or 100 variables as well, not only to thousands or millions. If no
> prior expectation about this signal existed (which the mere presence of so
> many variables usually implies), no hypothesis test should be performed at
> all. The ignorance of this rule is one of the main reasons why
expectation about this signal existed (which the mere
> presence of so many variables usually implies), no hypothesis test should
> be performed at all. The ignorance of this rule is one of the main reasons
> why so many GWAS and voxel-based morphometry studies fail to be replicable.
>
> Bes
easons why so many GWAS
and voxel-based morphometry studies fail to be replicable.
Best wishes,
Philipp
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populations, or historical collections.
M
From: William Gelnaw [mailto:wgel...@gmail.com]
Sent: Wednesday, May 31, 2017 3:41 PM
To: mitte...@univie.ac.at
Cc: MORPHMET <morphmet@morphometrics.org>
Subject: Re: [MORPHMET] Re: number of landmarks and sample size
I'm currently working on a paper that
Gelnaw [mailto:wgel...@gmail.com]
Sent: Wednesday, May 31, 2017 5:41 PM
To: mitte...@univie.ac.at
Cc: MORPHMET <morphmet@morphometrics.org>
Subject: Re: [MORPHMET] Re: number of landmarks and sample size
I'm currently working on a paper that deals with the problem of
over-parame
E Device
>
>
>
>
>
> Original message
>
> From: Amber Wheat
>
> Date:11/18/2014 10:20 AM (GMT-06:00)
>
> To: morp...@morphometrics.org
>
> Subject: [MORPHMET] EDMA analyses
>
>
>
>
>
>
> I'm trying to us
> Tim Cole
>
>
>
>
>
>
>
>
>
>
>
> Sent from my T-Mobile 4G LTE Device
>
>
>
>
>
> Original message
>
> From: Amber Wheat
>
> Date:11/18/2014 10:20 AM (GMT-06:00)
>
> To: morphmet@mo
t;
> For these reasons, I do not see any disadvantage of measuring a large
> number of landmarks, except for a waste of time perhaps. If life time is an
> issue, one can optimize landmark schemes as suggested by Jim or Aki.
>
> Best,
>
> Philipp
>
> --
> MORPHME
the analysis, but I have
> just this one individual per population... would it be totally nonesens in
> a statistical point of view?
>
> Thanks very much for your help!
>
> Best regards
> Lea
--
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uld it be totally nonesens in a
statistical point of view?
Thanks very much for your help!
Best regards
Lea
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landmark schemes as suggested by Jim or Aki.
Best,
Philipp
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inal Message-
From: Murat Maga [mailto:m...@uw.edu]
Sent: Wednesday, May 31, 2017 12:33 PM
To: Mike Collyer <mlcoll...@gmail.com>; Lea Wolter <leawolter...@gmail.com>
Cc: MORPHMET <morphmet@morphometrics.org>
Subject: RE: [MORPHMET] number of landmarks and sample size
I want to chim
ter...@gmail.com>
Cc: MORPHMET <morphmet@morphometrics.org>
Subject: Re: [MORPHMET] number of landmarks and sample size
Dear Lea,
I see others have responded to your inquiry, already. I thought I would add an
additional perspective.
Your question about statistical significance requires asking
lly nonesens in a
> statistical point of view?
>
> Thanks very much for your help!
>
> Best regards
> Lea
>
> --
> MORPHMET may be accessed via its webpage at http://www.morphometrics.org
> ---
> You received this message because you are subscribed to the Google G
n
differences are relatively large and the number of landmarks was not
particularly large. Again, they were empirical studies and one cannot
say how generalizable they are.
Anyway, I look forward to this new paper and hope it will be announced
in MORPHMET, as well as I look forward to Aki's paper.
the sternum I thought about 7 or 9 landmarks, so at most I would also get
> 18 landmarks like in the paper.
