I need to sign off for the night, but the numpy error is definitely related to gfortran. If you have gcc installed via homebrew then it should come with the latest version of gfortran. You can see from your config.log file that gfortran is not found:
configure:7281: checking for gfortran configure:7311: result: no and other standard homebrew packages are not found, like openblas: configure:12171: checking BLAS library configure:12190: result: openblas configure:12239: checking whether any of gfortran is installed as or will be installed as SPKG configure:12243: result: yes; install openblas as well configure:13540: no suitable system package found for SPKG openblas are you aware if you have gcc and openblas installed via homebrew? I also see that you didn't run "source .homebrew-build-env" before running ./configure since I don't see certain items on your path. If you go to the sage installation guide at https://doc.sagemath.org/html/en/installation/source.html#macos-recommended-installation you can see a list of homebrew packages you might want to have before installing sage. I think if you get everything in working order with homebrew then you shouldn't have any issues installing sage. Here is my best suggestion as to what to try: - fix all "brew doctor" warnings. This might not be necessary, but I get worried when I see so many warnings. You can probably just delete all the suggested files and you should be fine. - install all the recommended homebrew packages. If any are already installed then maybe try "brew reinstall" to make sure it is installed properly. If you think you have homebrew gcc installed then you should be able to do "which gfortran" and "gfortran --version". That should hopefully show you that you have gfortran 10.2.0_3. - in your sage folder under the develop branch you should run the commands I mentioned, and don't skip out on "source .homebrew-build-env": >> make distclean >> ./bootstrap >> source .homebrew-build-env >> ./configure Before running "make -j4 build" you can look at config.log and make sure that it picked up all of the relevant homebrew packages. On Monday, February 8, 2021 at 10:52:43 PM UTC-5 Trevor Karn wrote: > Here is the new one. Thanks so much for all of your help on this, Zachary. > > > Best Regards, > > Trevor Karn > > > On Mon, Feb 8, 2021 at 9:40 PM Zachary Scherr <[email protected]> wrote: > >> At some point you should deal with those warnings, but I don't think that >> is what is causing your problems (although they are probably symptomatic of >> other possible issues). >> >> The config.log file you posted earlier is picking up a lot of packages >> that were built by sage and not from homebrew. Do you have the config.log >> file that you got after running make distclean? >> >> On Monday, February 8, 2021 at 10:10:01 PM UTC-5 Trevor Karn wrote: >> >>> brew doctor is giving lots of errors about unbrewed files: >>> >>> trevorkarn@Trevors-MacBook-Air sage % brew doctor >>> >>> *Please note that these warnings are just used to help the Homebrew >>> maintainers* >>> >>> *with debugging if you file an issue. If everything you use Homebrew for >>> is* >>> >>> *working fine: please don't worry or file an issue; just ignore this. >>> Thanks!* >>> >>> >>> Warning: Unbrewed dylibs were found in /usr/local/lib. >>> >>> If you didn't put them there on purpose they could cause problems when >>> >>> building Homebrew formulae, and may need to be deleted. >>> >>> >>> Unexpected dylibs: >>> >>> /usr/local/lib/libtcl8.6.dylib >>> >>> /usr/local/lib/libtk8.6.dylib >>> >>> >>> Warning: Unbrewed header files were found in /usr/local/include. >>> >>> If you didn't put them there on purpose they could cause problems when >>> >>> building Homebrew formulae, and may need to be deleted. >>> >>> >>> Unexpected header files: >>> >>> /usr/local/include/fakemysql.h >>> >>> /usr/local/include/fakepq.h >>> >>> /usr/local/include/fakesql.h >>> >>> /usr/local/include/itcl.h >>> >>> /usr/local/include/itcl2TclOO.h >>> >>> /usr/local/include/itclDecls.h >>> >>> /usr/local/include/itclInt.h >>> >>> /usr/local/include/itclIntDecls.h >>> >>> /usr/local/include/itclMigrate2TclCore.h >>> >>> /usr/local/include/itclTclIntStubsFcn.h >>> >>> /usr/local/include/mysqlStubs.h >>> >>> /usr/local/include/odbcStubs.h >>> >>> /usr/local/include/pqStubs.h >>> >>> /usr/local/include/tcl.h >>> >>> /usr/local/include/tclDecls.h >>> >>> /usr/local/include/tclOO.h >>> >>> /usr/local/include/tclOODecls.h >>> >>> /usr/local/include/tclPlatDecls.h >>> >>> /usr/local/include/tclThread.h >>> >>> /usr/local/include/tclTomMath.h >>> >>> /usr/local/include/tclTomMathDecls.h >>> >>> /usr/local/include/tdbc.h >>> >>> /usr/local/include/tdbcDecls.h >>> >>> /usr/local/include/tdbcInt.h >>> >>> /usr/local/include/tk.h >>> >>> /usr/local/include/tkDecls.h >>> >>> /usr/local/include/tkPlatDecls.h >>> >>> >>> Warning: Unbrewed '.pc' files were found in /usr/local/lib/pkgconfig. >>> >>> If you didn't put them there on purpose they could cause problems when >>> >>> building Homebrew formulae, and may need to be deleted. >>> >>> >>> Unexpected '.pc' files: >>> >>> /usr/local/lib/pkgconfig/tcl.pc >>> >>> /usr/local/lib/pkgconfig/tk.pc >>> >>> >>> Warning: Unbrewed static libraries were found in /usr/local/lib. >>> >>> If you didn't put them there on purpose they could cause problems when >>> >>> building Homebrew formulae, and may need to be deleted. >>> >>> >>> Unexpected static libraries: >>> >>> /usr/local/lib/libtclstub8.6.a >>> >>> /usr/local/lib/libtkstub8.6.a >>> >>> >>> Warning: You have unlinked kegs in your Cellar. >>> >>> Leaving kegs unlinked can lead to build-trouble and cause formulae that >>> depend on >>> >>> those kegs to fail to run properly once built. Run `brew link` on these: >>> >>> ffmpeg >>> >>> ghostscript >>> >>> >>> Warning: Homebrew's "sbin" was not found in your PATH but you have >>> installed >>> >>> formulae that put executables in /usr/local/sbin. >>> >>> Consider setting your PATH for example like so: >>> >>> echo 'export PATH="/usr/local/sbin:$PATH"' >> ~/.zshrc >>> >>> >>> Warning: Broken symlinks were found. Remove them with `brew cleanup`: >>> >>> /usr/local/bin/git-trac >>> >>> /usr/local/share/ghostscript/9.27/Resource/Font/wasy10.pfb >>> >>> /usr/local/share/ghostscript/9.27/Resource/Font/wasy5.pfb >>> >>> /usr/local/share/ghostscript/9.27/Resource/Font/wasy6.pfb >>> >>> /usr/local/share/ghostscript/9.27/Resource/Font/wasy7.pfb >>> >>> /usr/local/share/ghostscript/9.27/Resource/Font/wasy8.pfb >>> >>> /usr/local/share/ghostscript/9.27/Resource/Font/wasy9.pfb >>> >>> /usr/local/share/ghostscript/9.27/Resource/Font/wasyb10.pfb >>> >>> /usr/local/share/man/man1/brew-cask.1 >>> >>> /usr/local/share/zsh/site-functions/_brew_cask >>> >>> trevorkarn@Trevors-MacBook-Air sage % brew cleanup >>> >>> Removing: /usr/local/Cellar/gettext/0.20.1... (1,899 files, 18.5MB) >>> >>> Removing: /usr/local/Cellar/gmp/6.1.2_2... (18 files, 3.1MB) >>> >>> Removing: /usr/local/Cellar/gnutls/3.6.9... (1,227 files, 9.9MB) >>> >>> Removing: /usr/local/Cellar/icu4c/64.2... (257 files, 69.2MB) >>> >>> Removing: /usr/local/Cellar/libevent/2.1.11... (1,063 files, 5MB) >>> >>> Removing: /usr/local/Cellar/libffi/3.2.1... (16 files, 296.8KB) >>> >>> Removing: /usr/local/Cellar/libidn2/2.2.0_1... (70 files, 700.9KB) >>> >>> Removing: /usr/local/Cellar/libtasn1/4.14... (59 files, 384KB) >>> >>> Removing: /usr/local/Cellar/nettle/3.4.1... (85 files, 2MB) >>> >>> Error: Interrupted system call @ dir_initialize - /usr/local/Cellar/opus >>> >>> trevorkarn@Trevors-MacBook-Air sage % ;2D >>> >>> Best Regards, >>> >>> Trevor Karn >>> >>> >>> On Mon, Feb 8, 2021 at 8:38 PM Zachary Scherr <[email protected]> wrote: >>> >>>> In