On Tue, Feb 9, 2021 at 4:07 AM Zachary Scherr <[email protected]> wrote: > > I need to sign off for the night, but the numpy error is definitely related > to gfortran. If you have gcc installed via homebrew then it should come with > the latest version of gfortran. You can see from your config.log file that > gfortran is not found: > > configure:7281: checking for gfortran > configure:7311: result: no > > and other standard homebrew packages are not found, like openblas: > > configure:12171: checking BLAS library > configure:12190: result: openblas > configure:12239: checking whether any of gfortran is installed as or will be > installed as SPKG > configure:12243: result: yes; install openblas as well > configure:13540: no suitable system package found for SPKG openblas > > are you aware if you have gcc and openblas installed via homebrew? I also see > that you didn't run "source .homebrew-build-env" before running ./configure > since I don't see certain items on your path. If you go to the sage > installation guide at > https://doc.sagemath.org/html/en/installation/source.html#macos-recommended-installation > you can see a list of homebrew packages you might want to have before > installing sage. I think if you get everything in working order with > homebrew then you shouldn't have any issues installing sage. Here is my best > suggestion as to what to try: > > - fix all "brew doctor" warnings. This might not be necessary, but I get > worried when I see so many warnings. You can probably just delete all the > suggested files and you should be fine. > > - install all the recommended homebrew packages. If any are already > installed then maybe try "brew reinstall" to make sure it is installed > properly. If you think you have homebrew gcc installed then you should be > able to do "which gfortran" and "gfortran --version". That should hopefully > show you that you have gfortran 10.2.0_3. > > - in your sage folder under the develop branch you should run the commands I > mentioned, and don't skip out on "source .homebrew-build-env": > > >> make distclean > >> ./bootstrap > >> source .homebrew-build-env > >> ./configure > > Before running "make -j4 build" you can look at config.log and make sure that > it picked up all of the relevant homebrew packages. > > source .homebrew-build-env
should be run before ./bootstrap as well, ./confugure at the end of its run outputs an advice on packages that can still be installed. > > > > On Monday, February 8, 2021 at 10:52:43 PM UTC-5 Trevor Karn wrote: >> >> Here is the new one. Thanks so much for all of your help on this, Zachary. >> >> >> Best Regards, >> >> Trevor Karn >> >> >> On Mon, Feb 8, 2021 at 9:40 PM Zachary Scherr <[email protected]> wrote: >>> >>> At some point you should deal with those warnings, but I don't think that >>> is what is causing your problems (although they are probably symptomatic of >>> other possible issues). >>> >>> The config.log file you posted earlier is picking up a lot of packages that >>> were built by sage and not from homebrew. Do you have the config.log file >>> that you got after running make distclean? >>> >>> On Monday, February 8, 2021 at 10:10:01 PM UTC-5 Trevor Karn wrote: >>>> >>>> brew doctor is giving lots of errors about unbrewed files: >>>> >>>> trevorkarn@Trevors-MacBook-Air sage % brew doctor >>>> >>>> Please note that these warnings are just used to help the Homebrew >>>> maintainers >>>> >>>> with debugging if you file an issue. If everything you use Homebrew for is >>>> >>>> working fine: please don't worry or file an issue; just ignore