <http://common.mk:448/>: warning: ignoring old commands >>> for target `/root/TPP_5.0.0-src/build/linux-x86_64'* >>> >>> *cp /root/TPP_5.0.0-src/extern/ProteoWizard/pwiz-msi/ >>> /root/TPP_5.0.0-src/build/linux-x86_64* >>> >>> *cp: omitting directory >>> `/root/TPP_5.0.0-src/extern/ProteoWizard/pwiz-msi/'* >>> >>> *make: *** [/root/TPP_5.0.0-src/build/linux-x86_64] Error 1* >>> >>> *[root@nkr-rc-neu TPP_5.0.0-src]#* >>> >>> >>> Do you know what should we do now? >>> >>> >>> Many Thanks. >>> >>> >>> Sincerely, >>> >>> >>> Ali >>> >>> On Wednesday, October 19, 2016 at 2:38:56 AM UTC-4, Jean-Christophe >>> Ducom wrote: >>>> >>>> I had same issues few days ago. I went thru scripts and saw some issues >>>> with pwiz-msi. >>>> Here is my workaround >>>> cd TPP_5.0.0-src >>>> >>>> mkdir -p ./extern/ProteoWizard/pwiz-msi >>>> >>>> make pwiz-msi >>>> >>>> That will download file VERSION. However the format is not good as it >>>> has spaces instead of dot) >>>> >>>> vi ./extern/ProteoWizard/pwiz-msi/VERSION >>>> >>>> 3.0.10095 >>>> >>>> >>>> Now you need to change Makefile so that it doesn't download VERSION >>>> anymore by commenting the following lines: >>>> >>>> vi ./extern/ProteoWizard/Makefile >>>> >>>> pwiz-msi-version : >>>> >>>> # rm -f $(PWIZ_MSIDIR)/VERSION >>>> >>>> # wget -nv -O $(PWIZ_MSIDIR)/VERSION >>>> $(PWIZ_TCMSI)/VERSION\?guest=1 >>>> >>>> >>>> Then you should be good to go >>>> >>>> make all >>>> >>>> >>>> Hope that helps >>>> JC >>>> >>>> On Monday, October 17, 2016 at 10:51:36 AM UTC-7, Ali wrote: >>>>> >>>>> Dear all >>>>> >>>>> Our cluster administrator is getting the following error on Centos >>>>> Linux x86_84 when he wants to install TPP v5.0. Does any one know >>>>> what might be the problem and how can we fix the issue? >>>>> >>>>> >>>>> [root@compute-0-000 TPP_5.0.0-src]# make all >>>>> >>>>> /shared/apps/TPP/TPP_5.0.0-src/extern/ProteoWizard/Makefile:353: >>>>> warning: overriding commands for target `/shared/apps/TPP/TPP_5.0.0- >>>>> src/build/linux-x86_64' >>>>> >>>>> common.mk:449: warning: ignoring old commands for target >>>>> `/shared/apps/TPP/TPP_5.0.0-src/build/linux-x86_64' >>>>> >>>>> make: *** No rule to make target `/shared/apps/TPP/TPP_5.0.0- >>>>> src/extern/ProteoWizard/pwiz-msi', needed by >>>>> `/shared/apps/TPP/TPP_5.0.0-src/build/linux-x86_64'. Stop. >>>>> >>>>> [root@compute-0-000 TPP_5.0.0-src]# >>>>> >>>>> >>>>> Some packages did not get downloaded with the source code ...? >>>>> >>>>> >>>>> Thank you very much, >>>>> Ali >>>>> >>>> -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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