Louise-Amélie Schmitt wrote: > Le 02/06/2011 21:39, Nate Coraor a écrit : > >Louise-Amélie Schmitt wrote: > >>>default_cluster_job_runner will remain for backwards compatibility, but > >>>we'll ship a sample job_conf.xml that runs everything locally by > >>>default. > >>> > >>>--nate > >>Haha, and I did that before realizing I could do just what I needed by > >>writing tool-specific pbs:// URLs at the end of the config file... I'm such > >>an idiot. > >Haha, okay, I don't think i even noticed since I was distracted by your > >implementation being a step in the way we want to go with it. > > > damn, I shouldn't have said anything :D > >>But I really like what you did of it and I have a couple of questions. > >> > >>Concerning the single-threaded tools, what would happen if the number of > >>threads set in the xml file was>1 ? > >It'd consume extra slots, but the tool itself would just run as usual. > > > So what about an attribute in the tool tag that would notify wether > the tool is actually multithreaded, so that this doesn't happen? > Something like multithreaded="true/false" ?
I'm not sure if it's something we need to enforce (who knows, maybe I have some reason for having a single-threaded tool reserve multiple slots), but I do think there should be some way for tool authors to make it known that their tool is multithreaded. --nate > >>Could it be possible to forbid a tool to run on a given node? > >Hrm. In PBS you could do it using node properties/neednodes or resource > >requirements. I'd have to think a bit about how to do this in a more > >general way in the XML. > > > >--nate > > > Ok thank you! :) > > L-A > >>Thanks, > >>L-A > >> > >> > >>>>Peter > >>>> > ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/