ed office at Diamond House, Harwell Science and
> Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom
>
>
> --
>
> To unsubscribe from the CCP4BB list, click the following link:
> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED
of the meeting will only let the most dedicated
scientists from the US attend.
I hope to see many of you on Saturday.
Andreas
--
<https://www.dectris.com>
Andreas Förster, Ph.D.
Application Scientist Crystallography, Area Sales Manager Asia & Pacific
Phone: +41 56 500 21 00 | Direct:
rrect. These minimum ranges for data collection rely on the crystal being
> pre-oriented, which is unheard-of these days, although they can help if
> someone is nagging you to get off the beam line or if your diffraction
> fades quickly. Going for 180 degrees always makes sense for a well-behaved
des symmetry and radiation damage?
>
> Thanks
>
> --
>
> To unsubscribe from the CCP4BB list, click the following link:
> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1
>
--
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Andreas Förster, Ph.D.
ain information about the
> x-ray absorbed dose?
>
>
>
> Thanks
>
> --
>
> To unsubscribe from the CCP4BB list, click the following link:
> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB=1
>
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An
ge.
> Diamond Light Source Limited (company no. 4375679). Registered in England
> and Wales with its registered office at Diamond House, Harwell Science and
> Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom
>
>
> ##
Hi Andreas,
>
> On Thu, Mar 19, 2020 at 07:06:32AM +0100, Andreas Förster wrote:
> > - The link to the raw data can be found inside the mmCIF file under
> > _pdbx_related_exp_data_set.data_reference. Whether it's also shown on
> one
> > of the PDB sites is up to the designers
As someone who's done this (for one structure of minor significance), I
would like to make a few comments:
- I highly encourage deposition of raw data. Why would you not? Now that
many labs are shut is the time to do it for all these datasets hiding
somewhere on abandoned hard disk. These
A very good point, Gerard, but maybe too late. It seems to me that a
lot of microscopists have already given up this abundantly discussed
question. They just call everything atomic resolution irrespective of
whatever numerical value they arrive at by whatever means.
All best.
Andreas
Dear Lindsey,
I'm all with Nukri on this one. 12 Se atoms (whose incorporation you've
shown) should be plenty to give you enough anomalous signal to phase the
data and solve the structure. That's why I would do the simplest
experiment first. Collect 360° of data at the peak energy, maybe a bit
>
> To unsubscribe from the CCP4BB list, click the following link:
> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB=1
>
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Andreas Förster, Ph.D.
Application Scientist Crystallography
Phone: +41 56 500 21 00 | Direct: +41
ad of the Centre for X-ray Structure Analysis
> Faculty of Chemistry
> University of Vienna
>
> Phone: +43-1-4277-70202
>
> GPG Key ID = A46BEE1A
>
> ####
>
> To unsubscribe from the CCP4BB list, click the fol
Would it be fair to call it CCP40 now?
Andreas
On Mon, Jun 3, 2019 at 4:37 PM Paula Salgado
wrote:
>
>
> This year, CCP4 turns 40 and is celebrating in style with an event in
> London. CCP4 has a strong focus on training the new generation of
> crystallographers and developers so, as part
uk/cgi-bin/webadmin?SUBED1=CCP4BB=1
>
> --
>
> To unsubscribe from the CCP4BB list, click the following link:
> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB=1
>
>
> --
>
> UT Southwestern
>
> Medical Center
>
> The future
Yeah, good stuff:
http://www.auspex.de/
All best.
Andreas
On Mon, Mar 25, 2019 at 10:45 AM CCP4BB <
193323b1e616-dmarc-requ...@jiscmail.ac.uk> wrote:
> Even if you can't see them, it may be worthwhile investigating with Auspex
> (Parkhurst, Thorn, Winter & Waterman - sorry, I can't
---
> Aaron Finke
> Staff Scientist, MacCHESS
> Cornell University
> e-mail: af...@cornell.edu
>
>
> --
>
> To unsubscribe from the CCP4BB list, click the following link:
> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUB
Dear Firdous,
get some Mitegen sleeves and test your crystals at RT. Before you establish
diffraction, there’s no need to agonize about cryo-conditions.
Good luck!
Andreas
On Fri, 19 Oct 2018 at 23:57, Firdous Tarique
wrote:
> Dear members
>
> I have got beautiful crystal hits in SaltRx
Hi James,
you’re probably aware of this but you can edit CBF headers in place with
sed. That’s what I do when I make the detector on my diffractometer go
closer than the hardware limit.
