Unfortunately, that did not seem to work. Here are the last few lines of the terminal output and I've attached the numpy log.
[singular-4.1.1p2.p0] real 28m38.843s [singular-4.1.1p2.p0] user 24m18.545s [singular-4.1.1p2.p0] sys 3m53.423s [singular-4.1.1p2.p0] Copying package files from temporary location /Users/trevorkarn/Applications/sage/local/var/tmp/sage/build/singular-4.1.1p2.p0/inst to /Users/trevorkarn/Applications/sage/local [singular-4.1.1p2.p0] Successfully installed singular-4.1.1p2.p0 [singular-4.1.1p2.p0] Deleting temporary build directory [singular-4.1.1p2.p0] /Users/trevorkarn/Applications/sage/local/var/tmp/sage/build/singular-4.1.1p2.p0 [singular-4.1.1p2.p0] Finished installing singular-4.1.1p2.p0 make[2]: *** [all-build] Error 2 real 182m14.796s user 355m33.883s sys 72m32.388s *************************************************************** Error building Sage. The following package(s) may have failed to build (not necessarily during this run of 'make all-build'): * package: numpy-1.19.4 last build time: Feb 8 19:48 log file: /Users/trevorkarn/Applications/sage/logs/pkgs/numpy-1.19.4.log build directory: /Users/trevorkarn/Applications/sage/local/var/tmp/sage/build/numpy-1.19.4 It is safe to delete any log files and build directories, but they contain information that is helpful for debugging build problems. WARNING: If you now run 'make' again, the build directory of the same version of the package will, by default, be deleted. Set the environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. make[1]: *** [all-build] Error 1 make: *** [build] Error 2 trevorkarn@Trevors-MacBook-Air sage % Best Regards, Trevor Karn On Mon, Feb 8, 2021 at 1:56 PM Zachary Scherr <[email protected]> wrote: > yea, something seems messed up. For example, the numpy problem was fixed > on beta 6 and should still be fixed in beta 7. It looks like somehow you > have old files hanging around which are causing problems. Hopefully make > distclean will clean everything and let you start fresh. > > On Monday, February 8, 2021 at 2:25:16 PM UTC-5 Trevor Karn wrote: > >> I must have typed it wrong. The second option you gave failed on numpy, >> but I tried the first option again, and it is compiling. >> >> Best Regards, >> >> Trevor Karn >> >> >> On Mon, Feb 8, 2021 at 11:31 AM Zachary Scherr <[email protected]> wrote: >> >>> Are you sure you typed it correctly? Maybe try running >>> >>> ./bootstrap >>> >>> to make sure that the make targets are in order. >>> >>> On Monday, February 8, 2021 at 12:27:01 PM UTC-5 Trevor Karn wrote: >>> >>>> I tried make distclean and got an error “make: *** No rule to make >>>> target ‘distclean’. Stop.” >>>> >>>> So I tried your second suggestion and it seems to be working so far, >>>> but it is still compiling. >>>> >>>> On Mon, Feb 8, 2021 at 10:29 AM Zachary Scherr <[email protected]> >>>> wrote: >>>> >>>>> Probably the thing to try would be: >>>>> >>>>> make distclean >>>>> >>>>> and then you can build from scratch via: >>>>> >>>>> ./bootstrap >>>>> source .homebrew-build-env >>>>> ./configure >>>>> make -j4 build >>>>> >>>>> But if you want to try cleaning wheel first before starting from >>>>> scratch, you could just try >>>>> >>>>> make wheel-clean >>>>> make -j4 build >>>>> >>>>> but it might be better to clean everything and start from scratch. >>>>> >>>>> On Monday, February 8, 2021 at 10:59:05 AM UTC-5 Trevor Karn wrote: >>>>> >>>>>> I do not see pep425tags.py in that directory. >>>>>> >>>>>> trevorkarn@Trevors-MacBook-Air