>
> I would also like to use two type specimens in the analysis, but I have
> just this one individual per population... would it be totally nonesens in
> a statistical point of vi
? The data data distribution does not
>> change with the change of axes lines. I noticed some GMM papers have the
>> axes at 0.
>>
>> Thanks all for the help,
>>
>> Helmi Hadi,
>> School of Health Scienes,
>> Universiti Sains Malaysia
>>
&
gt; Thanks all for the help,
>
> Helmi Hadi,
> School of Health Scienes,
> Universiti Sains Malaysia
>
> --
> MORPHMET may be accessed via its webpage at http://www.morphometrics.org
> ---
> You received this message because you are subscribed to the Google Groups
> "M
personally
>> drawn the dotted line there). I don't mind this output, but does it matter
>> to have the axes cut at the 0 value? The data data distribution does not
>> change with the change of axes lines. I noticed some GMM papers have the
>> axes at 0.
>>
>>
axes at 0.
>
> Thanks all for the help,
>
> Helmi Hadi,
> School of Health Scienes,
> Universiti Sains Malaysia
>
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Dear Morphmet list,
first, thank you all for the very interesting and stimulating posts.
In my humble opinion, not being PCA a "predictive" tool, it can be
easily misused as such. Personally, I most frequently use PCA to have a
quick look at what my data looks like. In other word
deviation(s) to the PCA and then warping the Procrustes average
>> shape to these standard deviations? Maybe my understanding of PCA is
>> limited, but I was under the impression that in GPA the principal
>> components are only statistical variance, and don't represent something
&
fic individual and compare that shape to the Procrustes average.
> Maybe this is not correct?
>
> Thanks in advance, I appreciate any help you can give me.
>
> David
>
>
>
>
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tology,
Chinese Academy of Sciences, 39 Beijing, Donglu, Nanjing, China
_____
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ph/rohlf
P Please consider the environment before printing this email
From: mahendiran mylswamy [mailto:mahenr...@gmail.com]
Sent: Monday, May 15, 2017 2:31 AM
To: f.james.ro...@stonybrook.edu
Cc: morphmet@morphometrics.org; dsbriss_dmd <orthofl...@gmail.com>; K. James
Soda <k.ja
>>
>> & Research Professor. Dept. of Anthropology
>>
>> Stony Brook University 11794-4364
>>
>> WWW: http://life.bio.sunysb.edu/morph/rohlf
>>
>> P Please consider the environment before printing this email
>>
>>
>>
>
unday, May 14, 2017 7:28 PM
*To:* dsbriss_dmd <orthofl...@gmail.com <mailto:orthofl...@gmail.com>>
*Cc:* MORPHMET <morphmet@morphometrics.org
<mailto:morphmet@morphometrics.org>>
*Subject:* Re: [MORPHMET] Interpreting PCA results
Dear David,
Grea
Evol.
>
> & Research Professor. Dept. of Anthropology
>
> Stony Brook University 11794-4364
>
> WWW: http://life.bio.sunysb.edu/morph/rohlf
>
> P Please consider the environment before printing this email
>
>
>
> *From:* K. James Soda [mailto:k.jamess...@gmail.com]
> *Sen
y
Stony Brook University 11794-4364
WWW: http://life.bio.sunysb.edu/morph/rohlf
P Please consider the environment before printing this email
From: K. James Soda [mailto:k.jamess...@gmail.com]
Sent: Sunday, May 14, 2017 7:28 PM
To: dsbriss_dmd <orthofl...@gmail.com>
Cc: MORP
hat
> specific individual and compare that shape to the Procrustes average.
> Maybe this is not correct?
>
> Thanks in advance, I appreciate any help you can give me.
>
> David
>
>
>
> --
> MORPHMET may be accessed via its webpage at http://www.morphometrics.org
ooking for a solution! Can anyone help
> me?