All best - Andreas
On Sat, 22 Sep 2018 at 00:51, James Holton
wrote:
> For teaching purposes I have found
Dear Tommi,
DIALS is good with multiple lattices. It might not have given you best
results as part of the Diamond pipeline, but give it a try with the
max_lattices=2 parameter during dials.index and see where it takes you.
That said, you'll end up with worse statistics if you have two
lowing link:
> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB=1
>
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Andreas Förster, Ph.D.
Application Scientist Crystallography, Scientific Sales
Phone: +41 56 500 21 00 | Direct: +41 56 500 21 76 | Email:
andreas.foers...@dectris.com
DECTR
amples and have an idea
> of signal strength?
>
> Regards
> Manoj
>
>
> 2018-04-03 10:55 GMT-04:00 Andreas Förster <andreas.foers...@dectris.com>:
>
>> Dear Manoj,
>>
>> providing your crystals diffract to at least 2.5 Å and the sulfurs are
>>
people who have tried and failed would also be highly
> appreciated.
>
> Thank you
> Manoj Saxena
> University of Puerto Rico
>
>
>
--
<https://www.dectris.com>
Andreas Förster, Ph.D.
MX Application Scientist, Scientific Sales
Phone: +41 56 500 21 00 <+41%2056%205
a few days), I wonder whether
> someone can provide me your solution since this detector has been in market
> for more than a year. Thank you for your help.
>
> Sincerely,
>
> Aidong
>
>
--
<https://www.dectris.com>
Andreas Förster, Ph.D.
MX Application Scientist, Scie
e have recently noticed an issue with our Pilatus (biased pixels/vertical
> lines).
> I was curious as to whether anyone else has seen this or might know what
> could have caused it?
>
> Best,
> John
>
>
>
--
<https://www.dectris.com>
Andreas Förster, Ph.D.
MX Applicati
the error, SHELXE doesn't write phases. How do I get these? (I
could do MR, but there must be a more elegant way...) Better yet, what
might cause the "negative occupancy" error and how do I avoid it?
Thanks and all best.
Andreas
--
<https://www.dectris.com>
Andreas Förster, Ph.D
for the remaining part. But as I
> dont see it, could the rest part be flexible? But again, this is not
> reflected in the R factors (I would then expect low Rfree).
>
> Could it be that I still lack phases (due to partial occupancy of SeMeth
> in N-terminal lobe ) and have to try to ge
generic_close (error_flag)
If you think you can write more efficient read routines for already
supported formats, please contact Kay Diederichs.
All best.
Andreas
--
<https://www.dectris.com>
Andreas Förster, Ph.D.
MX Application Scientist, Scientific Sales
Phone: +41 56 500 2100 |
make the plugin better,
to the benefit of the entire community.
All best and happy data processing
Andreas
--
<https://www.dectris.com>
Andreas Förster, Ph.D.
MX Application Scientist, Scientific Sales
Phone: +41 56 500 2100 | Direct: +41 56 500 2176 | Email:
andreas.foers...@dectr
Hi Charles,
I don't know what multiscale does. Probably the right thing. If the
anomalous signal is weaker after scaling of multiple datasets,
non-isomorphism might be at fault. Try Blend to scale your datasets.
Blend is part of ccp4 and gives good graphical diagnostic feedback.
Andreas
SCREENSAVER - Watch the Earth right on your desktop!
Check it out at http://www.inbox.com/earth
--
Andreas Förster
X-ray Crystallography Facility Manager
Centre for Structural Biology
Imperial College London
Estructura de Macromoleculas
Centro Nacional de Biotecnologia - CSIC
c/Darwin 3
E-28049 Madrid, Spain
tel. (+34) 91 585 4616
http://www.cnb.csic.es/~mjvanraaij
--
Andreas Förster
X-ray Crystallography Facility Manager
Centre for Structural Biology
-Biotecnologia UNIFESP
Laboratório de Biologia Estrutural
Tel.: (12) 3309-9698
Rua Talim 330, Vila Nair
CEP 12231-280
São José dos Campos - SP
--
Andreas Förster
X-ray Crystallograhpy Facility Manager
Centre for Structural Biology
Imperial College London
to please tell me the 3 letter code for p nitrophenyl
phosphate..
