#12299: Upgrade Jmol to 12.3.27, Advance Jmol Interactive Features in Flask
Notebook
--------------------------------------------------------------+-------------
       Reporter:  gutow                                       |         Owner:  
jason, mpatel, was                                                       
           Type:  enhancement                                 |        Status:  
needs_review                                                             
       Priority:  major                                       |     Milestone:  
sage-pending                                                             
      Component:  notebook                                    |    Resolution:  
                                                                         
       Keywords:  Jmol, 3D, notebook                          |   Work issues:  
                                                                         
Report Upstream:  Fixed upstream, in a later stable release.  |     Reviewers:  
Karl-Dieter Crisman, Steven Trogdon, Punarbasu Purkayastha, John Palmieri
        Authors:  Jonathan Gutow                              |     Merged in:  
                                                                         
   Dependencies:  #11080,#11078,#11503,#13121                 |      Stopgaps:  
                                                                         
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Comment (by ddrake):

 Replying to [comment:170 ppurka]:
 > The `#!/usr/bin/env bash` syntax is
 [http://en.wikipedia.org/wiki/Shebang_(Unix)#Portability recommended for
 portability].
 >
 > As for the bash script, are you looking at the output of the bash script
 or only at the return status.

 There's a doctest in sage/interfaces/jmoldata.py (line 90) that looks like
 this:
 {{{
 result = subprocess.call([testjavapath],stdout=jout)
 }}}
 [http://docs.python.org/library/subprocess.html#subprocess.call The
 documentation for subprocess.call] says it returns the returncode
 attribute, but the current script AFAICT always returns 0. I think we
 should be using `check_output` if we want the output.  We can do either
 thing, but it seems like right now the script and the doctest are not
 consistent.



 > In this case, the script can be shortened significantly
 > {{{
 > #!/usr/bin/env bash
 > type -atp java > /dev/null && java -version 2>&1 | grep
 version.*[1]\.[567] > /dev/null
 > echo $?
 > }}}

 That's certainly an option, but perhaps the verbose-but-obvious script
 would be easier to maintain, in case someone who's not much of a bash
 expert needs to change it. :)

-- 
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/12299#comment:172>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica, 
and MATLAB

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