your original config.log, it looked like sage was picking up its own >>>> fortran: >>>> >>>> configure:11991: gfortran has already been installed by SageMath >>>> configure:39396: result: gfortran-9.2.0: >>>> already installed as an SPKG >>>> >>>> The current version of gfortran from homebrew is 10.2.0 version 3 >>>> >>>> GNU Fortran (Homebrew GCC 10.2.0_3) 10.2.0 >>>> Copyright (C) 2020 Free Software Foundation, Inc. >>>> This is free software; see the source for copying conditions. There is >>>> NO >>>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR >>>> PURPOSE. >>>> >>>> ./configure should be picking up homebrew's gfortran (installed with >>>> gcc), and it seems from your config.log file that you do have homebrew and >>>> therefore you should have the most recent gfortran. >>>> Do you have the newest config.log file from after running make >>>> distclean? You may also want to try running >>>> >>>> brew doctor >>>> >>>> to see if there is something wrong with your homebrew. >>>> On Monday, February 8, 2021 at 9:27:11 PM UTC-5 Trevor Karn wrote: >>>> >>>>> Unfortunately, that did not seem to work. >>>>> >>>>> Here are the last few lines of the terminal output and I've attached >>>>> the numpy log. >>>>> >>>>> [singular-4.1.1p2.p0] real 28m38.843s >>>>> >>>>> [singular-4.1.1p2.p0] user 24m18.545s >>>>> >>>>> [singular-4.1.1p2.p0] sys 3m53.423s >>>>> >>>>> [singular-4.1.1p2.p0] Copying package files from temporary location >>>>> /Users/trevorkarn/Applications/sage/local/var/tmp/sage/build/singular-4.1.1p2.p0/inst >>>>> >>>>> to /Users/trevorkarn/Applications/sage/local >>>>> >>>>> [singular-4.1.1p2.p0] Successfully installed singular-4.1.1p2.p0 >>>>> >>>>> [singular-4.1.1p2.p0] Deleting temporary build directory >>>>> >>>>> [singular-4.1.1p2.p0] >>>>> /Users/trevorkarn/Applications/sage/local/var/tmp/sage/build/singular-4.1.1p2.p0 >>>>> >>>>> [singular-4.1.1p2.p0] Finished installing singular-4.1.1p2.p0 >>>>> >>>>> make[2]: *** [all-build] Error 2 >>>>> >>>>> >>>>> real 182m14.796s >>>>> >>>>> user 355m33.883s >>>>> >>>>> sys 72m32.388s >>>>> >>>>> *************************************************************** >>>>> >>>>> Error building Sage. >>>>> >>>>> >>>>> The following package(s) may have failed to build (not necessarily >>>>> >>>>> during this run of 'make all-build'): >>>>> >>>>> >>>>> * package: numpy-1.19.4 >>>>> >>>>> last build time: Feb 8 19:48 >>>>> >>>>> log file: >>>>> /Users/trevorkarn/Applications/sage/logs/pkgs/numpy-1.19.4.log >>>>> >>>>> build directory: >>>>> /Users/trevorkarn/Applications/sage/local/var/tmp/sage/build/numpy-1.19.4 >>>>> >>>>> >>>>> It is safe to delete any log files and build directories, but they >>>>> >>>>> contain information that is helpful for debugging build problems. >>>>> >>>>> WARNING: If you now run 'make' again, the build directory of the >>>>> >>>>> same version of the package will, by default, be deleted. Set the >>>>> >>>>> environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. >>>>> >>>>> >>>>> make[1]: *** [all-build] Error 1 >>>>> >>>>> make: *** [build] Error 2 >>>>> >>>>> trevorkarn@Trevors-MacBook-Air sage % >>>>> >>>>> >>>>> Best Regards, >>>>> >>>>> Trevor Karn >>>>> >>>>> >>>>> On Mon, Feb 8, 2021 at 1:56 PM Zachary Scherr <[email protected]> >>>>> wrote: >>>>> >>>>>> yea, something seems messed up. For example, the numpy problem was >>>>>> fixed on beta 6 and should still be fixed in beta 7. It looks like >>>>>> somehow >>>>>> you have old files hanging around which are causing problems. Hopefully >>>>>> make distclean will clean everything and let you start fresh. >>>>>> >>>>>> On Monday, February 8, 2021 at 2:25:16 PM UTC-5 Trevor Karn wrote: >>>>>> >>>>>>> I must have typed it wrong. The second option you gave failed on >>>>>>> numpy, but I tried the first option again, and it is compiling. >>>>>>> >>>>>>> Best