--
Regards
Faisal
School of Life Sciences
JNU
--
Andreas Förster
Crystallization and X-ray Facility Manager
Centre for Structural Biology
Imperial College London
crystallography and Nucleic acid chemistry
Max Planck Institute for Biophysical Chemistry
Am Fassberg 11 37077 Göttingen
Germany
--
Andreas Förster
Crystallization and X-ray Facility Manager
Centre for Structural Biology
Imperial College London
--
Andreas Förster
Crystallization and X-ray Facility Manager
Centre for Structural Biology
Imperial College London
of Biophysics
National Institute of Mental Health and Neurosciences
Bengaluru-29, Karnataka
INDIA
E-mail: manjula@gmail.com mailto:manjula@gmail.com
Mobile no:+91-9538553356
http://www.nimhans.kar.nic.in/
https://www.nimhans.kar.nic.in/
--
Andreas Förster
Crystallization
as
described in Wang et al (2004)?. Any input or sharing will be immensely
helpful.
Thanks a lot,
Arko
--
*Arka Chakraborty*
*ibmb (Institut de Biologia Molecular de Barcelona)*/
/*BARCELONA, SPAIN*/
/
--
Andreas Förster
Crystallization and X-ray Facility Manager
of a source of these cuvettes?
Protein Solution doesn't exist anymore
and Wyatt no longer has these.
--
Andreas Förster
Crystallization and X-ray Facility Manager
Centre for Structural Biology
Imperial College London
a fair bit of time on optimization already).
Thanks in advance,
Rhys
--
Andreas Förster
Crystallization and X-ray Facility Manager
Centre for Structural Biology
Imperial College London
,
facilities people can change things and you'd never know until it's too
late...
Ed
-Original Message-
From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of
Andreas Förster
Sent: Thursday, July 24, 2014 10:54 AM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] rigaku micromax 007 cooling
with me?
Thank you.
Andreas
--
Andreas Förster
Crystallization and X-ray Facility Manager
Centre for Structural Biology
Imperial College London
and consequently
ctruncate craps out because of no input file.
This occurs with the temporary directory on NSF and local, and with one
or two mtz files as input.
How can I go beyond this?
Andreas
--
Andreas Förster
Crystallization and X-ray Facility Manager
://www.facebook.com/RCSBPDB
--
Andreas Förster
Crystallization and X-ray Facility Manager
Centre for Structural Biology
Imperial College London
would like to hear if you have had the same
experience and what you think about the Schrodinger policy.
Best wishes,
Mirek
--
Andreas Förster
Crystallization and X-ray Facility Manager
Centre for Structural Biology
Imperial College London
Contact James Foadi.
http://diamond.ac.uk/Beamlines/Mx/I24/Staff/Foadi.html
Andreas
On 29/03/2014 1:21, Alexander Batyuk wrote:
Dear Tassos,
Do you know by chance whether BLEND is available?
Best wishes,
Alex
Thanks again for all the responses to my question about small-molecule
crystallography. I almost regret having sent the student to the
chemist. Trying this at home sounds like a fun afternoon.
On the ccp4 wiki, there was already a section describing how to solve a
small-molecule structure.
to use software X to analyze data in
space group P-43N would be welcome.
Thanks.
Andreas
--
Andreas Förster
Crystallization and X-ray Facility Manager
Centre for Structural Biology
Imperial College London
if anybody has any ideas/thoughts
what could be wrong/done I would greatly appreciate any insight.
Kind regards,
Matic
--
Andreas Förster
Crystallization and X-ray Facility Manager
Centre for Structural Biology
Imperial College London
://www.cnb.csic.es/~mjvanraaij
--
Andreas Förster
Crystallization and X-ray Facility Manager
Centre for Structural Biology
Imperial College London
___
--
Andreas Förster
Crystallization and Xray Facility Manager
Centre for Structural Biology
Imperial College London
through well-thought out mask
- upload any number of datasets (native, SeMet, etc)
- make existence of datasets or datasets themselves public
Any suggestions would be appreciated.
Andreas
--
Andreas Förster
Crystallization and Xray Facility Manager
Centre
that for further analysis and comparisons.
Best wishes.
Martyn
--
Andreas Förster
Crystallization and Xray Facility Manager
Centre for Structural Biology
Imperial College London
the iMosflm web
site, put ipmosflm in my executable directory, and this seems to fix the
problem.
You should get the CCP4 folks to investigate this and propagate a fix.
