Never received a response back from the folks at ProteoWizard. If anyone else has learned of anything new, please share!
On Monday, July 30, 2018 at 8:54:34 PM UTC-5, Adam Rabalski wrote: > > Hi Mike, > > Thanks for the clarification. I've sent the folks at ProteoWizard an > e-mail. Anything I learn I'll post in the forum. > > Best, > > Adam > > On Monday, July 30, 2018 at 7:10:23 PM UTC-5, Michael Hoopmann wrote: >> >> Hi Adam, >> Yes, that is the linux compatible driver. Specifically, it works through >> Mono. However, I'm not sure if any existing converters have been updated to >> make use of it. msconvert is maintained by ProteoWizard, and it might be >> best to see if they have a linux version that uses those drivers. I am not >> sure what VM we use for our msconvert via linux, but perhaps someone else >> on this board knows. >> Cheers, >> Mike >> >> On Monday, July 30, 2018 at 12:54:45 PM UTC-7, Adam Rabalski wrote: >>> >>> Hi Mike, >>> >>> Do you know if this has changed recently? I see that Thermo has a >>> RawFileReader that they say is compatible with linux now >>> http://planetorbitrap.com/rawfilereader#.W19raqdKi71 Is this the linux >>> compatible driver you speak of? Is there a msconvert version that can take >>> the vendor library from thermo and convert raw -> mzML in linux? Or is this >>> still only possible through mono or a windows vm? How does your group at >>> ISB handle this and which VM setup do you recommend? >>> >>> Best, >>> >>> Adam >>> >>> On Saturday, June 2, 2018 at 11:06:48 AM UTC-5, Michael Hoopmann wrote: >>>> >>>> No, there isn't a native tool for Linux that reads vendor formats. >>>> Unfortunately, vendor formats are proprietary and requires the vendor >>>> drivers to access those files and convert them. All of those drivers are >>>> Windows only, as the vendors have decided that is their platform of >>>> choice. >>>> Thermo will eventually release a Linux compatible driver set for Mono, >>>> maybe you can even get your hands on the development version - but it will >>>> only read the file. Converting it to another format will require >>>> additional >>>> coding or interfacing with ProteoWizard. >>>> >>>> One possible solution would be to create a Windows virtual machine for >>>> converting vendor formats. It can be fired up inside Linux, then convert >>>> the vendor files to mzML using msconvert from ProteoWizard, copy the mzML >>>> files back to your Linux filesystem, and wind down the VM. >>>> >>>> Cheers, >>>> Mike >>>> >>>> -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
