Hi Stefano

can you elaborate? Why do you suspect there is an error?

cheers
Bruce
On Mon, 11 May 2020, std...@virgilio.it wrote:


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Please, could you check the command line.
I suspect that an error is there.
Thanks.
Stefano

mri_binarize --i ThalamicNuclei.v10.T1.mgz --replace-only 8130   8133 --o
Left-Ventroposterior.mgz


      Il 30 aprile 2020 alle 18.51 "Douglas N. Greve"
      <dgr...@mgh.harvard.edu> ha scritto:

      You can use mri_binarize --i ThalamicNuclei.v10.T1.mgz
      --replace-only segid segidreplace ... --o newseg.mgz
      to create a new segmentation with merged segments, then using
      vol2subfield with the newseg seg as --sf

      On 4/29/2020 7:57 PM, std...@virgilio.it wrote:

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      Hi list,

      vol2subfield --i fmcpr.nii.gz --reg register.dof6.lta --sf
      ThalamicNuclei.v10.T1.mgz --stats stats.dat --avgwf
      avgwf.dat --avgwfvol avgwfvol.mgz --o f2subf.nii.gz

      extracts the time course from each thalamic subregions.

      If I would like to merge multiple regions (e.g. --id 8115
      --id 8116) and extract a single time course from them,
      which is the way?

      Thanks


      Stefano



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