Cheers,
--
Andreas Förster
Crystallization and Xray Facility Manager
Centre for Structural
doesn't sit on a twofold. It might just remain undefined.
Thanks anyway for all replies.
Andreas
On 13/09/13 17:50, Andreas Förster wrote:
Dear all,
a structure I'm refining is enjoying a free R factor of 18 but still
suffers from mystery density that nothing in the crystallization
an idea of the size.
http://www.msf.bio.ic.ac.uk/images/puzzle/puzzle2.png
http://www.msf.bio.ic.ac.uk/images/puzzle/puzzle3.png
Happy guessing!
Andreas
--
Andreas Förster
Crystallization and Xray Facility Manager
Centre for Structural Biology
On 19/06/2013 6:44, jlliu liu wrote:
I am sure if others have the similiar experience as me, sometimes when I
launch pymol and coot, I got the reversed stereo view which is pretty
annoying. I am using the ASUS VG278H LCD monitor... Thanks in advance
for your advice.
--
Andreas Förster
Occasionally given to losing extremities.
is that a good thing?
Andreas
On 02/05/2013 11:10, Phil Evans wrote:
Reference:
Gibbons, S. (1932) Cold Comfort Farm, Longmans, London
On 2 May 2013, at 11:07, Roberto Battistutta roberto.battistu...@unipd.it
wrote:
Hi everyone,
just a
the python source code when it was running CentOS 6.3, could
this be a problem?
Zhijie
--
Andreas Förster, Research Associate
Paul Freemont Xiaodong Zhang Labs
Department of Biochemistry, Imperial College London
http://www.msf.bio.ic.ac.uk
Dear all,
the recent advertisement for a postdoc position in the Freemont/Zhang
labs at Imperial had a small error in the job code needed to find it
online. The correct code is
NS 2013 047 IL
Use it at http://www3.imperial.ac.uk/employment (Job search) to apply
for the position. Closing
Ah, I see. This was part of update 10. Thank you.
Andreas
On 16/01/2013 2:51, Qixu Cai wrote:
Dear Andreas Förster,
You can use ccp4um (ccp4 update manage) to update CCP4 from command line.
Best wishes,
Q. Cai
--
Andreas Förster, Research Associate
Paul Freemont
/bin/update' removed
... file '/csb/soft/Linux64/share/ccp4-6.3.0/lib_exec/update' removed
... file '/csb/soft/Linux64/share/ccp4-6.3.0/lib_exec/_update' removed
... directory '/csb/soft/Linux64/share/ccp4-6.3.0/lib_exec' removed
some more blah blah)
--
Andreas Förster, Research
you need to be
100% unambiguous.
Cheers,
Tim
--
Andreas Förster, Research Associate
Paul Freemont Xiaodong Zhang Labs
Department of Biochemistry, Imperial College London
http://www.msf.bio.ic.ac.uk
difference between enabling/disabling map sharpening?
Cheers,
Rob
--
Andreas Förster, Research Associate
Paul Freemont Xiaodong Zhang Labs
Department of Biochemistry, Imperial College London
http://www.msf.bio.ic.ac.uk
break, but no maps
are displayed. This is independent of the sharpening factor I choose
(between 5 and 60).
Thanks for your help.
Andreas
--
Andreas Förster, Research Associate
Paul Freemont Xiaodong Zhang Labs
Department of Biochemistry, Imperial College London
.
Andreas
--
Andreas Förster, Research Associate
Paul Freemont Xiaodong Zhang Labs
Department of Biochemistry, Imperial College London
http://www.msf.bio.ic.ac.uk
attachment: backgroundSpots.png
Mac OSX because of Time Machine, Illustrator and crystallographic
software in one happy box. XP on a Virtual Box for emergencies (SAXS,
AUC and ITC programs).
Though with Microsoft and Apple both pushing towards gestures, fingertip
interaction and tablets, Linux will be the only option for
Dear all,
ok, never mind. I defined either peptide conformation as part of the
protein it binds to and applied NCS to that.
Should have thought of that before sending out the question.
Andreas
--
Andreas Förster, Research Associate
Paul Freemont Xiaodong Zhang Labs
way of dealing with this situation?
Thanks.
