I just tried it both ways and got identical results. You might try resetting the browser before uploading, just to make sure you're working with a clean slate. You can reset it from the top box on gateway page here: http://genome.ucsc.edu/cgi-bin/hgGateway
Also, if you edited the file, make sure you save it before uploading. - Greg On 8/8/11 2:45 PM, Bill Biggs wrote: > Hi Greg, > > No worries…noobs like me have to be a royal pain in the arse… > > One more question…promise > > When I copy and paste the text in the attached file into "Paste URLs > or data" window it comes out perfect… > > But when the file is uploaded then the display look like below…any ideas? > > > On 8/8/11 2:35 PM, "Greg Roe" <[email protected] > <mailto:[email protected]>> wrote: > > My apologies...it looks like you did have one display attribute per > line. For some reason when I opened in my text editor the first time > some of the line breaks disappeared (maybe you saved in rich text?). > > But yes, you still only need one line per attribute, and list the > track > names separated by a space as below. > > - Greg > > On 8/8/11 2:23 PM, Greg Roe wrote: > > You have some formatting wrong. You have all the display > attributes on > one line and aren't listing multiple track names separated by > a single > space. > > Note from the help docs, it says: > - "Each *line* defines *one* display attribute." > - "hide<track_name(s)> - Hides the listed tracks. > *Multiple track > names should be space-separated*." > > So you want.... > > browser position chr1:116243862-116311162 > browser pack omimAvSnp knownGene > browser hide mrna intronEst cons46way cons46way.align.vis > browser show wgEncodeReg > track name="Test" description="Track Control Testing" > colorByStrand="255,0,0 0,0,255" > .... > > > - > Greg > > > > On 8/8/11 1:09 PM, Bill Biggs wrote: > > Hi Greg, > > Sorry to be such a pain but... > Can you load the following custom track for me...the > convention you > suggested does appear to be working...hmmm > > Thanks, > bill > > > On 8/8/11 11:03 AM, "Greg Roe"<[email protected] > <mailto:[email protected]>> wrote: > > Hi Bill, > > The docs are a little vague I guess. The track name to > be used there is > actually the main table name for the track. (I'll get > this corrected in > the docs). So for "Human mRNAs", you should use "mrna". > > To get the names, when you're in the genome browser, > hover the mouse > pointer over the track titles. The URL that appears > for the tracks > always ends with a "&g=table_name" (e.g.&g=mrna). Use > the names given > there. > > - > Greg > > On 8/8/11 9:56 AM, Bill Biggs wrote: > > Hi Greg, > > Wow, that was fast. > > Found this and, in fact, it has been very helpful:) > My problem is that I can't seem to find track > names that work when used > in > a browser hide track_name argumentŠ > > For example when working with the Human mRNAs > track I tried the > following > > browser hide Human mRNAsDoes not cause the Human > mRNAs track to be > hidden > > Is there still something wrong with this argument? > > Thanks, > bill > > > On 8/8/11 9:42 AM, "Greg Roe"<[email protected] > <mailto:[email protected]>> wrote: > > Hi Bill, > > You're on the right track (no pun intended). > Please see the Browser > Lines section of our custom track help docs: > > http://genome.ucsc.edu/goldenPath/help/customTrack.html#BROWSER > > That'll have all the information you need. > Specifically, the "hide" and > "hide all" attributes. > > - > Greg Roe > UCSC Genome Bioinformatics Group > > > On 8/8/11 8:09 AM, Bill Biggs wrote: > > Hi Team UCSC, > > A really stupid question for youŠ > > We have loaded a series of custom tracks > into the UCSC Genome Browser > and would now like to specify the general > tracks that display below > the > custom tracks. > Is this possible? We have tried inserting > various commands at the > start of the custom track file (e.g. > browser hide track_name or > browser > pack track_name) with no luck. > > For example, if we wanted to hide the > Human mRNAs track what would be > the appropriate command? > > Thanks, > bill > > > > _______________________________________________________________________ > __ > ___________________________________ > William Biggs, Ph.D. | Director, > Translational Sciences | Aviir > Clinical Services Laboratory > 9805 Research Drive | Irvine, CA 92618 | > Tel: 949.398.6313| Cell: > 949.547.2365 | > > Confidentiality Notice: This > communication may contain confidential > and/or privileged information. If you are > not the intended > recipient, please return this message to > the sender and delete all > copies hereof without disclosing or using > the information in this > email. > _______________________________________________ > Genome maillist - [email protected] > <mailto:[email protected]> > https://lists.soe.ucsc.edu/mailman/listinfo/genome > > _______________________________________________ > Genome maillist - [email protected] > <mailto:[email protected]> > https://lists.soe.ucsc.edu/mailman/listinfo/genome > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
