Thank you so much Jean Christphe! It fixed the issue. Sincerely,
Ali On Thursday, October 20, 2016 at 1:39:24 PM UTC-4, Jean-Christophe Ducom wrote: > > Ali- > I forgot to copy a step afer editing Makefile. Sorry about that > > > cd TPP_5.0.0-src > > mkdir -p ./extern/ProteoWizard/pwiz-msi > > make pwiz-msi > > That will download file VERSION. However the format is not good as it has > spaces instead of dot) > > vi ./extern/ProteoWizard/pwiz-msi/VERSION > > 3.0.10095 > > > Now you need to change Makefile so that it doesn't download VERSION > anymore by commenting the following lines: > > vi ./extern/ProteoWizard/Makefile > > pwiz-msi-version : > > # rm -f $(PWIZ_MSIDIR)/VERSION > > # wget -nv -O $(PWIZ_MSIDIR)/VERSION $(PWIZ_TCMSI)/VERSION\?guest=1 > > > Here is the step I forgot to copy! > > make pwiz-msi > > > Then you should be good to go > > make all > > > > > On Wednesday, October 19, 2016 at 3:31:07 PM UTC-7, Ali wrote: >> >> Dear Jean Christophe >> >> He has done those steps. This was what he was getting afterwards. Thanks >> again for your help! >> >> Sincerely, >> Ali >> >> On Wednesday, October 19, 2016 at 3:35:37 PM UTC-4, Jean-Christophe Ducom >> wrote: >>> >>> I do not see the step where VERSION file has to be modified (replace >>> space with dot) after 'make pwiz-msi' fails >>> Hope that helps >>> JC >>> >>> >>> On Wednesday, October 19, 2016 at 10:10:17 AM UTC-7, Ali wrote: >>>> >>>> Dear Jean Christophe >>>> >>>> We are still having issue with the installation. After applying your >>>> solution he is now getting the following error: >>>> >>>> *[root@nkr-rc-neu TPP_5.0.0-src]# mkdir -p >>>> ./extern/ProteoWizard/pwiz-msi* >>>> >>>> *[root@nkr-rc-neu TPP_5.0.0-src]# make pwiz-msi* >>>> >>>> */root/TPP_5.0.0-src/extern/ProteoWizard/Makefile:353: warning: >>>> overriding commands for target `/root/TPP_5.0.0-src/build/linux-x86_64'* >>>> >>>> *common.mk:448 <http://common.mk:448/>: warning: ignoring old commands >>>> for target `/root/TPP_5.0.0-src/build/linux-x86_64'* >>>> >>>> *rm -f /root/TPP_5.0.0-src/extern/ProteoWizard/pwiz-msi/VERSION* >>>> >>>> *wget -nv -O >>>> /root/TPP_5.0.0-src/extern/ProteoWizard/pwiz-msi/VERSION >>>> https://teamcity.labkey.org/repository/download/bt83/.lastSuccessful/VERSION\?guest=1 >>>> >>>> <https://teamcity.labkey.org/repository/download/bt83/.lastSuccessful/VERSION%5C?guest=1>* >>>> >>>> *2016-10-19 12:28:37 >>>> URL:https://teamcity.labkey.org/repository/download/bt83/.lastSuccessful/VERSION?guest=1 >>>> >>>> <https://teamcity.labkey.org/repository/download/bt83/.lastSuccessful/VERSION?guest=1> >>>> [9/9] >>>> -> "/root/TPP_5.0.0-src/extern/ProteoWizard/pwiz-msi/VERSION" [1]* >>>> >>>> *rm -f pwiz-setup-*-x86_64.msi* >>>> >>>> *wget --content-disposition -nv -P >>>> /root/TPP_5.0.0-src/extern/ProteoWizard/pwiz-msi \* >>>> >>>> * >>>> >>>> https://teamcity.labkey.org/repository/download/bt83/.lastSuccessful/pwiz-setup-3 >>>> >>>> <https://teamcity.labkey.org/repository/download/bt83/.lastSuccessful/pwiz-setup-3> >>>> 0 >>>> 10107-x86_64.msi\?guest=1* >>>> >>>> *Authorization failed.