Andreas
--
Andreas Förster, Research Associate
Paul Freemont Xiaodong Zhang Labs
Department of Biochemistry, Imperial College London
http://www.msf.bio.ic.ac.uk
Dear Gerard,
inside Germany it's apparently called German Humour. There's a
Wikipedia entry for that as well. Go figure:
http://en.wikipedia.org/wiki/German_humor
Andreas
(still living on Sunday time)
On 02/04/2012 4:03, Gerard DVD Kleywegt wrote:
Dear Manfred,
Outside Germany, such
That's pretty funny, isn't it?
Andreas
On 02/04/2012 6:52, Jacob Keller wrote:
Sorry to beat a dead horse, but:
* *Antiwitz* (/anti-joke/): A short, often absurd scene, which has the
recognizable structure of a joke, but is illogical or lacking a
punch-line.
Example: /Two
, or Chrome using a Mac with OS
10.6.8.
David Mueller
--
Andreas Förster, Research Associate
Paul Freemont Xiaodong Zhang Labs
Department of Biochemistry, Imperial College London
http://www.msf.bio.ic.ac.uk
it in my
dining room if I can get it in the door. Any suggestions would be
appreciated.
Cheers,
Katherine
--
Andreas Förster, Research Associate
Paul Freemont Xiaodong Zhang Labs
Department of Biochemistry, Imperial College London
http://www.msf.bio.ic.ac.uk
won't let you trash documents
The operating system for the nanny state?
http://www.reghardware.com/2011/09/07/apple_mac_os_x_lion_the_nanny_os/
One of the reasons why I'm sticking with Snow Lepoard for now
Regards,
Peter.
--
Andreas Förster, Research Associate
Paul Freemont
does not show anything, but the binding constant
is really strong? Or vice versa, the binding is completely
undetectable, but the functional assay shows something?
JPK
--
Andreas Förster, Research Associate
Paul Freemont Xiaodong Zhang Labs
Department of Biochemistry, Imperial
problems are very rare, but if you run into strange behavior, don't
rule out encryption as a possible cause.
-Eric
--
Andreas Förster, Research Associate
Paul Freemont Xiaodong Zhang Labs
Department of Biochemistry, Imperial College London
http://www.msf.bio.ic.ac.uk
/ccp4-6.2.0-c5/ccp4i/bin/loggraph line 5)
--
Andreas Förster, Research Associate
Paul Freemont Xiaodong Zhang Labs
Department of Biochemistry, Imperial College London
http://www.msf.bio.ic.ac.uk
to open the pdb file with PyMOL and click on the ends, but a
script/command would be much quicker.
Thanks.
Andreas
--
Andreas Förster, Research Associate
Paul Freemont Xiaodong Zhang Labs
Department of Biochemistry, Imperial College London
http://www.msf.bio.ic.ac.uk
PRO 21
SER 36 THR 28 TRP 5 TYR 13
VAL 26 HEM 0 WAT 0 SUL 0
END 0 DUM 0 Other 6
HTH
Martyn
On Wed, 2011-08-10 at 17:24 +0100, Andreas Förster wrote:
Dear all,
how do you extract segments from a pdb file, so that from an input pdb
file you
, so I
moved
it to /path/to/ActiveTcl-8.4/bin
10. edited 1 line in ccp4.setup-bash (setenv CCP4I_TCLTK
/path/to/ActiveTcl-8.4/bin/)
11. opened a new terminal window ccp4i works
--
Andreas Förster, Research Associate
Paul Freemont Xiaodong Zhang Labs
Department of Biochemistry
the
exact same install method and it works (and using the install.sh from
arp_warp_7.1/ works too), so I wonder if something changed with RHEL6 that
might be causing problems?
Anyone have any suggestions?
Thanks!
Jonathan
--
Andreas Förster, Research Associate
Paul Freemont
for such problems which have routinely been practiced
in their lab
Also what is a good storage condition for the excess complex that you
want to use later?
I would really appreciate any suggestion,help, direction.
Thanks
ivan
--
Andreas Förster, Research Associate
Paul Freemont
, living or dead, is purely coincidental.
**
--
Andreas Förster, Research Associate
Paul Freemont Xiaodong Zhang Labs
Department of Biochemistry, Imperial College London
http://www.msf.bio.ic.ac.uk
--
Andreas Förster, Research Associate
Paul Freemont Xiaodong Zhang Labs
Department of Biochemistry, Imperial College London
http
, but not
natively on Linux
- mutate and regularize geometry in coot
- phenix.pdbtools from the command line (might be able to minimize only
part of the model)
Andreas
--
Andreas Förster, Research Associate
Paul Freemont Xiaodong Zhang Labs
Department of Biochemistry, Imperial
--
Andreas Förster, Research Associate
Paul Freemont Xiaodong Zhang Labs
Department of Biochemistry, Imperial College London
http://www.msf.bio.ic.ac.uk
Dear all,
I'm trying to create some space on our server and want to compress all
x-ray data files. I'm wondering what extensions I should search for.
mccd and img come to mind easily. What other extensions are commonly used?