Regards, >>>>>>> >>>>>>> Trevor Karn >>>>>>> >>>>>>> >>>>>>> On Mon, Feb 8, 2021 at 11:31 AM Zachary Scherr <[email protected]> >>>>>>> wrote: >>>>>>> >>>>>>>> Are you sure you typed it correctly? Maybe try running >>>>>>>> >>>>>>>> ./bootstrap >>>>>>>> >>>>>>>> to make sure that the make targets are in order. >>>>>>>> >>>>>>>> On Monday, February 8, 2021 at 12:27:01 PM UTC-5 Trevor Karn wrote: >>>>>>>> >>>>>>>>> I tried make distclean and got an error “make: *** No rule to make >>>>>>>>> target ‘distclean’. Stop.” >>>>>>>>> >>>>>>>>> So I tried your second suggestion and it seems to be working so >>>>>>>>> far, but it is still compiling. >>>>>>>>> >>>>>>>>> On Mon, Feb 8, 2021 at 10:29 AM Zachary Scherr <[email protected]> >>>>>>>>> wrote: >>>>>>>>> >>>>>>>>>> Probably the thing to try would be: >>>>>>>>>> >>>>>>>>>> make distclean >>>>>>>>>> >>>>>>>>>> and then you can build from scratch via: >>>>>>>>>> >>>>>>>>>> ./bootstrap >>>>>>>>>> source .homebrew-build-env >>>>>>>>>> ./configure >>>>>>>>>> make -j4 build >>>>>>>>>> >>>>>>>>>> But if you want to try cleaning wheel first before starting from >>>>>>>>>> scratch, you could just try >>>>>>>>>> >>>>>>>>>> make wheel-clean >>>>>>>>>> make -j4 build >>>>>>>>>> >>>>>>>>>> but it might be better to clean everything and start from scratch. >>>>>>>>>> >>>>>>>>>> On Monday, February 8, 2021 at 10:59:05 AM UTC-5 Trevor Karn >>>>>>>>>> wrote: >>>>>>>>>> >>>>>>>>>>> I do not see pep425tags.py in that directory. >>>>>>>>>>> >>>>>>>>>>> trevorkarn@Trevors-MacBook-Air sage % cd >>>>>>>>>>> /Users/trevorkarn/Applications/sage/local/lib/python3.9/site-packages/wheel/ >>>>>>>>>>> >>>>>>>>>>> trevorkarn@Trevors-MacBook-Air wheel % ls >>>>>>>>>>> >>>>>>>>>>> __init__.py __pycache__ cli metadata.py util.py wheelfile.py >>>>>>>>>>> >>>>>>>>>>> __main__.py bdist_wheel.py macosx_libfile.py pkginfo.py vendored >>>>>>>>>>> >>>>>>>>>>> Is there a way to clean the build environment? >>>>>>>>>>> >>>>>>>>>>> Best Regards, >>>>>>>>>>> >>>>>>>>>>> Trevor Karn >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> On Mon, Feb 8, 2021 at 9:54 AM Dima Pasechnik <[email protected]> >>>>>>>>>>> wrote: >>>>>>>>>>> >>>>>>>>>>>> the only explanation for pep425tags.py would be an unclean build >>>>>>>>>>>> environment - e.g. weird env vars set, or strange stuff in PATH. >>>>>>>>>>>> >>>>>>>>>>>> On Mon, Feb 8, 2021 at 3:51 PM Zachary Scherr <[email protected]> >>>>>>>>>>>> wrote: >>>>>>>>>>>> > >>>>>>>>>>>> > and do you see that pep425tags.py file in that directory? >>>>>>>>>>>> > >>>>>>>>>>>> > On Monday, February 8, 2021 at 10:21:09 AM UTC-5 Trevor Karn >>>>>>>>>>>> wrote: >>>>>>>>>>>> >> >>>>>>>>>>>> >> The only contents of the file you pointed me towards are >>>>>>>>>>>> >> >>>>>>>>>>>> >> __version__ = '0.36.2' >>>>>>>>>>>> >> >>>>>>>>>>>> >> Best Regards, >>>>>>>>>>>> >> >>>>>>>>>>>> >> Trevor Karn >>>>>>>>>>>> >> >>>>>>>>>>>> >> >>>>>>>>>>>> >> On Mon, Feb 8, 2021 at 9:09 AM Zachary Scherr < >>>>>>>>>>>> [email protected]> wrote: >>>>>>>>>>>> >>> >>>>>>>>>>>> >>> I really don't understand. The Cython log file shows that >>>>>>>>>>>> the problem is in >>>>>>>>>>>> >>> >>>>>>>>>>>> >>> >>>>>>>>>>>> /Users/trevorkarn/Applications/sage/local/lib/python3.9/site-packages/wheel/pep425tags.py >>>>>>>>>>>> >>> >>>>>>>>>>>> >>> I could be mistaken, but I don't think pep425tags.py has >>>>>>>>>>>> been a part of the wheel package for a while now. Certainly when >>>>>>>>>>>> I looked >>>>>>>>>>>> at wheel on my sage there was no such file. >>>>>>>>>>>> >>> >>>>>>>>>>>> >>> Can you go to your >>>>>>>>>>>> "/Users/trevorkarn/Applications/sage/local/lib/python3.9/site-packages/wheel/" >>>>>>>>>>>> >>>>>>>>>>>> directory and take a look at __init__.py. Does the version say >>>>>>>>>>>> 0.36.2? >>>>>>>>>>>> >>> >>>>>>>>>>>> >>> On Monday, February 8, 2021 at 9:32:20 AM UTC-5 Trevor Karn >>>>>>>>>>>> wrote: >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> Here is what I get. It seems like it is the same as yours? >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> trevorkarn@Trevors-MacBook-Air sage % brew info python3 >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> [email protected]: stable 3.9.1 >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> Interpreted, interactive, object-oriented programming >>>>>>>>>>>> language >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> https://www.python.org/ >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> /usr/local/Cellar/[email protected]/3.9.1_8 (8,665 files, >>>>>>>>>>>> 129.4MB) * >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> Built from source on 2021-02-05 at 16:39:31 >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> From: >>>>>>>>>>>> https://github.com/Homebrew/homebrew-core/blob/HEAD/Formula/[email protected] >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> License: Python-2.0 >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> ==> Dependencies >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> Build: pkg-config ✔ >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> Required: gdbm ✔, [email protected] ✔, readline ✔, sqlite ✔, >>>>>>>>>>>> tcl-tk ✔, xz ✔ >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> ==> Caveats >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> Python has been installed as >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> /usr/local/bin/python3 >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> Unversioned symlinks `python`, `python-config`, `pip` etc. >>>>>>>>>>>> pointing to >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> `python3`, `python3-config`, `pip3` etc., respectively, >>>>>>>>>>>> have been installed into >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> /usr/local/opt/[email protected]/libexec/bin >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> You can install Python packages with >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> pip3 install <package> >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> They will install into the site-package directory >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> /usr/local/lib/python3.9/site-packages >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> See: https://docs.brew.sh/Homebrew-and-Python >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> ==> Analytics >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> install: 755,419 (30 days), 2,396,024 (90 days), 2,995,387 >>>>>>>>>>>> (365 days) >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> install-on-request: 244,063 (30 days), 714,665 (90 days), >>>>>>>>>>>> 799,812 (365 days) >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> build-error: 0 (30 days) >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> Best Regards, >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> Trevor Karn >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> >>>>>>>>>>>> >>>> On Mon, Feb 8, 2021 at 8:17 AM Dima Pasechnik < >>>>>>>>>>>> [email protected]> wrote: >>>>>>>>>>>> >>>>> >>>>>>>>>>>> >>>>> Could it be that you need to update your Homebrew (?) >>>>>>>>>>>> python3 package? >>>>>>>>>>>> >>>>> What version do you have now? >>>>>>>>>>>> >>>>> E.g. on a box where the latest Sage builds I have >>>>>>>>>>>> >>>>> >>>>>>>>>>>> >>>>> % brew info python3 >>>>>>>>>>>> >>>>> >>>>>>>>>>>> >>>>> [email protected]: stable 3.9.1 (bottled) >>>>>>>>>>>> >>>>> Interpreted, interactive, object-oriented programming >>>>>>>>>>>> language >>>>>>>>>>>> >>>>> https://www.python.org/ >>>>>>>>>>>> >>>>> /usr/local/Cellar/[email protected]/3.9.1_8 (4,057 files, >>>>>>>>>>>> 67.8MB) * >>>>>>>>>>>> >>>>> Poured from bottle on 2021-02-06 at 10:13:24 >>>>>>>>>>>> >>>>> From: >>>>>>>>>>>> https://github.com/Homebrew/homebrew-core/blob/HEAD/Formula/[email protected] >>>>>>>>>>>> >>>>> >>>>>>>>>>>> >>>>> >>>>>>>>>>>> >>>>> On Mon, Feb 8, 2021 at 1:53 PM Trevor Karn < >>>>>>>>>>>> [email protected]> wrote: >>>>>>>>>>>> >>>>> > >>>>>>>>>>>> >>>>> > Ah I see, thanks for explaining. >>>>>>>>>>>> >>>>> > >>>>>>>>>>>> >>>>> > Here is my top-level config.log. >>>>>>>>>>>> >>>>> > >>>>>>>>>>>> >>>>> > Best Regards, >>>>>>>>>>>> >>>>> > >>>>>>>>>>>> >>>>> > Trevor Karn >>>>>>>>>>>> >>>>> > >>>>>>>>>>>> >>>>> > >>>>>>>>>>>> >>>>> > On Mon, Feb 8, 2021 at 7:09 AM Dima Pasechnik < >>>>>>>>>>>> [email protected]> wrote: >>>>>>>>>>>> >>>>> >> >>>>>>>>>>>> >>>>> >> >>>>>>>>>>>> >>>>> >> >>>>>>>>>>>> >>>>> >> On Mon, 8 Feb 2021, 13:02 Trevor Karn, < >>>>>>>>>>>> [email protected]> wrote: >>>>>>>>>>>> >>>>> >>> >>>>>>>>>>>> >>>>> >>> Thanks for sending that link. I am confused though, >>>>>>>>>>>> because it says a fix was issued. Does that mean it should work >>>>>>>>>>>> now? >>>>>>>>>>>> >>>>> >> >>>>>>>>>>>> >>>>> >> >>>>>>>>>>>> >>>>> >> sorry, I was not clear. What I meant to say that it >>>>>>>>>>>> appears to be a well-known issue in the Python@macOS universe, >>>>>>>>>>>> >>>>> >> and lately all seems to be OK with Sage. >>>>>>>>>>>> >>>>> >> >>>>>>>>>>>> >>>>> >> To figure out exactly goes wrong in your case, we need >>>>>>>>>>>> to know where Python3 used in Sage is coming from. >>>>>>>>>>>> >>>>> >> Please post the top-level config.log >>>>>>>>>>>> >>>>> >> >>>>>>>>>>>> >>>>> >> >>>>>>>>>>>> >>>>> >>> >>>>>>>>>>>> >>>>> >>> And yes, I am on the most recent develop branch >>>>>>>>>>>> >>>>> >>> >>>>>>>>>>>> >>>>> >>> On Mon, Feb 8, 2021 at 5:42 AM Dima Pasechnik < >>>>>>>>>>>> [email protected]> wrote: >>>>>>>>>>>> >>>>> >>>> >>>>>>>>>>>> >>>>> >>>> This seems to be well-known issue, see e.g >>>>>>>>>>>> >>>>> >>>> https://github.com/pypa/virtualenv/issues/2027 >>>>>>>>>>>> >>>>> >>>> >>>>>>>>>>>> >>>>> >>>> Are you on the most recent develop branch >>>>>>>>>>>> (9.3.beta7)? >>>>>>>>>>>> >>>>> >>>> >>>>>>>>>>>> >>>>> >>>> On Mon, Feb 8, 2021 at 9:20 AM Trevor Karn < >>>>>>>>>>>> [email protected]> wrote: >>>>>>>>>>>> >>>>> >>>> > >>>>>>>>>>>> >>>>> >>>> > Hi, >>>>>>>>>>>> >>>>> >>>> > >>>>>>>>>>>> >>>>> >>>> > I'm trying to build Sage from the source code. I >>>>>>>>>>>> cloned it from git, and tried to build from the develop branch >>>>>>>>>>>> using make >>>>>>>>>>>> from the sage directory. I ran into trouble building cython. The >>>>>>>>>>>> error >>>>>>>>>>>> message suggested that I email this group. Does anyone have any >>>>>>>>>>>> advice on >>>>>>>>>>>> how to proceed? >>>>>>>>>>>> >>>>> >>>> > >>>>>>>>>>>> >>>>> >>>> > I am using macOS Big Sur 11.2 on a MacBook Air. >>>>>>>>>>>> >>>>> >>>> > >>>>>>>>>>>> >>>>> >>>> > The log file is attached, this is from a second >>>>>>>>>>>> run - it failed once, and I tried running make a second time >>>>>>>>>>>> without any >>>>>>>>>>>> changes and this is the log from the second run, which returns the >>>>>>>>>>>> same >>>>>>>>>>>> error just without all of the info before it (eg. the flint >>>>>>>>>>>> installation). >>>>>>>>>>>> >>>>> >>>> > >>>>>>>>>>>> >>>>> >>>> > Thanks so much. >>>>>>>>>>>> >>>>> >>>> > >>>>>>>>>>>> >>>>> >>>> > Best, >>>>>>>>>>>> >>>>> >>>> > Trevor >>>>>>>>>>>> >>>>> >>>> > >>>>>>>>>>>> >>>>> >>>> > -- >>>>>>>>>>>> >>>>> >>>> > You received this message because you are >>>>>>>>>>>> subscribed to the Google Groups "sage-devel" group. >>>>>>>>>>>> >>>>> >>>> > To unsubscribe from this group and stop receiving >>>>>>>>>>>> emails from it, send an email to >>>>>>>>>>>> [email protected]. >>>>>>>>>>>> >>>>> >>>> > To view this discussion on the web visit >>>>>>>>>>>> https://groups.google.com/d/msgid/sage-devel/1c93ec2e-86bd-45f0-bba0-cc254a392305n%40googlegroups.com >>>>>>>>>>>> . >>>>>>>>>>>> >>>>> >>>> >>>>>>>>>>>> >>>>> >>>> -- >>>>>>>>>>>> >>>>> >>>> You