Wow.   I find it hard to believe that my Stereochemistry page did not behave 
properly that long ago.  We are about to leave town so I do not have time to 
look at this for another week or so.  But it would be interesting to have you 
test the following URL with an old version of Firefox:

www.saintmarys.edu/~pbays/Stereochemistery.html

Choose option 3.   The others use the signed applet at the moment.

If this is the case, then things point to jmol or Java 1.6, I think.  Is it 
possible to checK a page out with an old version of jmol and an old version of 
firefox?  Snow Leopard could also be the culprit.  I note that Bob is running 
10.5, not 10.6 and that he does not observe the issue.

All of the Mozilla browsers use the Java Embedding Plugin to enable java 
applets.  Disabling that kills jmol altogether.  That has not been updated in 
awhile and I am wondering if that is an issue.   I have written the author but 
not received a response.

I have also confirmed the Firfox 4.0b1 throws the jmol.js error, but does load 
chloropyll, even when it is in Java Cache.  I will continue to watch the beta 
releases to see when they institute something that kills it.

Phil

On Jul 26, 2010, at 9:55 AM, Jeff Hansen wrote:

> Ok.  I'm not sure this will add any helpful info, but this is what I tested 
> this morning on Mac OS X 10.6.4 with Firefox 3.6.8 and Java 1.6.0_20.
> 
> Went to Java Preferences.app and cleared the cache.  Started up Firefox and 
> loaded NT1.  Clicked the Load Chlorophyll button.  Worked fine.  Closed 
> Firefox and reopened it.  Loaded NT1 and clicked the button.  Now chlorophyll 
> doesn't load (file access error).  Went to Java Preferences and cleared the 
> cache.  Reloaded NT1.  Still doesn't work.  Closed Firefox, reopened it, and 
> loaded NT1.  Now it works.  Reloaded NT1, still works.  As long as I keep the 
> browser open and reload the page or open it in a new tab, it works.  As soon 
> as I close Firefox and restart it, it doesn't work unless the cache has first 
> been cleared.  When the chlorophyll is not loading by the button, it loads 
> from the console as Phil has already noted.  NT3 works fine in all situations.
> 
> I downloaded Firefox 3.6.7, 3.6.6, 3.5.11, 3.5.10, and 3.0.19 and observed 
> the same behavior with all of them.
> 

J. Philip Bays
Professor of Chemistry
Department of Chemistry and Physics
Saint Mary's College
Notre Dame, IN 46556
(574) 284-4663
[email protected]




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