this. >>>> Thanks! >>>> >>>> >>>> Warning: Unbrewed dylibs were found in /usr/local/lib. >>>> >>>> If you didn't put them there on purpose they could cause problems when >>>> >>>> building Homebrew formulae, and may need to be deleted. >>>> >>>> >>>> Unexpected dylibs: >>>> >>>> /usr/local/lib/libtcl8.6.dylib >>>> >>>> /usr/local/lib/libtk8.6.dylib >>>> >>>> >>>> Warning: Unbrewed header files were found in /usr/local/include. >>>> >>>> If you didn't put them there on purpose they could cause problems when >>>> >>>> building Homebrew formulae, and may need to be deleted. >>>> >>>> >>>> Unexpected header files: >>>> >>>> /usr/local/include/fakemysql.h >>>> >>>> /usr/local/include/fakepq.h >>>> >>>> /usr/local/include/fakesql.h >>>> >>>> /usr/local/include/itcl.h >>>> >>>> /usr/local/include/itcl2TclOO.h >>>> >>>> /usr/local/include/itclDecls.h >>>> >>>> /usr/local/include/itclInt.h >>>> >>>> /usr/local/include/itclIntDecls.h >>>> >>>> /usr/local/include/itclMigrate2TclCore.h >>>> >>>> /usr/local/include/itclTclIntStubsFcn.h >>>> >>>> /usr/local/include/mysqlStubs.h >>>> >>>> /usr/local/include/odbcStubs.h >>>> >>>> /usr/local/include/pqStubs.h >>>> >>>> /usr/local/include/tcl.h >>>> >>>> /usr/local/include/tclDecls.h >>>> >>>> /usr/local/include/tclOO.h >>>> >>>> /usr/local/include/tclOODecls.h >>>> >>>> /usr/local/include/tclPlatDecls.h >>>> >>>> /usr/local/include/tclThread.h >>>> >>>> /usr/local/include/tclTomMath.h >>>> >>>> /usr/local/include/tclTomMathDecls.h >>>> >>>> /usr/local/include/tdbc.h >>>> >>>> /usr/local/include/tdbcDecls.h >>>> >>>> /usr/local/include/tdbcInt.h >>>> >>>> /usr/local/include/tk.h >>>> >>>> /usr/local/include/tkDecls.h >>>> >>>> /usr/local/include/tkPlatDecls.h >>>> >>>> >>>> Warning: Unbrewed '.pc' files were found in /usr/local/lib/pkgconfig. >>>> >>>> If you didn't put them there on purpose they could cause problems when >>>> >>>> building Homebrew formulae, and may need to be deleted. >>>> >>>> >>>> Unexpected '.pc' files: >>>> >>>> /usr/local/lib/pkgconfig/tcl.pc >>>> >>>> /usr/local/lib/pkgconfig/tk.pc >>>> >>>> >>>> Warning: Unbrewed static libraries were found in /usr/local/lib. >>>> >>>> If you didn't put them there on purpose they could cause problems when >>>> >>>> building Homebrew formulae, and may need to be deleted. >>>> >>>> >>>> Unexpected static libraries: >>>> >>>> /usr/local/lib/libtclstub8.6.a >>>> >>>> /usr/local/lib/libtkstub8.6.a >>>> >>>> >>>> Warning: You have unlinked kegs in your Cellar. >>>> >>>> Leaving kegs unlinked can lead to build-trouble and cause formulae that >>>> depend on >>>> >>>> those kegs to fail to run properly once built. Run `brew link` on these: >>>> >>>> ffmpeg >>>> >>>> ghostscript >>>> >>>> >>>> Warning: Homebrew's "sbin" was not found in your PATH but you have >>>> installed >>>> >>>> formulae that put executables in /usr/local/sbin. >>>> >>>> Consider setting your PATH for example like so: >>>> >>>> echo 'export PATH="/usr/local/sbin:$PATH"' >> ~/.zshrc >>>> >>>> >>>> Warning: Broken symlinks were found. Remove them with `brew cleanup`: >>>> >>>> /usr/local/bin/git-trac >>>> >>>> /usr/local/share/ghostscript/9.27/Resource/Font/wasy10.pfb >>>> >>>> /usr/local/share/ghostscript/9.27/Resource/Font/wasy5.pfb >>>> >>>> /usr/local/share/ghostscript/9.27/Resource/Font/wasy6.pfb >>>> >>>> /usr/local/share/ghostscript/9.27/Resource/Font/wasy7.pfb >>>> >>>> /usr/local/share/ghostscript/9.27/Resource/Font/wasy8.pfb >>>> >>>> /usr/local/share/ghostscript/9.27/Resource/Font/wasy9.pfb >>>> >>>> /usr/local/share/ghostscript/9.27/Resource/Font/wasyb10.pfb >>>> >>>> /usr/local/share/man/man1/brew-cask.1 >>>> >>>> /usr/local/share/zsh/site-functions/_brew_cask >>>> >>>> trevorkarn@Trevors-MacBook-Air sage % brew cleanup >>>> >>>> Removing: /usr/local/Cellar/gettext/0.20.1... (1,899 files, 18.5MB) >>>> >>>> Removing: /usr/local/Cellar/gmp/6.1.2_2... (18 files, 3.1MB) >>>> >>>> Removing: /usr/local/Cellar/gnutls/3.6.9... (1,227 files, 9.9MB) >>>> >>>> Removing: /usr/local/Cellar/icu4c/64.2... (257 files, 69.2MB) >>>> >>>> Removing: /usr/local/Cellar/libevent/2.1.11... (1,063 files, 5MB) >>>> >>>> Removing: /usr/local/Cellar/libffi/3.2.1... (16 files, 296.8KB) >>>> >>>> Removing: /usr/local/Cellar/libidn2/2.2.0_1... (70 files, 700.9KB) >>>> >>>> Removing: /usr/local/Cellar/libtasn1/4.14... (59 files, 384KB) >>>> >>>> Removing: /usr/local/Cellar/nettle/3.4.1... (85 files, 2MB) >>>> >>>> Error: Interrupted system call @ dir_initialize - /usr/local/Cellar/opus >>>> >>>> trevorkarn@Trevors-MacBook-Air sage % ;2D >>>> >>>> >>>> Best Regards, >>>> >>>> Trevor Karn >>>> >>>> >>>> On Mon, Feb 8, 2021 at 8:38 PM Zachary Scherr <[email protected]> wrote: >>>>> >>>>> In your original config.log, it looked like sage was picking up its own >>>>> fortran: >>>>> >>>>> configure:11991: gfortran has already been installed by SageMath >>>>> configure:39396: result: gfortran-9.2.0: >>>>> already installed as an SPKG >>>>> >>>>> The current version of gfortran from homebrew is 10.2.0 version 3 >>>>> >>>>> GNU Fortran (Homebrew GCC 10.2.0_3) 10.2.0 >>>>> Copyright (C) 2020 Free Software Foundation, Inc. >>>>> This is free software; see the source for copying conditions. There is NO >>>>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR >>>>> PURPOSE. >>>>> >>>>> ./configure should be picking up homebrew's gfortran (installed with >>>>> gcc), and it seems from your config.log file that you do have homebrew >>>>> and therefore you should have the most recent gfortran. >>>>> Do you have the newest config.log file from after running make distclean? >>>>> You may also want to try running >>>>> >>>>> brew doctor >>>>> >>>>> to see if there is something wrong with your homebrew. >>>>> On Monday, February 8, 2021 at 9:27:11 PM UTC-5 Trevor Karn wrote: >>>>>> >>>>>> Unfortunately, that did not seem to work. >>>>>> >>>>>> Here are the last few lines of the terminal output and I've attached the >>>>>> numpy log. >>>>>> >>>>>> [singular-4.1.1p2.p0] real 28m38.843s >>>>>> >>>>>> [singular-4.1.1p2.p0] user 24m18.545s >>>>>> >>>>>> [singular-4.1.1p2.p0] sys 3m53.423s >>>>>> >>>>>> [singular-4.1.1p2.p0] Copying package files from temporary location >>>>>> /Users/trevorkarn/Applications/sage/local/var/tmp/sage/build/singular-4.1.1p2.p0/inst >>>>>> to /Users/trevorkarn/Applications/sage/local >>>>>> >>>>>> [singular-4.1.1p2.p0] Successfully installed singular-4.1.1p2.p0 >>>>>> >>>>>> [singular-4.1.1p2.p0] Deleting temporary build directory >>>>>> >>>>>> [singular-4.1.1p2.p0] >>>>>> /Users/trevorkarn/Applications/sage/local/var/tmp/sage/build/singular-4.1.1p2.p0 >>>>>> >>>>>> [singular-4.1.1p2.p0] Finished installing singular-4.1.1p2.p0 >>>>>> >>>>>> make[2]: *** [all-build] Error 2 >>>>>> >>>>>> >>>>>> real 182m14.796s >>>>>> >>>>>> user 355m33.883s >>>>>> >>>>>> sys 72m32.388s >>>>>> >>>>>> *************************************************************** >>>>>> >>>>>> Error building Sage. >>>>>> >>>>>> >>>>>> The following package(s) may have failed to build (not necessarily >>>>>> >>>>>> during this run of 'make all-build'): >>>>>> >>>>>> >>>>>> * package: numpy-1.19.4 >>>>>> >>>>>> last build time: Feb 8 19:48 >>>>>> >>>>>> log file: >>>>>> /Users/trevorkarn/Applications/sage/logs/pkgs/numpy-1.19.4.log >>>>>> >>>>>> build directory: >>>>>> /Users/trevorkarn/Applications/sage/local/var/tmp/sage/build/numpy-1.19.4 >>>>>> >>>>>> >>>>>> It is safe to delete any log files and build directories, but they >>>>>> >>>>>> contain information that is helpful for debugging build problems. >>>>>> >>>>>> WARNING: If you now run 'make' again, the build directory of the >>>>>> >>>>>> same version of the package will, by default, be deleted. Set the >>>>>> >>>>>> environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. >>>>>> >>>>>> >>>>>> make[1]: *** [all-build] Error 1 >>>>>> >>>>>> make: *** [build] Error 2 >>>>>> >>>>>> trevorkarn@Trevors-MacBook-Air sage % >>>>>> >>>>>> >>>>>> >>>>>> Best Regards, >>>>>> >>>>>> Trevor Karn >>>>>> >>>>>> >>>>>> On Mon, Feb 8, 2021 at 1:56 PM Zachary Scherr <[email protected]> wrote: >>>>>>> >>>>>>> yea, something seems messed up. For example, the numpy problem was >>>>>>> fixed on beta 6 and should still be fixed in beta 7. It looks like >>>>>>> somehow you have old files hanging around which are causing problems. >>>>>>> Hopefully make distclean will clean everything and let you start fresh. >>>>>>> >>>>>>> On Monday, February 8, 2021 at 2:25:16 PM UTC-5 Trevor Karn wrote: >>>>>>>> >>>>>>>> I must have typed it wrong. The second option you gave failed on >>>>>>>> numpy, but I tried the first option again, and it is compiling. >>>>>>>> >>>>>>>> Best Regards, >>>>>>>> >>>>>>>> Trevor Karn >>>>>>>> >>>>>>>> >>>>>>>> On Mon, Feb 8, 2021 at 11:31 AM Zachary Scherr <[email protected]> >>>>>>>> wrote: >>>>>>>>> >>>>>>>>> Are you sure you typed it correctly? Maybe try running >>>>>>>>> >>>>>>>>> ./bootstrap >>>>>>>>> >>>>>>>>> to make sure that the make targets are in order. >>>>>>>>> >>>>>>>>> On Monday, February 8, 2021 at 12:27:01 PM UTC-5 Trevor Karn wrote: >>>>>>>>>> >>>>>>>>>> I tried make distclean and got an error “make: *** No rule to make >>>>>>>>>> target ‘distclean’. Stop.” >>>>>>>>>> >>>>>>>>>> So I tried your second suggestion and it seems to be working so far, >>>>>>>>>> but it is still compiling. >>>>>>>>>> >>>>>>>>>> On Mon, Feb 8, 2021 at 10:29 AM Zachary Scherr <[email protected]> >>>>>>>>>> wrote: >>>>>>>>>>> >>>>>>>>>>> Probably the thing to try would be: >>>>>>>>>>> >>>>>>>>>>> make distclean >>>>>>>>>>> >>>>>>>>>>> and then you can build from scratch via: >>>>>>>>>>> >>>>>>>>>>> ./bootstrap >>>>>>>>>>> source .homebrew-build-env >>>>>>>>>>> ./configure >>>>>>>>>>> make -j4 build >>>>>>>>>>> >>>>>>>>>>> But if you want to try cleaning wheel first before starting from >>>>>>>>>>> scratch, you could just try >>>>>>>>>>> >>>>>>>>>>> make wheel-clean >>>>>>>>>>> make -j4 build >>>>>>>>>>> >>>>>>>>>>> but it might be better to clean everything and start from scratch. >>>>>>>>>>> >>>>>>>>>>> On Monday, February 8, 2021 at 10:59:05 AM UTC-5 Trevor Karn wrote: >>>>>>>>>>>> >>>>>>>>>>>> I do not see pep425tags.py in that directory. >>>>>>>>>>>> >>>>>>>>>>>> trevorkarn@Trevors-MacBook-Air sage % cd >>>>>>>>>>>> /Users/trevorkarn/Applications/sage/local/lib/python3.9/site-packages/wheel/ >>>>>>>>>>>> >>>>>>>>>>>> trevorkarn@Trevors-MacBook-Air wheel % ls >>>>>>>>>>>> >>>>>>>>>>>> __init__.py __pycache__ cli metadata.py util.py wheelfile.py >>>>>>>>>>>> >>>>>>>>>>>> __main__.py bdist_wheel.py macosx_libfile.py pkginfo.py vendored >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> Is there a way to clean the build environment? >>>>>>>>>>>> >>>>>>>>>>>> Best Regards, >>>>>>>>>>>> >>>>>>>>>>>> Trevor Karn >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> On Mon, Feb 