>
> Thank you very much,
>
> Gabriel Piette-Lauziere
> Master student
> Laval University
>
> --
> MORPHMET may be accessed via its webpage at http://www.morphometrics.org
> ---
> You received this message because you are subscr
bsite are no longer functioning. I found an archived version
>> of the software online, but it constantly crashes when I import my data. Is
>> this the only free software that can be used to apply landmark points to 3D
>> data?
>>
>> Thanks in advance!
>>
;path" of my tps files is now fixed with
the original computer. So I'm looking for a solution! Can anyone help me?
Thank you very much,
Gabriel Piette-Lauziere
Master student
Laval University
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ate any help you can give me.
David
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%
Permutation test against the null hypothesis of independence
Number of randomization rounds: 1
P-value: 0,0879
I hope I kept my questions quite clear and someone is willing to help me
with these.
If I forgot any information please let me know.
Kind regards,
Simone
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or. Dept. of Anthropology
Stony Brook University 11794-4364
WWW: http://life.bio.sunysb.edu/morph/rohlf
P Please consider the environment before printing this email
From: marcelo cardillo [mailto:marcelo.cardi...@gmail.com]
Sent: Thursday, May 11, 2017 12:47 PM
To: MORPHMET &
ndmark Editor, but it seems like the download links
>> on the IDAV website are no longer functioning. I found an archived version
>> of the software online, but it constantly crashes when I import my data. Is
>> this the only free software that can be used to apply landmark points to
data. Is
>> this the only free software that can be used to apply landmark points to 3D
>> data?
>>
>> Thanks in advance!
>> - Grace
>>
>> --
>> MORPHMET may be accessed via its webpage at http://www.morphometrics.org
>> ---
>>
!
M
--
Dr.Marcelo Cardillo
IMHICIHU-CONICET-UBA
Saavedra 15, 5to piso cp (1083)
Teléfono: (011) 4953-8548 - Interno 212
Buenos Aires. Capital Federal. Argentina
http://conicet.academia.edu/MarceloCardillo
--
MORPHMET may be accessed via its webpage at http
n archived version
> of the software online, but it constantly crashes when I import my data. Is
> this the only free software that can be used to apply landmark points to 3D
> data?
>
> Thanks in advance!
> - Grace
>
> --
> MORPHMET may be accessed via its webpage at http://
data. Is
> this the only free software that can be used to apply landmark points to 3D
> data?
>
> Thanks in advance!
> - Grace
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Dear Carmelo,
Your answer was definitely helpful! I really appreciate it.
Best regards, Ioannis
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nu.
> I hope this helps.
> Best,
> Carmelo
>
>
> --
> Carmelo Fruciano
> Postdoctoral Fellow - Queensland University of Technology - Brisbane,
> Australia
> Honorary Fellow - University of Catania - Catania, Italy
> e-mail c.fruci...@unict.it
> http
Italy
e-mail c.fruci...@unict.it
http://www.fruciano.it/research/
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ology - Brisbane,
Australia
Honorary Fellow - University of Catania - Catania, Italy
e-mail c.fruci...@unict.it
http://www.fruciano.it/research/
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n find the source of that problem?
>
> Best regards,
> Alicja
>
> --
> MORPHMET may be accessed via its webpage at http://www.morphometrics.org
> ---
> You received this message because you are subscribed to the Google Groups
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Errors occurred in the reading process.
> The new dataset could not be created."
>
> I have tried to change the data manually but it does not work. Anyway, I
> have too many specimens to manage that in such a way. Do you possibly know
> where I can find the source of tha
, when I simply treated them as typical landmarks in
morphoj..
Please any help would be very welcome.
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l of animal ecology.
prstatistics.com
facebook.com/prstatistics/
twitter.com/PRstatistics
groups.google.com/d/forum/pr-statistics-post-course-forum
prstatistics.com/organiser/oliver-hooker/
3/1, 128 Brunswick Street
Glasgow
G1 1TF
+44 (0) 7966500340
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taly
e-mail c.fruci...@unict.it
http://www.fruciano.it/research/
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in morphoJ.
