Thanks very much. This did in fact solve the issue. For those following the 
thread the "Rewrite" statements have to be added to 
/etc/apache2/sites-available/defaults.

Thanks
Again
Neil

-----Original Message-----
From: Carlos Borroto [mailto:carlos.borr...@gmail.com] 
Sent: Tuesday, 28 August 2012 6:14 AM
To: Burdett, Neil (ICT Centre, Herston - RBWH)
Cc: galaxy-user@lists.bx.psu.edu
Subject: Re: [galaxy-user] Installing galaxy with Apache ...

This thread my help you:
http://dev.list.galaxyproject.org/Running-Galaxy-behind-apache2-td4624545.html

On Thu, Aug 23, 2012 at 5:48 PM,  <neil.burd...@csiro.au> wrote:
> Hi Jelle,
>            I'm still having issues with Apache. I've moved
>
> RewriteEngine on
> RewriteRule ^/galaxy$ /galaxy/ [R]
> RewriteRule ^/galaxy/static/style/(.*) 
> /home/galaxy/galaxy-dist/static/june_2007_style/blue/$1 [L] 
> RewriteRule ^/galaxy/static/scripts/(.*) 
> /home/galaxy/galaxy-dist/static/scripts/packed/$1 [L] RewriteRule 
> ^/galaxy/static/(.*) /home/galaxy/galaxy-dist/static/$1 [L] 
> RewriteRule ^/galaxy/favicon.ico 
> /home/galaxy/galaxy-dist/static/favicon.ico [L] RewriteRule 
> ^/galaxy/robots.txt /home/galaxy/galaxy-dist/static/robots.txt [L] 
> RewriteRule ^/galaxy(.*) http://localhost:8080$1 [P]
>
> from /var/www/.htaccess to /etc/apache2/httpd.conf
>
> I still get a "404 Not found" error when trying to access galaxy 
> (http://140.253.78.44/galaxy )
>
> http://140.253.78.44 still gets the "It Works!" Apache default 
> index.html
>
> and http://140.253.78.44:8080 gets the galaxy page
>
> /var/log/apache2/error.log states...
>
> [Fri Aug 24 07:35:27 2012] [error] [client 140.253.78.44] File does 
> not exist: /var/www/favicon.ico [Fri Aug 24 07:36:25 2012] [error] 
> [client 140.253.78.44] File does not exist: /var/www/galaxy
>
> Now if I change httpd.conf and add the vitrtualHost tags to:
>
> ServerName localhost
> <VirtualHost *:80>
>   RewriteEngine on
>   RewriteRule ^/galaxy$ /galaxy/ [R]
>   RewriteRule ^/galaxy/static/style/(.*) 
> /home/galaxy/galaxy-dist/static/june_2007_style/blue/$1 [L]
>   RewriteRule ^/galaxy/static/scripts/(.*) 
> /home/galaxy/galaxy-dist/static/scripts/packed/$1 [L]
>   RewriteRule ^/galaxy/static/(.*) /home/galaxy/galaxy-dist/static/$1 [L]
>   RewriteRule ^/galaxy/favicon.ico 
> /home/galaxy/galaxy-dist/static/favicon.ico [L]
>   RewriteRule ^/galaxy/robots.txt /home/galaxy/galaxy-dist/static/robots.txt 
> [L]
>   RewriteRule ^/galaxy(.*) http://localhost:8080$1 [P] </VirtualHost>
>
> I now get a "403 Forbidden" error when trying to access 
> (http://140.253.78.44/galaxy ) You don't have permission to access /galaxy/ 
> on this server, and /var/log/apache2/error.log states..
>
> [Fri Aug 24 07:45:33 2012] [error] [client 140.253.78.44] attempt to 
> make remote request from mod_rewrite without proxy enabled: 
> proxy:http://localhost:8080/ [Fri Aug 24 07:45:34 2012] [error] 
> [client 140.253.78.44] File does not exist: /etc/apache2/htdocs
>
> Any help much appreciated
>
> Neil
> ________________________________________
> From: Jelle Scholtalbers [j.scholtalb...@gmail.com]
> Sent: Thursday, August 23, 2012 8:20 PM
> To: Burdett, Neil (ICT Centre, Herston - RBWH)
> Cc: galaxy-user@lists.bx.psu.edu
> Subject: Re: [galaxy-user] Installing galaxy with Apache ...
>
> Hi Neil,
>
> with your current apache configuration, you should probably see Galaxy 
> at http://yourip/galaxy This is due to your Rewriterule /galaxy and 
> for that you have also set proxy_prefix = /galaxy in your 
> universe_wsgi.ini
>
> You should probably remove the empty galaxy directory under /var/www 
> Furthermore, most of the time you will not need a directory with 777 
> in your apache web/documentroot..
>
> Cheers,
> Jelle
>
> On Thu, Aug 23, 2012 at 8:34 AM,  <neil.burd...@csiro.au> wrote:
>> Hi
>>    I've installed galaxy with the default settings and it works fine.