received this message because you are subscribed >>>>>>>>>>>> to a topic in the Google Groups "sage-devel" group. >>>>>>>>>>>> >>>>> >>>> To unsubscribe from this topic, visit >>>>>>>>>>>> https://groups.google.com/d/topic/sage-devel/TmbLnmwz2mg/unsubscribe >>>>>>>>>>>> . >>>>>>>>>>>> >>>>> >>>> To unsubscribe from this group and all its topics, >>>>>>>>>>>> send an email to [email protected]. >>>>>>>>>>>> >>>>> >>>> To view this discussion on the web visit >>>>>>>>>>>> https://groups.google.com/d/msgid/sage-devel/CAAWYfq3CFFAYzUtNnSrt_RPKW7X_p8j_VXGtZbKLWG%2BST%3DCO%2BQ%40mail.gmail.com >>>>>>>>>>>> . >>>>>>>>>>>> >>>>> >>> >>>>>>>>>>>> >>>>> >>> -- >>>>>>>>>>>> >>>>> >>> Best, >>>>>>>>>>>> >>>>> >>> >>>>>>>>>>>> >>>>> >>> Trevor >>>>>>>>>>>> >>>>> >>> >>>>>>>>>>>> >>>>> >>> -- >>>>>>>>>>>> >>>>> >>> You received this message because you are subscribed >>>>>>>>>>>> to the Google Groups "sage-devel" group. >>>>>>>>>>>> >>>>> >>> To unsubscribe from this group and stop receiving >>>>>>>>>>>> emails from it, send an email to >>>>>>>>>>>> [email protected]. >>>>>>>>>>>> >>>>> >>> To view this discussion on the web visit >>>>>>>>>>>> https://groups.google.com/d/msgid/sage-devel/CAJ6VCMAVGG57CHovd7zoXa0C3Nxsr3WfXi0FWwapKrDfup7_sA%40mail.gmail.com >>>>>>>>>>>> . >>>>>>>>>>>> >>>>> >> >>>>>>>>>>>> >>>>> >> -- >>>>>>>>>>>> >>>>> >> You received this message because you are subscribed >>>>>>>>>>>> to a topic in the Google Groups "sage-devel" group. >>>>>>>>>>>> >>>>> >> To unsubscribe from this topic, visit >>>>>>>>>>>> https://groups.google.com/d/topic/sage-devel/TmbLnmwz2mg/unsubscribe >>>>>>>>>>>> . >>>>>>>>>>>> >>>>> >> To unsubscribe from this group and all its topics, >>>>>>>>>>>> send an email to [email protected]. >>>>>>>>>>>> >>>>> >> To view this discussion on the web visit >>>>>>>>>>>> https://groups.google.com/d/msgid/sage-devel/CAAWYfq026cNP9FTmBySPskZZoc%2BH4ykTQO7je6TW4YTkirg_qw%40mail.gmail.com >>>>>>>>>>>> . >>>>>>>>>>>> >>>>> > >>>>>>>>>>>> >>>>> > -- >>>>>>>>>>>> >>>>> > You received this message because you are subscribed to >>>>>>>>>>>> the Google Groups "sage-devel" group. >>>>>>>>>>>> >>>>> > To unsubscribe from this group and stop receiving >>>>>>>>>>>> emails from it, send an email to >>>>>>>>>>>> [email protected]. >>>>>>>>>>>> >>>>> > To view this discussion on the web visit >>>>>>>>>>>> https://groups.google.com/d/msgid/sage-devel/CAJ6VCMDJEN7KzDmvB0x0GDrXiQrK3F_e_eBZvSJf-JxVre0n-Q%40mail.gmail.com >>>>>>>>>>>> . >>>>>>>>>>>> >>>>> >>>>>>>>>>>> >>>>> -- >>>>>>>>>>>> >>>>> You received this message because you are subscribed to a >>>>>>>>>>>> topic in the Google Groups "sage-devel" group. >>>>>>>>>>>> >>>>> To unsubscribe from this topic, visit >>>>>>>>>>>> https://groups.google.com/d/topic/sage-devel/TmbLnmwz2mg/unsubscribe >>>>>>>>>>>> . >>>>>>>>>>>> >>>>> To unsubscribe from this group and all its topics, send >>>>>>>>>>>> an email to [email protected]. >>>>>>>>>>>> >>>>> >>>>>>>>>>>> >>>>> To view this discussion on the web visit >>>>>>>>>>>> https://groups.google.com/d/msgid/sage-devel/CAAWYfq3meWN5AWip9BG5GzJ%3DFfLvoHKFrpS6Ezmq4X2GWH8mQw%40mail.gmail.com >>>>>>>>>>>> . >>>>>>>>>>>> >>> >>>>>>>>>>>> >>> -- >>>>>>>>>>>> >>> You received this message because you are subscribed to a >>>>>>>>>>>> topic in the Google Groups "sage-devel" group. >>>>>>>>>>>> >>> To unsubscribe from this topic, visit >>>>>>>>>>>> https://groups.google.com/d/topic/sage-devel/TmbLnmwz2mg/unsubscribe >>>>>>>>>>>> . >>>>>>>>>>>> >>> To unsubscribe from this group and all its topics, send an >>>>>>>>>>>> email to [email protected]. >>>>>>>>>>>> >>> >>>>>>>>>>>> >>> To view this discussion on the web visit >>>>>>>>>>>> https://groups.google.com/d/msgid/sage-devel/c02796d9-9057-41e2-829f-eeb933132d42n%40googlegroups.com >>>>>>>>>>>> . >>>>>>>>>>>> > >>>>>>>>>>>> > -- >>>>>>>>>>>> > You