Thank you very much,
Aixa
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t
ked that I have Procrustes coordinates for 90
specimens, age categories for 90 specimens, and species designations
for 90 specimens. I've gotten this to work in an earlier version of
geomorph. Am I overlooking something here?
Many thanks,
Lawrence
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MORPHMET may be accessed via its webpage at ht
be particularly interested in knowing other imaging
repos that cannot be imported into Slicer with the methods described in these
tutorials. I will try to respond as soon as I can.
Hope this helps some.
M
From: Murat Maga [mailto:m...@uw.edu]
Sent: Wednesday, February 22, 2017 2:19 PM
To: morphmet
> I've gotten this to work in an earlier version of geomorph. Am I
> overlooking something here?
>
> Many thanks,
> Lawrence
>
> --
> MORPHMET may be accessed via its webpage at http://www.morphometrics.org
> ---
> You received this message because you are subscribed to the
r 90 specimens, and species designations for 90 specimens. I've
> gotten this to work in an earlier version of geomorph. Am I overlooking
> something here?
>
> Many thanks,
> Lawrence
>
> --
> MORPHMET may be accessed via its webpage at http://www.morphometrics.org
> &
checked that I have Procrustes coordinates for 90 specimens,
age categories for 90 specimens, and species designations for 90 specimens.
I've gotten this to work in an earlier version of geomorph. Am I
overlooking something here?
Many thanks,
Lawrence
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k.com/prstatistics/
twitter.com/PRstatistics
groups.google.com/d/forum/pr-statistics-post-course-forum
prstatistics.com/organiser/oliver-hooker/
3/1, 128 Brunswick Street
Glasgow
G1 1TF
+44 (0) 7966500340
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---
You rec
, see...
http://www.morphbank.net/
A search for "drosophila" brings up "31924 Images"
-ds
On 3/29/17 9:35 AM, Göran Arnqvist wrote:
A postdoc of mine asked me to send along the below request to morphmet -
any help would be appreciated! Please reply straight to her. /Göran
of this
species, v) an existing collaborative network with various socio-economic
partners that will allow a rapid and efficient transfer of knowledge.
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Brook University, planned for October 24th, 2017. She or he will
deliver a lecture that is appropriate for a broad audience, ranging from
the exact sciences to the humanities, concerning the morphometric
methodology, software, or findings for which the Rohlf Medal was awarded.
--
MORPHMET may
>
>
>
>
> On 16 Mar 2017, at 23:57, Damien Esquerre <esquerre.dam...@gmail.com>
> wrote:
>
> Hi Morphmet community,
> I would like advice on the best option for digitising landmarks and
> semi-landmarks on photographs on a Mac. I use TpsDig on windows which I
> like a
.@gmail.com> wrote:
>
> Hi Morphmet community,
> I would like advice on the best option for digitising landmarks and
> semi-landmarks on photographs on a Mac. I use TpsDig on windows which I like
> a lot but would like to avoid installing a virtual machine since now I don't
> have
Hi Morphmet community,
I would like advice on the best option for digitising landmarks and
semi-landmarks on photographs on a Mac. I use TpsDig on windows which I
like a lot but would like to avoid installing a virtual machine since now I
don't have access to Windows.
What the opinions
Torino - ITALY
Phone +39 011 670 4536
Fax +39 011 236 4536
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, Distinguished Professor, Emeritus. Ecology & Evolution
Research Professor, Anthropology
Stony Brook University
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"MORPHM
lt;https://urldefense.proofpoint.com/v2/url?u=https-3A__www.surveymonkey.com_r_anth-5Fanat=AwMFAg=2X_btuPRWkGwRX26NHIotw=BzjivF1QeBfI_3LA2VUN9ft9kB36GKxt8Ke21CMTTJU=h7MlXLHbchyUr5Jv-eaZZS-A47Ah1OfE0T-Iftj5bqw=C_Tur-c5imVt53_B5jqIFwdeE0PW_2ZLdyDcepQFpzM=>
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request you to forward this
mail to your
colleagues, research scholars and students as well as encourage them
to participate in the Conference.