8, 2021 at 9:54 AM Dima Pasechnik <[email protected]> >>>>>>>>>>>> wrote: >>>>>>>>>>>>> >>>>>>>>>>>>> the only explanation for pep425tags.py would be an unclean build >>>>>>>>>>>>> environment - e.g. weird env vars set, or strange stuff in PATH. >>>>>>>>>>>>> >>>>>>>>>>>>> On Mon, Feb 8, 2021 at 3:51 PM Zachary Scherr <[email protected]> >>>>>>>>>>>>> wrote: >>>>>>>>>>>>> > >>>>>>>>>>>>> > and do you see that pep425tags.py file in that directory? >>>>>>>>>>>>> > >>>>>>>>>>>>> > On Monday, February 8, 2021 at 10:21:09 AM UTC-5 Trevor Karn >>>>>>>>>>>>> > wrote: >>>>>>>>>>>>> >> >>>>>>>>>>>>> >> The only contents of the file you pointed me towards are >>>>>>>>>>>>> >> >>>>>>>>>>>>> >> __version__ = '0.36.2' >>>>>>>>>>>>> >> >>>>>>>>>>>>> >> Best Regards, >>>>>>>>>>>>> >> >>>>>>>>>>>>> >> Trevor Karn >>>>>>>>>>>>> >> >>>>>>>>>>>>> >> >>>>>>>>>>>>> >> On Mon, Feb 8, 2021 at 9:09 AM Zachary Scherr >>>>>>>>>>>>> >> <[email protected]> wrote: >>>>>>>>>>>>> >>> >>>>>>>>>>>>> >>> I really don't understand. The Cython log file shows that >>>>>>>>>>>>> >>> the problem is in >>>>>>>>>>>>> >>> >>>>>>>>>>>>> >>> /Users/trevorkarn/Applications/sage/local/lib/python3.9/site-packages/wheel/pep425tags.py >>>>>>>>>>>>> >>> >>>>>>>>>>>>> >>> I could be mistaken, but I don't think pep425tags.py has been >>>>>>>>>>>>> >>> a part of the wheel package for a while now. Certainly when >>>>>>>>>>>>> >>> I looked at wheel on my sage there was no such file. >>>>>>>>>>>>> >>> >>>>>>>>>>>>> >>> Can you go to your >>>>>>>>>>>>> >>> "/Users/trevorkarn/Applications/sage/local/lib/python3.9/site-packages/wheel/" >>>>>>>>>>>>> >>> directory and take a look at __init__.py. Does the version >>>>>>>>>>>>> >>> say 0.36.2? >>>>>>>>>>>>> >>> >>>>>>>>>>>>> >>> On Monday, February 8, 2021 at 9:32:20 AM UTC-5 Trevor Karn >>>>>>>>>>>>> >>> wrote: >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> Here is what I get. It seems like it is the same as yours? >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> trevorkarn@Trevors-MacBook-Air sage % brew info python3 >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> [email protected]: stable 3.9.1 >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> Interpreted, interactive, object-oriented programming >>>>>>>>>>>>> >>>> language >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> https://www.python.org/ >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> /usr/local/Cellar/[email protected]/3.9.1_8 (8,665 files, 129.4MB) * >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> Built from source on 2021-02-05 at 16:39:31 >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> From: >>>>>>>>>>>>> >>>> https://github.com/Homebrew/homebrew-core/blob/HEAD/Formula/[email protected] >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> License: Python-2.0 >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> ==> Dependencies >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> Build: pkg-config ✔ >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> Required: gdbm ✔, [email protected] ✔, readline ✔, sqlite ✔, >>>>>>>>>>>>> >>>> tcl-tk ✔, xz ✔ >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> ==> Caveats >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> Python has been installed as >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> /usr/local/bin/python3 >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> Unversioned symlinks `python`, `python-config`, `pip` etc. >>>>>>>>>>>>> >>>> pointing to >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> `python3`, `python3-config`, `pip3` etc., respectively, have >>>>>>>>>>>>> >>>> been installed into >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> /usr/local/opt/[email protected]/libexec/bin >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> You can install Python packages with >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> pip3 install <package> >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> They will install into the site-package directory >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> /usr/local/lib/python3.9/site-packages >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> See: https://docs.brew.sh/Homebrew-and-Python >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> ==> Analytics >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> install: 755,419 (30 days), 2,396,024 (90 days), 2,995,387 >>>>>>>>>>>>> >>>> (365 days) >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> install-on-request: 244,063 (30 days), 714,665 (90 days), >>>>>>>>>>>>> >>>> 799,812 (365 days) >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> build-error: 0 (30 days) >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> Best Regards, >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> Trevor Karn >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> >>>>>>>>>>>>> >>>> On Mon, Feb 8, 2021 at 8:17 AM Dima Pasechnik >>>>>>>>>>>>> >>>> <[email protected]> wrote: >>>>>>>>>>>>> >>>>> >>>>>>>>>>>>> >>>>> Could it be that you need to update your Homebrew (?) >>>>>>>>>>>>> >>>>> python3 package? >>>>>>>>>>>>> >>>>> What version do you have now? >>>>>>>>>>>>> >>>>> E.g. on a box where the latest Sage builds I have >>>>>>>>>>>>> >>>>> >>>>>>>>>>>>> >>>>> % brew info python3 >>>>>>>>>>>>> >>>>> >>>>>>>>>>>>> >>>>> [email protected]: stable 3.9.1 (bottled) >>>>>>>>>>>>> >>>>> Interpreted, interactive, object-oriented programming >>>>>>>>>>>>> >>>>> language >>>>>>>>>>>>> >>>>> https://www.python.org/ >>>>>>>>>>>>> >>>>> /usr/local/Cellar/[email protected]/3.9.1_8 (4,057 files, 67.8MB) * >>>>>>>>>>>>> >>>>> Poured from bottle on 2021-02-06 at 10:13:24 >>>>>>>>>>>>> >>>>> From: >>>>>>>>>>>>> >>>>> https://github.com/Homebrew/homebrew-core/blob/HEAD/Formula/[email protected] >>>>>>>>>>>>> >>>>> >>>>>>>>>>>>> >>>>> >>>>>>>>>>>>> >>>>> On Mon, Feb 8, 2021 at 1:53 PM Trevor Karn >>>>>>>>>>>>> >>>>> <[email protected]> wrote: >>>>>>>>>>>>> >>>>> > >>>>>>>>>>>>> >>>>> > Ah I see, thanks for explaining. >>>>>>>>>>>>> >>>>> > >>>>>>>>>>>>> >>>>> > Here is my top-level config.log. >>>>>>>>>>>>> >>>>> > >>>>>>>>>>>>> >>>>> > Best Regards, >>>>>>>>>>>>> >>>>> > >>>>>>>>>>>>> >>>>> > Trevor Karn >>>>>>>>>>>>> >>>>> > >>>>>>>>>>>>> >>>>> > >>>>>>>>>>>>> >>>>> > On Mon, Feb 8, 2021 at 7:09 AM Dima Pasechnik >>>>>>>>>>>>> >>>>> > <[email protected]> wrote: >>>>>>>>>>>>> >>>>> >> >>>>>>>>>>>>> >>>>> >> >>>>>>>>>>>>> >>>>> >> >>>>>>>>>>>>> >>>>> >> On Mon, 8 Feb 2021, 13:02 Trevor Karn, >>>>>>>>>>>>> >>>>> >> <[email protected]> wrote: >>>>>>>>>>>>> >>>>> >>> >>>>>>>>>>>>> >>>>> >>> Thanks for sending that link. I am confused though, >>>>>>>>>>>>> >>>>> >>> because it says a fix was issued. Does that mean it >>>>>>>>>>>>> >>>>> >>> should work now? >>>>>>>>>>>>> >>>>> >> >>>>>>>>>>>>> >>>>> >> >>>>>>>>>>>>> >>>>> >> sorry, I was not clear. What I meant to say that it >>>>>>>>>>>>> >>>>> >> appears to be a well-known issue in the Python@macOS >>>>>>>>>>>>> >>>>> >> universe, >>>>>>>>>>>>> >>>>> >> and lately all seems to be OK with Sage. >>>>>>>>>>>>> >>>>> >> >>>>>>>>>>>>> >>>>> >> To figure out exactly goes wrong in your case, we need >>>>>>>>>>>>> >>>>> >> to know where