>>
>> On a new Ubuntu machine I am trying to get galaxy running with Apache. But I 
>> am having problems, I've followed the documentation.
>>
>> After installing Apache I can put my ip address into a browser and I 
>> get message saying Apache is working fine. It displays a message from 
>> /var/www/index.html
>>
>> Now when I start galaxy I was assuming I would get redirected to the galaxy 
>> welcome page, but this doesn't happen and it remains at /var/www/index.html. 
>> To view the welcome page I have to add ":8080" after the ip address. Is this 
>> still required? I thought that Apache would know to redirect to my 
>> distribution....What am I doing wrong?
>>
>> /etc/apache2/sites-available/default-ssl and 
>> /etc/apache2/sites-available/default look like this ...
>>
>>         DocumentRoot /var/www
>>         <Directory />
>>                 Options FollowSymLinks
>>                 AllowOverride None
>>         </Directory>
>>         <Directory /var/www/>
>>                 Options Indexes FollowSymLinks MultiViews
>>                 AllowOverride None
>>                 Order allow,deny
>>                 allow from all
>>         </Directory>
>>
>>  etc ...
>>
>> /var/www/.htaccess
>>
>> RewriteEngine on
>> RewriteRule ^/galaxy$ /galaxy/ [R]
>> RewriteRule ^/galaxy/static/style/(.*) 
>> /home/galaxy/galaxy-dist/static/june_2007_style/blue/$1 [L] 
>> RewriteRule ^/galaxy/static/scripts/(.*) 
>> /home/galaxy/galaxy-dist/static/scripts/packed/$1 [L] RewriteRule 
>> ^/galaxy/static/(.*) /home/galaxy/galaxy-dist/static/$1 [L] 
>> RewriteRule ^/galaxy/favicon.ico 
>> /home/galaxy/galaxy-dist/static/favicon.ico [L] RewriteRule 
>> ^/galaxy/robots.txt /home/galaxy/galaxy-dist/static/robots.txt [L] 
>> RewriteRule ^/galaxy(.*) http://localhost:8080$1 [P]
>>
>> I created an empty 'galaxy' directory with 777 permissions on it 
>> under /var/www
>>
>>
>> and universe_wsgi.ini
>>
>>
>> # Define the proxy-prefix filter.
>> [filter:proxy-prefix]
>> use = egg:PasteDeploy#prefix
>> prefix = /galaxy
>>
>> # ---- Galaxy 
>> ---------------------------------------------------------------
>>
>> # Configuration of the Galaxy application.
>>
>> [app:main]
>> filter-with = proxy-prefix
>> cookie_path = /galaxy
>>
>>
>> Thanks Neil
>>
>>
>> ___________________________________________________________
>> The Galaxy User list should be used for the discussion of Galaxy 
>> analysis and other features on the public server at usegalaxy.org.  
>> Please keep all replies on the list by using "reply all" in your mail 
>> client.  For discussion of local Galaxy instances and the Galaxy 
>> source code, please use the Galaxy Development list:
>>
>>   http://lists.bx.psu.edu/listinfo/galaxy-dev
>>
>> To manage your subscriptions to this and other Galaxy lists, please 
>> use the interface at:
>>
>>   http://lists.bx.psu.edu/
> ___________________________________________________________
> The Galaxy User list should be used for the discussion of Galaxy 
> analysis and other features on the public server at usegalaxy.org.  
> Please keep all replies on the list by using "reply all" in your mail 
> client.  For discussion of local Galaxy instances and the Galaxy 
> source code, please use the Galaxy Development list:
>
>   http://lists.bx.psu.edu/listinfo/galaxy-dev
>
> To manage your subscriptions to this and other Galaxy lists, please 
> use the interface at:
>
>   http://lists.bx.psu.edu/

___________________________________________________________
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at usegalaxy.org.  Please keep all replies on the list by
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use the Galaxy Development list:

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To manage your subscriptions to this and other Galaxy lists,
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