received this message because you are subscribed to the >>>>>>>>>>>> Google Groups "sage-devel" group. >>>>>>>>>>>> > To unsubscribe from this group and stop receiving emails from >>>>>>>>>>>> it, send an email to [email protected]. >>>>>>>>>>>> >>>>>>>>>>> > To view this discussion on the web visit >>>>>>>>>>>> https://groups.google.com/d/msgid/sage-devel/bd636baa-f6b1-42f7-866b-77ba0af40b6en%40googlegroups.com >>>>>>>>>>>> . >>>>>>>>>>>> >>>>>>>>>>>> -- >>>>>>>>>>>> You received this message because you are subscribed to a topic >>>>>>>>>>>> in the Google Groups "sage-devel" group. >>>>>>>>>>>> To unsubscribe from this topic, visit >>>>>>>>>>>> https://groups.google.com/d/topic/sage-devel/TmbLnmwz2mg/unsubscribe >>>>>>>>>>>> . >>>>>>>>>>>> To unsubscribe from this group and all its topics, send an >>>>>>>>>>>> email to [email protected]. >>>>>>>>>>>> >>>>>>>>>>> To view this discussion on the web visit >>>>>>>>>>>> https://groups.google.com/d/msgid/sage-devel/CAAWYfq08zf6vp0LfT%2BGfAy25ML95cxTyxAQho9gB_UdGjqpHFA%40mail.gmail.com >>>>>>>>>>>> . >>>>>>>>>>>> >>>>>>>>>>> -- >>>>>>>>>> You received this message because you are subscribed to a topic >>>>>>>>>> in the Google Groups "sage-devel" group. >>>>>>>>>> To unsubscribe from this topic, visit >>>>>>>>>> https://groups.google.com/d/topic/sage-devel/TmbLnmwz2mg/unsubscribe >>>>>>>>>> . >>>>>>>>>> To unsubscribe from this group and all its topics, send an email >>>>>>>>>> to [email protected]. >>>>>>>>>> >>>>>>>>> To view this discussion on the web visit >>>>>>>>>> https://groups.google.com/d/msgid/sage-devel/c6d5aec3-7f1c-4dc7-a94b-d1e2ab5fdf53n%40googlegroups.com >>>>>>>>>> >>>>>>>>>> <https://groups.google.com/d/msgid/sage-devel/c6d5aec3-7f1c-4dc7-a94b-d1e2ab5fdf53n%40googlegroups.com?utm_medium=email&utm_source=footer> >>>>>>>>>> . >>>>>>>>>> >>>>>>>>> -- >>>>>>>>> Best, >>>>>>>>> >>>>>>>>> Trevor >>>>>>>>> >>>>>>>> -- >>>>>>>> You received this message because you are subscribed to a topic in >>>>>>>> the Google Groups "sage-devel" group. >>>>>>>> To unsubscribe from this topic, visit >>>>>>>> https://groups.google.com/d/topic/sage-devel/TmbLnmwz2mg/unsubscribe >>>>>>>> . >>>>>>>> To unsubscribe from this group and all its topics, send an email to >>>>>>>> [email protected]. >>>>>>>> >>>>>>> To view this discussion on the web visit >>>>>>>> https://groups.google.com/d/msgid/sage-devel/47b9954f-e37a-4a81-a7f4-7747b8139e5an%40googlegroups.com >>>>>>>> >>>>>>>> <https://groups.google.com/d/msgid/sage-devel/47b9954f-e37a-4a81-a7f4-7747b8139e5an%40googlegroups.com?utm_medium=email&utm_source=footer> >>>>>>>> . >>>>>>>> >>>>>>> -- >>>>>> You received this message 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this discussion on the web visit >>>> https://groups.google.com/d/msgid/sage-devel/aafdb9d9-fdc8-4761-864d-051ee78536b3n%40googlegroups.com >>>> >>>> <https://groups.google.com/d/msgid/sage-devel/aafdb9d9-fdc8-4761-864d-051ee78536b3n%40googlegroups.com?utm_medium=email&utm_source=footer> >>>> . >>>> >>> -- >> You received this message because you are subscribed to a topic in the >> Google Groups "sage-devel" group. >> To unsubscribe from this topic, visit >> https://groups.google.com/d/topic/sage-devel/TmbLnmwz2mg/unsubscribe. >> To unsubscribe from this group and all its topics, send an email to >> [email protected]. >> > To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-devel/34970320-117f-406c-9e28-9c8fbb7a87d6n%40googlegroups.com >> >> <https://groups.google.com/d/msgid/sage-devel/34970320-117f-406c-9e28-9c8fbb7a87d6n%40googlegroups.com?utm_medium=email&utm_source=footer> >> . >> > -- You received this message because you are subscribed to the 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To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-devel/b66c5f47-43b6-4b27-8d3f-b0962b57dd75n%40googlegroups.com.
