No, there isn't a native tool for Linux that reads vendor formats. Unfortunately, vendor formats are proprietary and requires the vendor drivers to access those files and convert them. All of those drivers are Windows only, as the vendors have decided that is their platform of choice. Thermo will eventually release a Linux compatible driver set for Mono, maybe you can even get your hands on the development version - but it will only read the file. Converting it to another format will require additional coding or interfacing with ProteoWizard.
One possible solution would be to create a Windows virtual machine for converting vendor formats. It can be fired up inside Linux, then convert the vendor files to mzML using msconvert from ProteoWizard, copy the mzML files back to your Linux filesystem, and wind down the VM. Cheers, Mike -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