Thanks.
Andreas
--
Andreas Förster, Research
is economizing disk space.
Thanks.
Andreas
--
Andreas Förster, Research Associate
Paul Freemont Xiaodong Zhang Labs
Department of Biochemistry, Imperial College London
http://www.msf.bio.ic.ac.uk
replacement. And both structures have
much different, especially in B chain. If my structure is a new one?
thank you for help.
--
Andreas Förster, Research Associate
Paul Freemont Xiaodong Zhang Labs
Department of Biochemistry, Imperial College London
http
85kDa.Our funds are
somewhat limited.
Thanks in advance.
Rex Palmer
Birkbeck College, London
RexPalmer2010.homestead.com
--
Andreas Förster, Research Associate
Paul Freemont Xiaodong Zhang Labs
Department of Biochemistry, Imperial College London
http
place (some file
server that's periodically backed up) and let users browse through all
the collected data of the lab with minimal effort later.
I doesn't seem too hard to implement this, which is why I'm asking if
anyone has done so already.
Thanks.
Andreas
--
Andreas Förster
.
Andreas
On 23/07/2010 11:54, Andreas Förster wrote:
Dear all,
the other day I obtained SAXS data from which a low-resolution
structural model was calculated. The model is simpler/less complex than
one of the same protein that we obtained with cryo-EM.
Is there a way to estimate theoretical SAXS data
understand that there would be a huge amount of handwaving
involved, but it might help us reconcile our models.
--
Andreas Förster, Research Associate
Paul Freemont Xiaodong Zhang Labs
Department of Biochemistry, Imperial College London
http://www.msf.bio.ic.ac.uk
that accurately but affordably makes
N-terminal sequencing ?
Thanks a lot in advance to everybody.
Best regards,
Xavier
--
--
Andreas Förster, Research Associate
Paul Freemont Xiaodong Zhang Labs
Department of Biochemistry, Imperial College London
http://www.msf.bio.ic.ac.uk
glxgears, it
only shows about 1400 FPS. If I open pymol, I can actually see the
images are flashing. Does anyone know why? Thanks a bunch.
Rui
--
Andreas Förster, Research Associate
Paul Freemont Xiaodong Zhang Labs
Department of Biochemistry, Imperial College London
reboot of the machine...
Cheers,
Serge.
Le 15 févr. 2010 à 10:44, Andreas Förster a écrit :
Hey Rui,
for what it's worth, I had a very similar problem. I upgraded a MacBook
Pro to OSX SP6 and got extra-slow graphics and a wildly flickering PyMOL
window - only on the laptop screen, though
: +48-61-8520532
Polish Academy of Sciences e-mail: wojt...@ibch.poznan.pl
Noskowskiego 12/14 www: www.man.poznan.pl/~wojtekr/
61-704 Poznan, Poland
--
--
Andreas Förster, Research
- installed version is 5.5.0109
Checking refmac5 version number - OK
if: Badly formed number.
--
Andreas Förster, Research Associate
Paul Freemont Xiaodong Zhang Labs
Department of Biochemistry, Imperial College London
http://www.msf.bio.ic.ac.uk
On 4 Jan 2010, at 11:15, Andreas Förster wrote:
Dear all,
I downloaded ARP/wARP 7.1 from EMBL-Hamburg and executed ./install.sh. All tests pass up
to and including refmac version check (see log below). After that, a Badly formed
number in an if test. What could be the issue?
The system
. Perhaps this is a message from Arp/wArp? I don't know.
But having recently refined several I2 structures in refmac,
I can attest that it works fine in recent versions.
Ethan
--
Andreas Förster, Research Associate
Paul Freemont Xiaodong Zhang Labs
Department of Biochemistry
I was so looking forward to being able to report that Apple's recent 600
MB bugfix had got the jitters out of PyMOL on an external screen, but
no. It still flickers like a German disco in the 90s when I ray trace.
X11 2.4. should be coming out soon. There's always hope.
Andreas
Engin
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