Dear Jean Christophe He has done those steps. This was what he was getting afterwards. Thanks again for your help!
Sincerely, Ali On Wednesday, October 19, 2016 at 3:35:37 PM UTC-4, Jean-Christophe Ducom wrote: > > I do not see the step where VERSION file has to be modified (replace space > with dot) after 'make pwiz-msi' fails > Hope that helps > JC > > > On Wednesday, October 19, 2016 at 10:10:17 AM UTC-7, Ali wrote: >> >> Dear Jean Christophe >> >> We are still having issue with the installation. After applying your >> solution he is now getting the following error: >> >> *[root@nkr-rc-neu TPP_5.0.0-src]# mkdir -p ./extern/ProteoWizard/pwiz-msi* >> >> *[root@nkr-rc-neu TPP_5.0.0-src]# make pwiz-msi* >> >> */root/TPP_5.0.0-src/extern/ProteoWizard/Makefile:353: warning: >> overriding commands for target `/root/TPP_5.0.0-src/build/linux-x86_64'* >> >> *common.mk:448 <http://common.mk:448/>: warning: ignoring old commands >> for target `/root/TPP_5.0.0-src/build/linux-x86_64'* >> >> *rm -f /root/TPP_5.0.0-src/extern/ProteoWizard/pwiz-msi/VERSION* >> >> *wget -nv -O >> /root/TPP_5.0.0-src/extern/ProteoWizard/pwiz-msi/VERSION >> https://teamcity.labkey.org/repository/download/bt83/.lastSuccessful/VERSION\?guest=1 >> >> <https://teamcity.labkey.org/repository/download/bt83/.lastSuccessful/VERSION%5C?guest=1>* >> >> *2016-10-19 12:28:37 >> URL:https://teamcity.labkey.org/repository/download/bt83/.lastSuccessful/VERSION?guest=1 >> >> <https://teamcity.labkey.org/repository/download/bt83/.lastSuccessful/VERSION?guest=1> >> [9/9] >> -> "/root/TPP_5.0.0-src/extern/ProteoWizard/pwiz-msi/VERSION" [1]* >> >> *rm -f pwiz-setup-*-x86_64.msi* >> >> *wget --content-disposition -nv -P >> /root/TPP_5.0.0-src/extern/ProteoWizard/pwiz-msi \* >> >> * >> >> https://teamcity.labkey.org/repository/download/bt83/.lastSuccessful/pwiz-setup-3 >> >> <https://teamcity.labkey.org/repository/download/bt83/.lastSuccessful/pwiz-setup-3> >> 0 >> 10107-x86_64.msi\?guest=1* >> >> *Authorization failed.* >> >> *wget: unable to resolve host address “10107-x86_64.msi”* >> >> *make: *** [pwiz-msi] Error 4* >> >> *[root@nkr-rc-neu TPP_5.0.0-src]# vi ./extern/ProteoWizard/Makefile* >> >> *[root@nkr-rc-neu TPP_5.0.0-src]# make all* >> >> */root/TPP_5.0.0-src/extern/ProteoWizard/Makefile:353: warning: >> overriding commands for target `/root/TPP_5.0.0-src/build/linux-x86_64'* >> >> *common.mk:448 <http://common.mk:448/>: warning: ignoring old commands >> for target `/root/TPP_5.0.0-src/build/linux-x86_64'* >> >> *cp /root/TPP_5.0.0-src/extern/ProteoWizard/pwiz-msi/ >> /root/TPP_5.0.0-src/build/linux-x86_64* >> >> *cp: omitting directory >> `/root/TPP_5.0.0-src/extern/ProteoWizard/pwiz-msi/'* >> >> *make: *** [/root/TPP_5.0.0-src/build/linux-x86_64] Error 1* >> >> *[root@nkr-rc-neu TPP_5.0.0-src]#* >> >> >> Do you know what should we do now? >> >> >> Many Thanks. >> >> >> Sincerely, >> >> >> Ali >> >> On Wednesday, October 19, 2016 at 2:38:56 AM UTC-4, Jean-Christophe Ducom >> wrote: >>> >>> I had same issues few days ago. I went thru scripts and saw some issues >>> with pwiz-msi. >>> Here is my workaround >>> cd TPP_5.0.0-src >>> >>> mkdir -p ./extern/ProteoWizard/pwiz-msi >>> >>> make pwiz-msi >>> >>> That will download file VERSION. However the format is not good as it >>> has spaces instead of dot) >>> >>> vi ./extern/ProteoWizard/pwiz-msi/VERSION >>> >>> 3.0.10095 >>> >>> >>> Now you need to change Makefile so that it doesn't download VERSION >>> anymore by commenting the following lines: >>> >>> vi ./extern/ProteoWizard/Makefile >>> >>> pwiz-msi-version : >>> >>> # rm -f $(PWIZ_MSIDIR)/VERSION >>> >>> # wget -nv -O $(PWIZ_MSIDIR)/VERSION >>> $(PWIZ_TCMSI)/VERSION\?guest=1 >>> >>> >>> Then you should be good to go >>> >>> make all >>> >>> >>> Hope that helps >>> JC >>> >>> On Monday, October 17, 2016 at 10:51:36 AM UTC-7, Ali wrote: >>>> >>>> Dear all >>>> >>>> Our cluster administrator is getting the following error on Centos >>>> Linux x86_84 when he wants to install TPP v5.0. Does any one know what >>>> might be the problem and how can we fix the issue? >>>> >>>> >>>> [root@compute-0-000 TPP_5.0.0-src]# make all >>>> >>>> /shared/apps/TPP/TPP_5.0.0-src/extern/ProteoWizard/Makefile:353: >>>> warning: overriding commands for target `/shared/apps/TPP/TPP_5.0.0- >>>> src/build/linux-x86_64' >>>> >>>> common.mk:449: warning: ignoring old commands for target >>>> `/shared/apps/TPP/TPP_5.0.0-src/build/linux-x86_64' >>>> >>>> make: *** No rule to make target `/shared/apps/TPP/TPP_5.0.0- >>>> src/extern/ProteoWizard/pwiz-msi', needed by >>>> `/shared/apps/TPP/TPP_5.0.0-src/build/linux-x86_64'. Stop. >>>> >>>> [root@compute-0-000 TPP_5.0.0-src]# >>>> >>>> >>>> Some packages did not get downloaded with the source code ...? >>>> >>>> >>>> Thank you very much, >>>> Ali >>>> >>> -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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