Python3 used in Sage is coming from. >>>>>>>>>>>>> >>>>> >> Please post the top-level config.log >>>>>>>>>>>>> >>>>> >> >>>>>>>>>>>>> >>>>> >> >>>>>>>>>>>>> >>>>> >>> >>>>>>>>>>>>> >>>>> >>> And yes, I am on the most recent develop branch >>>>>>>>>>>>> >>>>> >>> >>>>>>>>>>>>> >>>>> >>> On Mon, Feb 8, 2021 at 5:42 AM Dima Pasechnik >>>>>>>>>>>>> >>>>> >>> <[email protected]> wrote: >>>>>>>>>>>>> >>>>> >>>> >>>>>>>>>>>>> >>>>> >>>> This seems to be well-known issue, see e.g >>>>>>>>>>>>> >>>>> >>>> https://github.com/pypa/virtualenv/issues/2027 >>>>>>>>>>>>> >>>>> >>>> >>>>>>>>>>>>> >>>>> >>>> Are you on the most recent develop branch (9.3.beta7)? >>>>>>>>>>>>> >>>>> >>>> >>>>>>>>>>>>> >>>>> >>>> On Mon, Feb 8, 2021 at 9:20 AM Trevor Karn >>>>>>>>>>>>> >>>>> >>>> <[email protected]> wrote: >>>>>>>>>>>>> >>>>> >>>> > >>>>>>>>>>>>> >>>>> >>>> > Hi, >>>>>>>>>>>>> >>>>> >>>> > >>>>>>>>>>>>> >>>>> >>>> > I'm trying to build Sage from the source code. I >>>>>>>>>>>>> >>>>> >>>> > cloned it from git, and tried to build from the >>>>>>>>>>>>> >>>>> >>>> > develop branch using make from the sage directory. I >>>>>>>>>>>>> >>>>> >>>> > ran into trouble building cython. The error message >>>>>>>>>>>>> >>>>> >>>> > suggested that I email this group. Does anyone have >>>>>>>>>>>>> >>>>> >>>> > any advice on how to proceed? >>>>>>>>>>>>> >>>>> >>>> > >>>>>>>>>>>>> >>>>> >>>> > I am using macOS Big Sur 11.2 on a MacBook Air. >>>>>>>>>>>>> >>>>> >>>> > >>>>>>>>>>>>> >>>>> >>>> > The log file is attached, this is from a second run >>>>>>>>>>>>> >>>>> >>>> > - it failed once, and I tried running make a second >>>>>>>>>>>>> >>>>> >>>> > time without any changes and this is the log from >>>>>>>>>>>>> >>>>> >>>> > the second run, which returns the same error just >>>>>>>>>>>>> >>>>> >>>> > without all of the info before it (eg. the flint >>>>>>>>>>>>> >>>>> >>>> > installation). >>>>>>>>>>>>> >>>>> >>>> > >>>>>>>>>>>>> >>>>> >>>> > Thanks so much. >>>>>>>>>>>>> >>>>> >>>> > >>>>>>>>>>>>> >>>>> >>>> > Best, >>>>>>>>>>>>> >>>>> >>>> > Trevor >>>>>>>>>>>>> >>>>> >>>> > >>>>>>>>>>>>> >>>>> >>>> > -- >>>>>>>>>>>>> >>>>> >>>> > You received this message because you are subscribed >>>>>>>>>>>>> >>>>> >>>> > to the Google Groups "sage-devel" group. >>>>>>>>>>>>> >>>>> >>>> > To unsubscribe from this group and stop receiving >>>>>>>>>>>>> >>>>> >>>> > emails from it, send an email to >>>>>>>>>>>>> >>>>> >>>> > [email protected]. >>>>>>>>>>>>> >>>>> >>>> > To view this discussion on the web visit >>>>>>>>>>>>> >>>>> >>>> > https://groups.google.com/d/msgid/sage-devel/1c93ec2e-86bd-45f0-bba0-cc254a392305n%40googlegroups.com. >>>>>>>>>>>>> >>>>> >>>> >>>>>>>>>>>>> >>>>> >>>> -- >>>>>>>>>>>>> >>>>> >>>> You received this message because you are subscribed >>>>>>>>>>>>> >>>>> >>>> to a topic in the Google Groups "sage-devel" group. >>>>>>>>>>>>> >>>>> >>>> To unsubscribe from this topic, visit >>>>>>>>>>>>> >>>>> >>>> https://groups.google.com/d/topic/sage-devel/TmbLnmwz2mg/unsubscribe. >>>>>>>>>>>>> >>>>> >>>> To unsubscribe from this group and all its topics, >>>>>>>>>>>>> >>>>> >>>> send an email to [email protected]. >>>>>>>>>>>>> >>>>> >>>> To view this discussion on the web visit >>>>>>>>>>>>> >>>>> >>>> https://groups.google.com/d/msgid/sage-devel/CAAWYfq3CFFAYzUtNnSrt_RPKW7X_p8j_VXGtZbKLWG%2BST%3DCO%2BQ%40mail.gmail.com. >>>>>>>>>>>>> >>>>> >>> >>>>>>>>>>>>> >>>>> >>> -- >>>>>>>>>>>>> >>>>> >>> Best, >>>>>>>>>>>>> >>>>> >>> >>>>>>>>>>>>> >>>>> >>> Trevor >>>>>>>>>>>>> >>>>> >>> >>>>>>>>>>>>> >>>>> >>> -- >>>>>>>>>>>>> >>>>> >>> You received this message because you are