I do not see the step where VERSION file has to be modified (replace space with dot) after 'make pwiz-msi' fails Hope that helps JC
On Wednesday, October 19, 2016 at 10:10:17 AM UTC-7, Ali wrote: > > Dear Jean Christophe > > We are still having issue with the installation. After applying your > solution he is now getting the following error: > > *[root@nkr-rc-neu TPP_5.0.0-src]# mkdir -p ./extern/ProteoWizard/pwiz-msi* > > *[root@nkr-rc-neu TPP_5.0.0-src]# make pwiz-msi* > > */root/TPP_5.0.0-src/extern/ProteoWizard/Makefile:353: warning: overriding > commands for target `/root/TPP_5.0.0-src/build/linux-x86_64'* > > *common.mk:448 <http://common.mk:448/>: warning: ignoring old commands for > target `/root/TPP_5.0.0-src/build/linux-x86_64'* > > *rm -f /root/TPP_5.0.0-src/extern/ProteoWizard/pwiz-msi/VERSION* > > *wget -nv -O > /root/TPP_5.0.0-src/extern/ProteoWizard/pwiz-msi/VERSION > https://teamcity.labkey.org/repository/download/bt83/.lastSuccessful/VERSION\?guest=1 > > <https://teamcity.labkey.org/repository/download/bt83/.lastSuccessful/VERSION%5C?guest=1>* > > *2016-10-19 12:28:37 > URL:https://teamcity.labkey.org/repository/download/bt83/.lastSuccessful/VERSION?guest=1 > > <https://teamcity.labkey.org/repository/download/bt83/.lastSuccessful/VERSION?guest=1> > [9/9] > -> "/root/TPP_5.0.0-src/extern/ProteoWizard/pwiz-msi/VERSION" [1]* > > *rm -f pwiz-setup-*-x86_64.msi* > > *wget --content-disposition -nv -P > /root/TPP_5.0.0-src/extern/ProteoWizard/pwiz-msi \* > > * > > https://teamcity.labkey.org/repository/download/bt83/.lastSuccessful/pwiz-setup-3 > > <https://teamcity.labkey.org/repository/download/bt83/.lastSuccessful/pwiz-setup-3> > 0 > 10107-x86_64.msi\?guest=1* > > *Authorization failed.* > > *wget: unable to resolve host address “10107-x86_64.msi”* > > *make: *** [pwiz-msi] Error 4* > > *[root@nkr-rc-neu TPP_5.0.0-src]# vi ./extern/ProteoWizard/Makefile* > > *[root@nkr-rc-neu TPP_5.0.0-src]# make all* > > */root/TPP_5.0.0-src/extern/ProteoWizard/Makefile:353: warning: overriding > commands for target `/root/TPP_5.0.0-src/build/linux-x86_64'* > > *common.mk:448 <http://common.mk:448/>: warning: ignoring old commands for > target `/root/TPP_5.0.0-src/build/linux-x86_64'* > > *cp /root/TPP_5.0.0-src/extern/ProteoWizard/pwiz-msi/ > /root/TPP_5.0.0-src/build/linux-x86_64* > > *cp: omitting directory > `/root/TPP_5.0.0-src/extern/ProteoWizard/pwiz-msi/'* > > *make: *** [/root/TPP_5.0.0-src/build/linux-x86_64] Error 1* > > *[root@nkr-rc-neu TPP_5.0.0-src]#* > > > Do you know what should we do now? > > > Many Thanks. > > > Sincerely, > > > Ali > > On Wednesday, October 19, 2016 at 2:38:56 AM UTC-4, Jean-Christophe Ducom > wrote: >> >> I had same issues few days ago. I went thru scripts and saw some issues >> with pwiz-msi. >> Here is my workaround >> cd TPP_5.0.0-src >> >> mkdir -p ./extern/ProteoWizard/pwiz-msi >> >> make pwiz-msi >> >> That will download file VERSION. However the format is not good as it has >> spaces instead of dot) >> >> vi ./extern/ProteoWizard/pwiz-msi/VERSION >> >> 3.0.10095 >> >> >> Now you need to change Makefile so that it doesn't download VERSION >> anymore by commenting the following lines: >> >> vi ./extern/ProteoWizard/Makefile >> >> pwiz-msi-version : >> >> # rm -f $(PWIZ_MSIDIR)/VERSION >> >> # wget -nv -O $(PWIZ_MSIDIR)/VERSION $(PWIZ_TCMSI)/VERSION\?guest=1 >> >> >> Then you should be good to go >> >> make all >> >> >> Hope that helps >> JC >> >> On Monday, October 17, 2016 at 10:51:36 AM UTC-7, Ali wrote: >>> >>> Dear all >>> >>> Our cluster administrator is getting the following error on Centos >>> Linux x86_84 when he wants to install TPP v5.0. Does any one know what >>> might be the problem and how can we fix the issue? >>> >>> >>> [root@compute-0-000 TPP_5.0.0-src]# make all >>> >>> /shared/apps/TPP/TPP_5.0.0-src/extern/ProteoWizard/Makefile:353: >>> warning: overriding commands for target `/shared/apps/TPP/TPP_5.0.0- >>> src/build/linux-x86_64' >>> >>> common.mk:449: warning: ignoring old commands for target >>> `/shared/apps/TPP/TPP_5.0.0-src/build/linux-x86_64' >>> >>> make: *** No rule to make target `/shared/apps/TPP/TPP_5.0.0- >>> src/extern/ProteoWizard/pwiz-msi', needed by >>> `/shared/apps/TPP/TPP_5.0.0-src/build/linux-x86_64'. Stop. >>> >>> [root@compute-0-000 TPP_5.0.0-src]# >>> >>> >>> Some packages did not get downloaded with the source code ...? >>> >>> >>> Thank you very much, >>> Ali >>> >> -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