sage % cd >>>>>> /Users/trevorkarn/Applications/sage/local/lib/python3.9/site-packages/wheel/ >>>>>> >>>>>> trevorkarn@Trevors-MacBook-Air wheel % ls >>>>>> >>>>>> __init__.py __pycache__ cli metadata.py util.py wheelfile.py >>>>>> >>>>>> __main__.py bdist_wheel.py macosx_libfile.py pkginfo.py vendored >>>>>> >>>>>> Is there a way to clean the build environment? >>>>>> >>>>>> Best Regards, >>>>>> >>>>>> Trevor Karn >>>>>> >>>>>> >>>>>> On Mon, Feb 8, 2021 at 9:54 AM Dima Pasechnik <[email protected]> >>>>>> wrote: >>>>>> >>>>>>> the only explanation for pep425tags.py would be an unclean build >>>>>>> environment - e.g. weird env vars set, or strange stuff in PATH. >>>>>>> >>>>>>> On Mon, Feb 8, 2021 at 3:51 PM Zachary Scherr <[email protected]> >>>>>>> wrote: >>>>>>> > >>>>>>> > and do you see that pep425tags.py file in that directory? >>>>>>> > >>>>>>> > On Monday, February 8, 2021 at 10:21:09 AM UTC-5 Trevor Karn wrote: >>>>>>> >> >>>>>>> >> The only contents of the file you pointed me towards are >>>>>>> >> >>>>>>> >> __version__ = '0.36.2' >>>>>>> >> >>>>>>> >> Best Regards, >>>>>>> >> >>>>>>> >> Trevor Karn >>>>>>> >> >>>>>>> >> >>>>>>> >> On Mon, Feb 8, 2021 at 9:09 AM Zachary Scherr <[email protected]> >>>>>>> wrote: >>>>>>> >>> >>>>>>> >>> I really don't understand. The Cython log file shows that the >>>>>>> problem is in >>>>>>> >>> >>>>>>> >>> >>>>>>> /Users/trevorkarn/Applications/sage/local/lib/python3.9/site-packages/wheel/pep425tags.py >>>>>>> >>> >>>>>>> >>> I could be mistaken, but I don't think pep425tags.py has been a >>>>>>> part of the wheel package for a while now. Certainly when I looked at >>>>>>> wheel on my sage there was no such file. >>>>>>> >>> >>>>>>> >>> Can you go to your >>>>>>> "/Users/trevorkarn/Applications/sage/local/lib/python3.9/site-packages/wheel/" >>>>>>> directory and take a look at __init__.py. Does the version say 0.36.2? >>>>>>> >>> >>>>>>> >>> On Monday, February 8, 2021 at 9:32:20 AM UTC-5 Trevor Karn >>>>>>> wrote: >>>>>>> >>>> >>>>>>> >>>> >>>>>>> >>>> Here is what I get. It seems like it is the same as yours? >>>>>>> >>>> >>>>>>> >>>> >>>>>>> >>>> trevorkarn@Trevors-MacBook-Air sage % brew info python3 >>>>>>> >>>> >>>>>>> >>>> [email protected]: stable 3.9.1 >>>>>>> >>>> >>>>>>> >>>> Interpreted, interactive, object-oriented programming language >>>>>>> >>>> >>>>>>> >>>> https://www.python.org/ >>>>>>> >>>> >>>>>>> >>>> /usr/local/Cellar/[email protected]/3.9.1_8 (8,665 files, 129.4MB) * >>>>>>> >>>> >>>>>>> >>>> Built from source on 2021-02-05 at 16:39:31 >>>>>>> >>>> >>>>>>> >>>> From: >>>>>>> https://github.com/Homebrew/homebrew-core/blob/HEAD/Formula/[email protected] >>>>>>> >>>> >>>>>>> >>>> License: Python-2.0 >>>>>>> >>>> >>>>>>> >>>> ==> Dependencies >>>>>>> >>>> >>>>>>> >>>> Build: pkg-config ✔ >>>>>>> >>>> >>>>>>> >>>> Required: gdbm ✔, [email protected] ✔, readline ✔, sqlite ✔, tcl-tk >>>>>>> ✔, xz ✔ >>>>>>> >>>> >>>>>>> >>>> ==> Caveats >>>>>>> >>>> >>>>>>> >>>> Python has been installed as >>>>>>> >>>> >>>>>>> >>>> /usr/local/bin/python3 >>>>>>> >>>> >>>>>>> >>>> >>>>>>> >>>> Unversioned symlinks `python`, `python-config`, `pip` etc. >>>>>>> pointing to >>>>>>> >>>> >>>>>>> >>>> `python3`, `python3-config`, `pip3` etc., respectively, have >>>>>>> been installed into >>>>>>> >>>> >>>>>>> >>>> /usr/local/opt/[email protected]/libexec/bin >>>>>>> >>>> >>>>>>> >>>> >>>>>>> >>>> You can install Python packages with >>>>>>> >>>> >>>>>>> >>>> pip3 install <package> >>>>>>> >>>> >>>>>>> >>>> They will install into the site-package directory >>>>>>> >>>> >>>>>>> >>>> /usr/local/lib/python3.9/site-packages >>>>>>> >>>> >>>>>>> >>>> >>>>>>> >>>> See: https://docs.brew.sh/Homebrew-and-Python >>>>>>> >>>> >>>>>>> >>>> ==> Analytics >>>>>>> >>>> >>>>>>> >>>> install: 755,419 (30 days), 2,396,024 (90 days), 2,995,387 (365 >>>>>>> days) >>>>>>> >>>> >>>>>>> >>>> install-on-request: 244,063 (30 days), 714,665 (90 days), >>>>>>> 799,812 (365 days) >>>>>>> >>>> >>>>>>> >>>> build-error: 0 (30 days) >>>>>>> >>>> >>>>>>> >>>> >>>>>>> >>>> Best Regards, >>>>>>> >>>> >>>>>>> >>>> Trevor Karn >>>>>>> >>>> >>>>>>> >>>> >>>>>>> >>>> On Mon, Feb 8, 2021 at 8:17 AM Dima Pasechnik <[email protected]> >>>>>>> wrote: >>>>>>> >>>>> >>>>>>> >>>>> Could it be that you need to update your Homebrew (?) python3 >>>>>>> package? >>>>>>> >>>>> What version do you have now? >>>>>>> >>>>> E.g. on a box where the latest Sage builds I have >>>>>>> >>>>> >>>>>>> >>>>> % brew info python3 >>>>>>> >>>>> >>>>>>> >>>>> [email protected]: stable 3.9.1 (bottled) >>>>>>> >>>>> Interpreted, interactive, object-oriented programming language >>>>>>> >>>>> https://www.python.org/ >>>>>>> >>>>> /usr/local/Cellar/[email protected]/3.9.1_8 (4,057 files, 67.8MB) * >>>>>>> >>>>> Poured from bottle on 2021-02-06 at 10:13:24 >>>>>>> >>>>> From: >>>>>>> https://github.com/Homebrew/homebrew-core/blob/HEAD/Formula/[email protected] >>>>>>> >>>>> >>>>>>> >>>>> >>>>>>> >>>>> On Mon, Feb 8, 2021 at 1:53 PM Trevor Karn < >>>>>>> [email protected]> wrote: >>>>>>> >>>>> > >>>>>>> >>>>> > Ah I see, thanks for explaining. >>>>>>> >>>>> > >>>>>>> >>>>> > Here is my top-level config.log. >>>>>>> >>>>> > >>>>>>> >>>>> > Best Regards, >>>>>>> >>>>> > >>>>>>> >>>>> > Trevor Karn >>>>>>> >>>>> > >>>>>>> >>>>> > >>>>>>> >>>>> > On Mon, Feb 8, 2021 at 7:09 AM Dima Pasechnik < >>>>>>> [email protected]> wrote: >>>>>>> >>>>> >> >>>>>>> >>>>> >> >>>>>>> >>>>> >> >>>>>>> >>>>> >> On Mon, 8 Feb 2021, 13:02 Trevor Karn, <[email protected]> >>>>>>> wrote: >>>>>>> >>>>> >>> >>>>>>> >>>>> >>> Thanks for sending that link. I am confused though, >>>>>>> because it says a fix was issued. Does that mean it should work now? >>>>>>> >>>>> >> >>>>>>> >>>>> >> >>>>>>> >>>>> >> sorry, I was not clear. What I meant to say that it appears >>>>>>> to be a well-known issue in the Python@macOS universe, >>>>>>> >>>>> >> and lately all seems to be OK with Sage. >>>>>>> >>>>> >> >>>>>>> >>>>> >> To figure out exactly goes wrong in your case, we need to >>>>>>> know where Python3 used in Sage is coming from. >>>>>>> >>>>> >> Please post the top-level config.log >>>>>>> >>>>> >> >>>>>>> >>>>> >> >>>>>>> >>>>> >>> >>>>>>> >>>>> >>> And yes, I am on the most recent develop branch >>>>>>> >>>>> >>> >>>>>>> >>>>> >>> On Mon, Feb 8, 2021 at 5:42 AM Dima Pasechnik < >>>>>>> [email protected]> wrote: >>>>>>> >>>>> >>>> >>>>>>> >>>>> >>>> This seems to be well-known issue, see e.g >>>>>>> >>>>> >>>> https://github.com/pypa/virtualenv/issues/2027 >>>>>>> >>>>> >>>> >>>>>>> >>>>> >>>> Are you on the most recent develop branch (9.3.beta7)? >>>>>>> >>>>> >>>> >>>>>>> >>>>> >>>> On Mon, Feb 8, 2021 at 9:20 AM Trevor Karn < >>>>>>> [email protected]> wrote: >>>>>>> >>>>> >>>> > >>>>>>> >>>>> >>>> > Hi, >>>>>>> >>>>> >>>> > >>>>>>> >>>>> >>>> > I'm trying to build Sage from the source code. I cloned >>>>>>> it from git, and tried to build from the develop branch using make from >>>>>>> the >>>>>>> sage