Hi Greg, Sorry to be such a pain but... Can you load the following custom track for me...the convention you suggested does appear to be working...hmmm
Thanks, bill On 8/8/11 11:03 AM, "Greg Roe" <[email protected]> wrote: >Hi Bill, > >The docs are a little vague I guess. The track name to be used there is >actually the main table name for the track. (I'll get this corrected in >the docs). So for "Human mRNAs", you should use "mrna". > >To get the names, when you're in the genome browser, hover the mouse >pointer over the track titles. The URL that appears for the tracks >always ends with a "&g=table_name" (e.g. &g=mrna). Use the names given >there. > >- >Greg > >On 8/8/11 9:56 AM, Bill Biggs wrote: >> Hi Greg, >> >> Wow, that was fast. >> >> Found this and, in fact, it has been very helpful:) >> My problem is that I can't seem to find track names that work when used >>in >> a browser hide track_name argumentŠ >> >> For example when working with the Human mRNAs track I tried the >>following >> >> browser hide Human mRNAs Does not cause the Human mRNAs track to >> be >>hidden >> >> Is there still something wrong with this argument? >> >> Thanks, >> bill >> >> >> On 8/8/11 9:42 AM, "Greg Roe"<[email protected]> wrote: >> >>> Hi Bill, >>> >>> You're on the right track (no pun intended). Please see the Browser >>> Lines section of our custom track help docs: >>> http://genome.ucsc.edu/goldenPath/help/customTrack.html#BROWSER >>> >>> That'll have all the information you need. Specifically, the "hide" and >>> "hide all" attributes. >>> >>> - >>> Greg Roe >>> UCSC Genome Bioinformatics Group >>> >>> >>> On 8/8/11 8:09 AM, Bill Biggs wrote: >>>> Hi Team UCSC, >>>> >>>> A really stupid question for youŠ >>>> >>>> We have loaded a series of custom tracks into the UCSC Genome Browser >>>> and would now like to specify the general tracks that display below >>>>the >>>> custom tracks. >>>> Is this possible? We have tried inserting various commands at the >>>> start of the custom track file (e.g. browser hide track_name or >>>>browser >>>> pack track_name) with no luck. >>>> >>>> For example, if we wanted to hide the Human mRNAs track what would be >>>> the appropriate command? >>>> >>>> Thanks, >>>> bill >>>> >>>> >>>>_______________________________________________________________________ >>>>__ >>>> ___________________________________ >>>> William Biggs, Ph.D. | Director, Translational Sciences | Aviir >>>> Clinical Services Laboratory >>>> 9805 Research Drive | Irvine, CA 92618 | Tel: 949.398.6313| Cell: >>>> 949.547.2365 | >>>> >>>> Confidentiality Notice: This communication may contain confidential >>>> and/or privileged information. If you are not the intended >>>> recipient, please return this message to the sender and delete all >>>> copies hereof without disclosing or using the information in this >>>>email. >>>> _______________________________________________ >>>> Genome maillist - [email protected] >>>> https://lists.soe.ucsc.edu/mailman/listinfo/genome
browser position chr1:116243862-116311162 browser pack omimAvSnp browser pack knownGene browser hide mrna browser hide intronEst browser show wgEncodeReg browser hide cons46way browser hide cons46way.align.vis track name="Test" description="Track Control Testing" colorByStrand="255,0,0 0,0,255" chr1 116243862 116244047 CASQ2.11 0 - chr1 116245542 116245616 CASQ2.10 0 - chr1 116247813 116247913 CASQ2.09 0 - chr1 116260461 116260515 CASQ2.08 0 - chr1 116268129 116268174 CASQ2.07 0 - chr1 116269613 116269743 CASQ2.06 0 - chr1 116275522 116275595 CASQ2.05 0 - chr1 116280845 116280956 CASQ2.04 0 - chr1 116283349 116283449 CASQ2.03 0 - chr1 116287449 116287533 CASQ2.02 0 - chr1 116310929 116311162 CASQ2.01 0 -
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