Of course.
On 8/8/11 4:11 PM, Bill Biggs wrote: > Hi Greg, > > Okay figured it out…too stupid really…just added .txt suffix to file name > > Can I ask another OMIM related question? > > Thanks, > bill > > > From: Greg Roe <[email protected] <mailto:[email protected]>> > Date: Mon, 8 Aug 2011 17:18:36 -0500 > To: William Biggs <[email protected] <mailto:[email protected]>> > Cc: "[email protected] <mailto:[email protected]>" > <[email protected] <mailto:[email protected]>> > Subject: Re: [Genome] really stupid question > > I just tried it both ways and got identical results. You might try > resetting the browser before uploading, just to make sure you're > working with a clean slate. You can reset it from the top box on > gateway page here: http://genome.ucsc.edu/cgi-bin/hgGateway > > Also, if you edited the file, make sure you save it before uploading. > > - Greg > > > On 8/8/11 2:45 PM, Bill Biggs wrote: >> Hi Greg, >> >> No worries…noobs like me have to be a royal pain in the arse… >> >> One more question…promise >> >> When I copy and paste the text in the attached file into "Paste URLs >> or data" window it comes out perfect… >> >> But when the file is uploaded then the display look like below…any ideas? >> >> >> On 8/8/11 2:35 PM, "Greg Roe" <[email protected] >> <mailto:[email protected]>> wrote: >> >> My apologies...it looks like you did have one display attribute per >> line. For some reason when I opened in my text editor the first time >> some of the line breaks disappeared (maybe you saved in rich text?). >> >> But yes, you still only need one line per attribute, and list the >> track >> names separated by a space as below. >> >> - Greg >> >> On 8/8/11 2:23 PM, Greg Roe wrote: >> >> You have some formatting wrong. You have all the display >> attributes on >> one line and aren't listing multiple track names separated by >> a single >> space. >> >> Note from the help docs, it says: >> - "Each *line* defines *one* display attribute." >> - "hide<track_name(s)> - Hides the listed tracks. >> *Multiple track >> names should be space-separated*." >> >> So you want.... >> >> browser position chr1:116243862-116311162 >> browser pack omimAvSnp knownGene >> browser hide mrna intronEst cons46way cons46way.align.vis >> browser show wgEncodeReg >> track name="Test" description="Track Control Testing" >> colorByStrand="255,0,0 0,0,255" >> .... >> >> >> - >> Greg >> >> >> >> On 8/8/11 1:09 PM, Bill Biggs wrote: >> >> Hi Greg, >> >> Sorry to be such a pain but... >> Can you load the following custom track for me...the >> convention you >> suggested does appear to be working...hmmm >> >> Thanks, >> bill >> >> >> On 8/8/11 11:03 AM, "Greg Roe"<[email protected] >> <mailto:[email protected]>> wrote: >> >> Hi Bill, >> >> The docs are a little vague I guess. The track name >> to be used there is >> actually the main table name for the track. (I'll get >> this corrected in >> the docs). So for "Human mRNAs", you should use "mrna". >> >> To get the names, when you're in the genome browser, >> hover the mouse >> pointer over the track titles. The URL that appears >> for the tracks >> always ends with a "&g=table_name" >> (e.g.&g=mrna). Use the names given >> there. >> >> - >> Greg >> >> On 8/8/11 9:56 AM, Bill Biggs wrote: >> >> Hi Greg, >> >> Wow, that was fast. >> >> Found this and, in fact, it has been very helpful:) >> My problem is that I can't seem to find track >> names that work when used >> in >> a browser hide track_name argumentŠ >> >> For example when working with the Human mRNAs >> track I tried the >> following >> >> browser hide Human mRNAsDoes not cause the Human >> mRNAs track to be >> hidden >> >> Is there still something wrong with this argument? >> >> Thanks, >> bill >> >> >> On 8/8/11 9:42 AM, "Greg Roe"<[email protected] >> <mailto:[email protected]>> wrote: >> >> Hi Bill, >> >> You're on the right track (no pun intended). >> Please see the Browser >> Lines section of our custom track help docs: >> >> http://genome.ucsc.edu/goldenPath/help/customTrack.html#BROWSER >> >> That'll have all the information you need. >> Specifically, the "hide" and >> "hide all" attributes. >> >> - >> Greg Roe >> UCSC Genome Bioinformatics Group >> >> >> On 8/8/11 8:09 AM, Bill Biggs wrote: >> >> Hi Team UCSC, >> >> A really stupid question for youŠ >> >> We have loaded a series of custom tracks >> into the UCSC Genome Browser >> and would now like to specify the general >> tracks that display below >> the >> custom tracks. >> Is this possible? We have tried >> inserting various commands at the >> start of the custom track file (e.g. >> browser hide track_name or >> browser >> pack track_name) with no luck. >> >> For example, if we wanted to hide the >> Human mRNAs track what would be >> the appropriate command? >> >> Thanks, >> bill >> >> >> >> _______________________________________________________________________ >> __ >> ___________________________________ >> William Biggs, Ph.D. | Director, >> Translational Sciences | Aviir >> Clinical Services Laboratory >> 9805 Research Drive | Irvine, CA 92618 | >> Tel: 949.398.6313| Cell: >> 949.547.2365 | >> >> Confidentiality Notice: This >> communication may contain confidential >> and/or privileged information. If you are >> not the intended >> recipient, please return this message to >> the sender and delete all >> copies hereof without disclosing or using >> the information in this >> email. >> _______________________________________________ >> Genome maillist - [email protected] >> <mailto:[email protected]> >> >> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> >> _______________________________________________ >> Genome maillist - [email protected] >> <mailto:[email protected]> >> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> >> _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