directory. I ran into trouble building cython. The error message >>>>>>> suggested that I email this group. Does anyone have any advice on how to >>>>>>> proceed? >>>>>>> >>>>> >>>> > >>>>>>> >>>>> >>>> > I am using macOS Big Sur 11.2 on a MacBook Air. >>>>>>> >>>>> >>>> > >>>>>>> >>>>> >>>> > The log file is attached, this is from a second run - >>>>>>> it failed once, and I tried running make a second time without any >>>>>>> changes >>>>>>> and this is the log from the second run, which returns the same error >>>>>>> just >>>>>>> without all of the info before it (eg. the flint installation). >>>>>>> >>>>> >>>> > >>>>>>> >>>>> >>>> > Thanks so much. >>>>>>> >>>>> >>>> > >>>>>>> >>>>> >>>> > Best, >>>>>>> >>>>> >>>> > Trevor >>>>>>> >>>>> >>>> > >>>>>>> >>>>> >>>> > -- >>>>>>> >>>>> >>>> > You received this message because you are subscribed to >>>>>>> the Google Groups "sage-devel" group. >>>>>>> >>>>> >>>> > To unsubscribe from this group and stop receiving >>>>>>> emails from it, send an email to [email protected]. >>>>>>> >>>>> >>>> > To view this discussion on the web visit >>>>>>> https://groups.google.com/d/msgid/sage-devel/1c93ec2e-86bd-45f0-bba0-cc254a392305n%40googlegroups.com >>>>>>> . >>>>>>> >>>>> >>>> >>>>>>> >>>>> >>>> -- >>>>>>> >>>>> >>>> You received this message because you are subscribed to a >>>>>>> topic in the Google Groups "sage-devel" group. >>>>>>> >>>>> >>>> To unsubscribe from this topic, visit >>>>>>> https://groups.google.com/d/topic/sage-devel/TmbLnmwz2mg/unsubscribe >>>>>>> . >>>>>>> >>>>> >>>> To unsubscribe from this group and all its topics, send >>>>>>> an email to [email protected]. >>>>>>> >>>>> >>>> To view this discussion on the web visit >>>>>>> https://groups.google.com/d/msgid/sage-devel/CAAWYfq3CFFAYzUtNnSrt_RPKW7X_p8j_VXGtZbKLWG%2BST%3DCO%2BQ%40mail.gmail.com >>>>>>> . >>>>>>> >>>>> >>> >>>>>>> >>>>> >>> -- >>>>>>> >>>>> >>> Best, >>>>>>> >>>>> >>> >>>>>>> >>>>> >>> Trevor >>>>>>> >>>>> >>> >>>>>>> >>>>> >>> -- >>>>>>> >>>>> >>> You received this message because you are subscribed to >>>>>>> the Google Groups "sage-devel" group. >>>>>>> >>>>> >>> To unsubscribe from this group and stop receiving emails >>>>>>> from it, send an email to [email protected]. >>>>>>> >>>>> >>> To view this discussion on the web visit >>>>>>> https://groups.google.com/d/msgid/sage-devel/CAJ6VCMAVGG57CHovd7zoXa0C3Nxsr3WfXi0FWwapKrDfup7_sA%40mail.gmail.com >>>>>>> . >>>>>>> >>>>> >> >>>>>>> >>>>> >> -- >>>>>>> >>>>> >> You received this message because you are subscribed to a >>>>>>> topic in the Google Groups "sage-devel" group. >>>>>>> >>>>> >> To unsubscribe from this topic, visit >>>>>>> https://groups.google.com/d/topic/sage-devel/TmbLnmwz2mg/unsubscribe >>>>>>> . >>>>>>> >>>>> >> To unsubscribe from this group and all its topics, send an >>>>>>> email to [email protected]. >>>>>>> >>>>> >> To view this discussion on the web visit >>>>>>> https://groups.google.com/d/msgid/sage-devel/CAAWYfq026cNP9FTmBySPskZZoc%2BH4ykTQO7je6TW4YTkirg_qw%40mail.gmail.com >>>>>>> . >>>>>>> >>>>> > >>>>>>> >>>>> > -- >>>>>>> >>>>> > You received this message because you are subscribed to the >>>>>>> Google Groups "sage-devel" group. >>>>>>> >>>>> > To unsubscribe from this group and stop receiving emails >>>>>>> from it, send an email to [email protected]. >>>>>>> >>>>> > To view this discussion on the web visit >>>>>>> https://groups.google.com/d/msgid/sage-devel/CAJ6VCMDJEN7KzDmvB0x0GDrXiQrK3F_e_eBZvSJf-JxVre0n-Q%40mail.gmail.com >>>>>>> . >>>>>>> >>>>> >>>>>>> >>>>> -- >>>>>>> >>>>> You received this message because you are subscribed to a >>>>>>> topic in the Google Groups "sage-devel" group. >>>>>>> >>>>> To unsubscribe from this topic, visit >>>>>>> https://groups.google.com/d/topic/sage-devel/TmbLnmwz2mg/unsubscribe >>>>>>> . >>>>>>> >>>>> To unsubscribe from this group and all its topics, send an >>>>>>> email to [email protected]. >>>>>>> >>>>> >>>>>>> >>>>> To view this discussion on the web visit >>>>>>> https://groups.google.com/d/msgid/sage-devel/CAAWYfq3meWN5AWip9BG5GzJ%3DFfLvoHKFrpS6Ezmq4X2GWH8mQw%40mail.gmail.com >>>>>>> . >>>>>>> >>> >>>>>>> >>> -- >>>>>>> >>> You received this message because you are subscribed to a topic >>>>>>> in the Google Groups "sage-devel" group. >>>>>>> >>> To unsubscribe from this topic, visit >>>>>>> https://groups.google.com/d/topic/sage-devel/TmbLnmwz2mg/unsubscribe >>>>>>> . >>>>>>> >>> To unsubscribe from this group and all its topics, send an email >>>>>>> to [email protected]. >>>>>>> >>> >>>>>>> >>> To view this discussion on the web visit >>>>>>> https://groups.google.com/d/msgid/sage-devel/c02796d9-9057-41e2-829f-eeb933132d42n%40googlegroups.com >>>>>>> . >>>>>>> > >>>>>>> > -- >>>>>>> > You received this message because you are subscribed to the Google >>>>>>> Groups "sage-devel" group. >>>>>>> > To unsubscribe from this group and stop receiving emails from it, >>>>>>> send an email to [email protected]. >>>>>>> >>>>>> > To view this discussion on the web visit >>>>>>> https://groups.google.com/d/msgid/sage-devel/bd636baa-f6b1-42f7-866b-77ba0af40b6en%40googlegroups.com >>>>>>> . >>>>>>> >>>>>>> -- >>>>>>> You received this message because you are subscribed to a topic in >>>>>>> the Google Groups "sage-devel" group. >>>>>>> To unsubscribe from this topic, visit >>>>>>> https://groups.google.com/d/topic/sage-devel/TmbLnmwz2mg/unsubscribe >>>>>>> . >>>>>>> To unsubscribe from this group and all its topics, send an email to >>>>>>> [email protected]. >>>>>>> >>>>>> To view this discussion on the web visit >>>>>>> https://groups.google.com/d/msgid/sage-devel/CAAWYfq08zf6vp0LfT%2BGfAy25ML95cxTyxAQho9gB_UdGjqpHFA%40mail.gmail.com >>>>>>> . >>>>>>> >>>>>> -- >>>>> You received this message because you are subscribed to a topic in the >>>>> Google Groups "sage-devel" group. >>>>> To unsubscribe from this topic, visit >>>>> https://groups.google.com/d/topic/sage-devel/TmbLnmwz2mg/unsubscribe. >>>>> To unsubscribe from this group and all its topics, send an email to >>>>> [email protected]. >>>>> >>>> To view this discussion on the web visit >>>>> https://groups.google.com/d/msgid/sage-devel/c6d5aec3-7f1c-4dc7-a94b-d1e2ab5fdf53n%40googlegroups.com >>>>> <https://groups.google.com/d/msgid/sage-devel/c6d5aec3-7f1c-4dc7-a94b-d1e2ab5fdf53n%40googlegroups.com?utm_medium=email&utm_source=footer> >>>>> . >>>>> >>>> -- >>>> Best, >>>> >>>> Trevor >>>> >>> -- >>> You received this message because you are subscribed to a topic in the >>> Google Groups "sage-devel" group. >>> To unsubscribe from this topic, visit >>> https://groups.google.com/d/topic/sage-devel/TmbLnmwz2mg/unsubscribe. >>> To unsubscribe from this group and all its topics, send an email to >>> [email protected]. >>> >> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-devel/47b9954f-e37a-4a81-a7f4-7747b8139e5an%40googlegroups.com >>> 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numpy-1.19.4.log
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