* >>>> >>>> *wget: unable to resolve host address “10107-x86_64.msi”* >>>> >>>> *make: *** [pwiz-msi] Error 4* >>>> >>>> *[root@nkr-rc-neu TPP_5.0.0-src]# vi ./extern/ProteoWizard/Makefile* >>>> >>>> *[root@nkr-rc-neu TPP_5.0.0-src]# make all* >>>> >>>> */root/TPP_5.0.0-src/extern/ProteoWizard/Makefile:353: warning: >>>> overriding commands for target `/root/TPP_5.0.0-src/build/linux-x86_64'* >>>> >>>> *common.mk:448 <http://common.mk:448/>: warning: ignoring old commands >>>> for target `/root/TPP_5.0.0-src/build/linux-x86_64'* >>>> >>>> *cp /root/TPP_5.0.0-src/extern/ProteoWizard/pwiz-msi/ >>>> /root/TPP_5.0.0-src/build/linux-x86_64* >>>> >>>> *cp: omitting directory >>>> `/root/TPP_5.0.0-src/extern/ProteoWizard/pwiz-msi/'* >>>> >>>> *make: *** [/root/TPP_5.0.0-src/build/linux-x86_64] Error 1* >>>> >>>> *[root@nkr-rc-neu TPP_5.0.0-src]#* >>>> >>>> >>>> Do you know what should we do now? >>>> >>>> >>>> Many Thanks. >>>> >>>> >>>> Sincerely, >>>> >>>> >>>> Ali >>>> >>>> On Wednesday, October 19, 2016 at 2:38:56 AM UTC-4, Jean-Christophe >>>> Ducom wrote: >>>>> >>>>> I had same issues few days ago. I went thru scripts and saw some >>>>> issues with pwiz-msi. >>>>> Here is my workaround >>>>> cd TPP_5.0.0-src >>>>> >>>>> mkdir -p ./extern/ProteoWizard/pwiz-msi >>>>> >>>>> make pwiz-msi >>>>> >>>>> That will download file VERSION. However the format is not good as it >>>>> has spaces instead of dot) >>>>> >>>>> vi ./extern/ProteoWizard/pwiz-msi/VERSION >>>>> >>>>> 3.0.10095 >>>>> >>>>> >>>>> Now you need to change Makefile so that it doesn't download VERSION >>>>> anymore by commenting the following lines: >>>>> >>>>> vi ./extern/ProteoWizard/Makefile >>>>> >>>>> pwiz-msi-version : >>>>> >>>>> # rm -f $(PWIZ_MSIDIR)/VERSION >>>>> >>>>> # wget -nv -O $(PWIZ_MSIDIR)/VERSION >>>>> $(PWIZ_TCMSI)/VERSION\?guest=1 >>>>> >>>>> >>>>> Then you should be good to go >>>>> >>>>> make all >>>>> >>>>> >>>>> Hope that helps >>>>> JC >>>>> >>>>> On Monday, October 17, 2016 at 10:51:36 AM UTC-7, Ali wrote: >>>>>> >>>>>> Dear all >>>>>> >>>>>> Our cluster administrator is getting the following error on Centos >>>>>> Linux x86_84 when he wants to install TPP v5.0. Does any one know >>>>>> what might be the problem and how can we fix the issue? >>>>>> >>>>>> >>>>>> [root@compute-0-000 TPP_5.0.0-src]# make all >>>>>> >>>>>> /shared/apps/TPP/TPP_5.0.0-src/extern/ProteoWizard/Makefile:353: >>>>>> warning: overriding commands for target `/shared/apps/TPP/TPP_5.0.0- >>>>>> src/build/linux-x86_64' >>>>>> >>>>>> common.mk:449: warning: ignoring old commands for target >>>>>> `/shared/apps/TPP/TPP_5.0.0-src/build/linux-x86_64' >>>>>> >>>>>> make: *** No rule to make target `/shared/apps/TPP/TPP_5.0.0- >>>>>> src/extern/ProteoWizard/pwiz-msi', needed by >>>>>> `/shared/apps/TPP/TPP_5.0.0-src/build/linux-x86_64'. Stop. >>>>>> >>>>>> [root@compute-0-000 TPP_5.0.0-src]# >>>>>> >>>>>> >>>>>> Some packages did not get downloaded with the source code ...? >>>>>> >>>>>> >>>>>> Thank you very much, >>>>>> Ali >>>>>> >>>>> -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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