With our very best regards.
Luciano Teresi
Valerio Varano
Paolo Piras
Paolo Emilio Puddu
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MORPHMET may be accessed via its webpage at http
Just a reminder. Survey ends March 8th.
Thanks for those who participated.
From: Murat Maga [mailto:m...@uw.edu]
Sent: Wednesday, February 22, 2017 2:19 PM
To: morphmet@morphometrics.org
Subject: [MORPHMET] Survey for 3D imaging and morphometrics workshop
Dear members,
If you are working
& Evolution
Research Professor, Anthropology
Stony Brook University
From: J Coelho [mailto:joaopedrocoe...@gmail.com]
Sent: Sunday, February 26, 2017 3:41 AM
To: MORPHMET <morphmet@morphometrics.org>
Subject: [MORPHMET] tpsDig2 and closed curves
Greetings morphometricians,
e
of closed curves??
Thanks in advance,
Best Regards,
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r-advr07/>
>
> 21. INTRODUCTION TO BAYESIAN HIERARCHICAL MODELLING #IBHM
> 29th Jan – 2nd Feb, Scotland, Dr. Andrew Parnell
>
> *http://www.prstatistics.com/course/introduction-to-bayesian-hierarchical-modelling-using-r-ibhm02/*
>
> <http://www.prstatistics.com/course/intro
University
Moesgård Allé 20
Building 4215, 137,
8270, Højbjerg,
Denmark.
www.archaeologicalmorphometrics.com
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To u
sity
From: Luis Ruedas [mailto:rue...@pdx.edu]
Sent: Tuesday, February 21, 2017 12:49 PM
To: morphmet@morphometrics.org
Subject: [MORPHMET] Problems visualizing curves across versions of tpsDig
I have been digitizing data from some 2D images on a computer where I had
loaded tpsDig 2.16
& Evolution
Research Professor, Anthropology
Stony Brook University
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cs
3/1
128 Brunswick Street
Glasgow
G1 1TF
+44 (0) 7966500340
-- Oliver Hooker PhD. PR statistics 3/1 128 Brunswick Street Glasgow G1 1TF
+44 (0) 7966500340 *www.prstatistics.com* <http://www.prstatistics.com/>
*www.prstatistics.com/organiser/oliver-hooker/*
<http://www.prstatistics.com/
(February 2018) #ANME
??th - ??th February, Wales, Dr Luca Borger, Dr. John Fieberg
23. AQUATIC TELEMENTRY DATA ANALYSIS USIR R (TBC) #ATDAR
-- Oliver Hooker PhD. PR statistics 3/1 128 Brunswick Street Glasgow G1 1TF
+44 (0) 7966500340 *www.prstatistics.com* <http://www.prstatistics.
, PST.
Feedback will be useful to identify the audience and sponsors for a potential a
short course or a workshop.
https://forms.office.com/Pages/ResponsePage.aspx?id=W9229i_wGkSZoBYqxQYL0lnYz8n5LvRInWGoz5_LAC1URTZOTzdKMllOM1EyVVFZSkI2MlBRVkpKUC4u
Best,
M
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From: Emma Sherratt <emma.sherr...@gmail.com>
Date: 21/02/2017 09:37 (GMT+10:00) To: marcos patricio
<marcos.patri...@gmail.com>, morphmet@morphometrics.org Subject: Re: [MORPHMET]
Help needed - Extract classifiers form ID String in Geomoprh or export complete
datasets from M
on the
bottom edge of the image in tpsDig. The file remains unchanged, with the
original curve coordinates.
Anyone know what may be going on? Help is welcome...
All the best,
Luis
--
Luis A. Ruedas, Ph.D.
