My apologies...it looks like you did have one display attribute per line. For some reason when I opened in my text editor the first time some of the line breaks disappeared (maybe you saved in rich text?).
But yes, you still only need one line per attribute, and list the track names separated by a space as below. - Greg On 8/8/11 2:23 PM, Greg Roe wrote: > You have some formatting wrong. You have all the display attributes on > one line and aren't listing multiple track names separated by a single > space. > > Note from the help docs, it says: > - "Each *line* defines *one* display attribute." > - "hide<track_name(s)> - Hides the listed tracks. *Multiple track > names should be space-separated*." > > So you want.... > > browser position chr1:116243862-116311162 > browser pack omimAvSnp knownGene > browser hide mrna intronEst cons46way cons46way.align.vis > browser show wgEncodeReg > track name="Test" description="Track Control Testing" > colorByStrand="255,0,0 0,0,255" > .... > > > - > Greg > > > > On 8/8/11 1:09 PM, Bill Biggs wrote: >> Hi Greg, >> >> Sorry to be such a pain but... >> Can you load the following custom track for me...the convention you >> suggested does appear to be working...hmmm >> >> Thanks, >> bill >> >> >> On 8/8/11 11:03 AM, "Greg Roe"<[email protected]> wrote: >> >>> Hi Bill, >>> >>> The docs are a little vague I guess. The track name to be used there is >>> actually the main table name for the track. (I'll get this corrected in >>> the docs). So for "Human mRNAs", you should use "mrna". >>> >>> To get the names, when you're in the genome browser, hover the mouse >>> pointer over the track titles. The URL that appears for the tracks >>> always ends with a "&g=table_name" (e.g.&g=mrna). Use the names given >>> there. >>> >>> - >>> Greg >>> >>> On 8/8/11 9:56 AM, Bill Biggs wrote: >>>> Hi Greg, >>>> >>>> Wow, that was fast. >>>> >>>> Found this and, in fact, it has been very helpful:) >>>> My problem is that I can't seem to find track names that work when used >>>> in >>>> a browser hide track_name argumentŠ >>>> >>>> For example when working with the Human mRNAs track I tried the >>>> following >>>> >>>> browser hide Human mRNAs Does not cause the Human mRNAs track to >>>> be >>>> hidden >>>> >>>> Is there still something wrong with this argument? >>>> >>>> Thanks, >>>> bill >>>> >>>> >>>> On 8/8/11 9:42 AM, "Greg Roe"<[email protected]> wrote: >>>> >>>>> Hi Bill, >>>>> >>>>> You're on the right track (no pun intended). Please see the Browser >>>>> Lines section of our custom track help docs: >>>>> http://genome.ucsc.edu/goldenPath/help/customTrack.html#BROWSER >>>>> >>>>> That'll have all the information you need. Specifically, the "hide" and >>>>> "hide all" attributes. >>>>> >>>>> - >>>>> Greg Roe >>>>> UCSC Genome Bioinformatics Group >>>>> >>>>> >>>>> On 8/8/11 8:09 AM, Bill Biggs wrote: >>>>>> Hi Team UCSC, >>>>>> >>>>>> A really stupid question for youŠ >>>>>> >>>>>> We have loaded a series of custom tracks into the UCSC Genome Browser >>>>>> and would now like to specify the general tracks that display below >>>>>> the >>>>>> custom tracks. >>>>>> Is this possible? We have tried inserting various commands at the >>>>>> start of the custom track file (e.g. browser hide track_name or >>>>>> browser >>>>>> pack track_name) with no luck. >>>>>> >>>>>> For example, if we wanted to hide the Human mRNAs track what would be >>>>>> the appropriate command? >>>>>> >>>>>> Thanks, >>>>>> bill >>>>>> >>>>>> >>>>>> _______________________________________________________________________ >>>>>> __ >>>>>> ___________________________________ >>>>>> William Biggs, Ph.D. | Director, Translational Sciences | Aviir >>>>>> Clinical Services Laboratory >>>>>> 9805 Research Drive | Irvine, CA 92618 | Tel: 949.398.6313| Cell: >>>>>> 949.547.2365 | >>>>>> >>>>>> Confidentiality Notice: This communication may contain confidential >>>>>> and/or privileged information. If you are not the intended >>>>>> recipient, please return this message to the sender and delete all >>>>>> copies hereof without disclosing or using the information in this >>>>>> email. >>>>>> _______________________________________________ >>>>>> Genome maillist - [email protected] >>>>>> https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