subscribed to >>>>>>>>>>>>> >>>>> >>> the Google Groups "sage-devel" group. >>>>>>>>>>>>> >>>>> >>> To unsubscribe from this group and stop receiving >>>>>>>>>>>>> >>>>> >>> emails from it, send an email to >>>>>>>>>>>>> >>>>> >>> [email protected]. >>>>>>>>>>>>> >>>>> >>> To view this discussion on the web visit >>>>>>>>>>>>> >>>>> >>> https://groups.google.com/d/msgid/sage-devel/CAJ6VCMAVGG57CHovd7zoXa0C3Nxsr3WfXi0FWwapKrDfup7_sA%40mail.gmail.com. >>>>>>>>>>>>> >>>>> >> >>>>>>>>>>>>> >>>>> >> -- >>>>>>>>>>>>> >>>>> >> You received this message because you are subscribed to >>>>>>>>>>>>> >>>>> >> a topic in the Google Groups "sage-devel" group. >>>>>>>>>>>>> >>>>> >> To unsubscribe from this topic, visit >>>>>>>>>>>>> >>>>> >> https://groups.google.com/d/topic/sage-devel/TmbLnmwz2mg/unsubscribe. >>>>>>>>>>>>> >>>>> >> To unsubscribe from this group and all its topics, send >>>>>>>>>>>>> >>>>> >> an email to [email protected]. >>>>>>>>>>>>> >>>>> >> To view this discussion on the web visit >>>>>>>>>>>>> >>>>> >> https://groups.google.com/d/msgid/sage-devel/CAAWYfq026cNP9FTmBySPskZZoc%2BH4ykTQO7je6TW4YTkirg_qw%40mail.gmail.com. >>>>>>>>>>>>> >>>>> > >>>>>>>>>>>>> >>>>> > -- >>>>>>>>>>>>> >>>>> > You received this message because you are subscribed to >>>>>>>>>>>>> >>>>> > the Google Groups "sage-devel" group. >>>>>>>>>>>>> >>>>> > To unsubscribe from this group and stop receiving emails >>>>>>>>>>>>> >>>>> > from it, send an email to [email protected]. >>>>>>>>>>>>> >>>>> > To view this discussion on the web visit >>>>>>>>>>>>> >>>>> > https://groups.google.com/d/msgid/sage-devel/CAJ6VCMDJEN7KzDmvB0x0GDrXiQrK3F_e_eBZvSJf-JxVre0n-Q%40mail.gmail.com. >>>>>>>>>>>>> >>>>> >>>>>>>>>>>>> >>>>> -- >>>>>>>>>>>>> >>>>> You received this message because you are subscribed to a >>>>>>>>>>>>> >>>>> topic in the Google Groups "sage-devel" group. >>>>>>>>>>>>> >>>>> To unsubscribe from this topic, visit >>>>>>>>>>>>> >>>>> https://groups.google.com/d/topic/sage-devel/TmbLnmwz2mg/unsubscribe. >>>>>>>>>>>>> >>>>> To unsubscribe from this group and all its topics, send an >>>>>>>>>>>>> >>>>> email to [email protected]. >>>>>>>>>>>>> >>>>> >>>>>>>>>>>>> >>>>> To view this discussion on the web visit >>>>>>>>>>>>> >>>>> https://groups.google.com/d/msgid/sage-devel/CAAWYfq3meWN5AWip9BG5GzJ%3DFfLvoHKFrpS6Ezmq4X2GWH8mQw%40mail.gmail.com. >>>>>>>>>>>>> >>> >>>>>>>>>>>>> >>> -- >>>>>>>>>>>>> >>> You received this message because you are subscribed to a >>>>>>>>>>>>> >>> topic in the Google Groups "sage-devel" group. >>>>>>>>>>>>> >>> To 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web visit >>>>>>>>>>> https://groups.google.com/d/msgid/sage-devel/c6d5aec3-7f1c-4dc7-a94b-d1e2ab5fdf53n%40googlegroups.com. >>>>>>>>>> >>>>>>>>>> -- >>>>>>>>>> Best, >>>>>>>>>> >>>>>>>>>> Trevor >>>>>>>>> >>>>>>>>> -- >>>>>>>>> You received this message because you are subscribed to a topic in >>>>>>>>> the Google Groups "sage-devel" group. >>>>>>>>> To unsubscribe from this topic, visit >>>>>>>>> https://groups.google.com/d/topic/sage-devel/TmbLnmwz2mg/unsubscribe. >>>>>>>>> To unsubscribe from this group and all its topics, send an email to >>>>>>>>> [email protected]. >>>>>>>>> >>>>>>>>> To view this discussion on the web visit >>>>>>>>> https://groups.google.com/d/msgid/sage-devel/47b9954f-e37a-4a81-a7f4-7747b8139e5an%40googlegroups.com. >>>>>>> >>>>>>> -- >>>>>>> You received this message because you are subscribed to a topic in the >>>>>>> Google Groups "sage-devel" group. >>>>>>> To unsubscribe from this topic, visit >>>>>>> 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