Associate Professor of Biology
Portland State University
--
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rcos Patrício Macedo, M.Sc.
> Laboratório de Biologia Evolutiva,
> Departamento de Genética e Morfologia
> Universidade de Brasília, Brasília, DF, 70910-900, Brasil
> <http://www.zoo.unb.br/>
>
> --
> MORPHMET may be accessed via its webpage at http://www.morphometrics.org
> ---
&
or .xls file?
Kind regards,
--
Marcos Patrício Macedo, M.Sc.
Laboratório de Biologia Evolutiva,
Departamento de Genética e Morfologia
Universidade de Brasília, Brasília, DF, 70910-900, Brasil
<http://www.zoo.unb.br/>
--
MORPHMET may be accessed via its webpage at http://www.morphometrics.org
--
compiler version.
As always, let me know of any problems or suggestions for the tps software.
F. James Rohlf, Distinguished Professor, Emeritus. Ecology & Evolution
Research Professor, Anthropology
Stony Brook University
--
MORPHMET
rogram?
> >
> > Thanks,
> >
> > Terry Ritzman
> >
> >
> > Postdoctoral Research Associate
> > Department of Neuroscience
> > Washington University School of Medicine
> > terryritzman.com
> > primate-radiograph.com
> >
> >
>
; Terry Ritzman
>
>
> Postdoctoral Research Associate
> Department of Neuroscience
> Washington University School of Medicine
> terryritzman.com
> primate-radiograph.com
>
>
>
>
>
>
>
>
>
>
>
>
> --
>
> MORPHME
and
evolutionary rates. *Evolutionary Ecology Research*, 18: 123-167.
Best
Paolo
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ty of Technology - Brisbane,
Australia
Honorary Fellow - University of Catania - Catania, Italy
e-mail c.fruci...@unict.it
http://www.fruciano.it/research/
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them.
I know how to create a grid of the CVA with all my specimens, but not how to
create grids by classifiers.
Thanks
Geoffrey
PS: Scuse me for my english
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sn’t seem to honor the windows’ inherent font scaling, and the
> default fonts are too small. I have to use the magnifying glass and it gets
> tedious very quickly.
>
>
>
> M
>
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Is there a way to correctly scale font size in MorphoJ on high resolution
display?
It doesn’t seem to honor the windows’ inherent font scaling, and the default
fonts are too small. I have to use the magnifying glass and it gets tedious
very quickly.
M
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Rohlf, Distinguished Professor, Emeritus. Ecology & Evolution
Research Professor, Anthropology
Stony Brook University
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weekend, everyone!
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Dra. Alejandra Martínez Melo
Departamento de Paleontología
Instituto de Geología
Universidad Nacional Autónoma de México.
(55) 5622-4283 ext. 211
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oscience
> Washington University School of Medicine
> terryritzman.com
> primate-radiograph.com
>
>
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Sent from Mail for Windows 10
From: M. Viviana Toro Ibacache
Sent: Friday, 3 February 2017 9:27 PM
To: Kate Rusk
Cc: MORPHMET
Subject: Re: [MORPHMET] Procrustes ANOVA for FA Analysis
Hi Kate,
If I understood correctly, I am not sure that you can do a Procrustes
ANOVA-based FA test on a list
diograph.com <http://primate-radiograph.com/>
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Department of Ecology, Evolution, and Organismal Biology
Department of Statistics
Iowa State University
www.public.iastate.edu/~dcadams/<http://www.public.iastate.edu/~dcadams/>
phone: 515-294-3834
From: Pere Ibáñez [mailto:perei...@gmail.com]
Sent: Tuesday, January 31, 2017 5:34 AM
To: MO
Box 355065, Seattle, WA 98195-5065 USA
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placement has length zero
Any ideas of what is happening? I followed the exact same procedure with
other arrays of landmarks and it worked. There is probably something wrong
with this array, but I have no idea of what...
Thanks!
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ppreciated!
Thanks very much,
Kate
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