Re: [easybuild] Error Failed to chmod/chown several paths

Can you send all the records? Process fails installing GCCcore No such file or directory: '/opt/apps/easybuild/build/GCCcore/11.3.0/system-system/gcc-11.3.0/gcc/testsuit Cheers Miriel El 6/13/2023 a las 4:57 PM, OSCAR AU ALVAREZ escribió: Dear Sirs, i am new using EasyBuild 4.6.2 to

Re: [easybuild] EasyBuild user survey

e survey will be available until Friday Jan 19th 2018. >> I will discuss the survey results during my presentation at the 3rd >> EasyBuild User Meeting [1]. >> >> >> regards, >> >> Kenneth >> >> >> [1] https://github.com/easybuilders/easybuild/wiki/3rd-EasyBuild >> -User-Meeting >> > > -- Martin Marcher *Immersive Consultant* http://martinmarcher.com Mobile/Cell: +43 / 660 / 62 45 103 <+436606245103> http://www.linkedin.com/in/martinmarcher UID: ATU68801424

Re: [easybuild] source files removed prematurely

Hi, Try with EASYBUILD_BUILDPATH=/dev/shm (or any other directory that is completely under your control). It might that the OS has some kind of job or inotify event that cleans /tmp from old files... /Martin On Wed, Jan 10, 2018 at 11:36 AM, John Donners <john.donn...@surfsara.nl>

Re: [easybuild] blender error instalation

Isn't that rather a bug in the easyconfig? If it is managed by EB it should use as many dependencies from it as possible or if that is unfeasible it should at least specify the correct OS dependencies... /Martin On Sat, Oct 7, 2017 at 8:15 PM, Paul Melis <paul.me...@surfsara.nl> wrote: &

Re: [easybuild] Introducing minimal toolchains & optarch changes in existing tree

ct choices (at least that is how I understand it). Also, I'm not aware of another place to set "global" compiler flags what I want applied. /Martin On Mon, Jul 31, 2017 at 11:16 AM Alvarez, Damian <d.alva...@fz-juelich.de> wrote: > Just 3 small comments: > > > > -If you are go

Re: [easybuild] Introducing minimal toolchains & optarch changes in existing tree

consider using > '--use-existing-modules' to avoid reinstalling software at the various > levels (more than is strictly necessary). > > On 25 Jul 2017 11:46 am, "Martin" <mar...@marcher.name> wrote: > >> Hi, >> >> Should I expect any trouble when making

[easybuild] Introducing minimal toolchains & optarch changes in existing tree

ing I've run a few naive tests and everything seems but any hints would be welcome Thanks, Martin -- -- http://www.xing.com/profile/Martin_Marcher http://www.linkedin.com/in/martinmarcher Mobil: +43 / 660 / 62 45 103 UID: ATU68801424 . . Ȉ̝͓̪̣̏̇̎̑̕͟ l͔̠͙̲͚͔̲̿̊͋̀͛͗̔̚o̢̤̺͙̺͂̎̓̑̊̏̓̾̈́̓v

Re: [easybuild] EB 3.0 messes with EasyConfigs?

Hi, Thanks. Perfect, you'll have to introduce fixes with a bit of delay otherwise we'll all get used to that speed and soon enough maintaining EB will be a full time job if it isn't already :) So my memory wasn't quite accurate, apologies! /Martin Kenneth Hoste <kenneth.ho...@ugent.be> s

[easybuild] EB 3.0 messes with EasyConfigs?

l too keen on messing things up now that users start to write easyconfigs and the first roots of "hey this is actually useful" start to show among people. Thanks, Martin -- -- http://www.xing.com/profile/Martin_Marcher http://www.linkedin.com/in/martinmarcher Mobil: +43 / 660 / 62 45

[easybuild] Split Source Files/Unknown file type

me handle this more generally with postinstallcmds or something similiar? /Martin -- -- http://www.xing.com/profile/Martin_Marcher http://www.linkedin.com/in/martinmarcher Mobil: +43 / 660 / 62 45 103 UID: ATU68801424

Re: [easybuild] How to build modules compiled for different hardware architectures?

ill share any results. Most likely this adventure will simply teach me all the things I did wrong until now and then I'll go back to whatever the EB defaults are after finding out about that :) /Martin -- -- http://www.xing.com/profile/Martin_Marcher http://www.linkedin.com/in/martinmarcher Mobil: +43 / 660 / 62 45 103 UID: ATU68801424

Re: [easybuild] How to build modules compiled for different hardware architectures?

became a better place because of EB and definitely do NOT want to go back to where I was before :) /Martin On Tue, Oct 4, 2016 at 10:06 AM Kenneth Hoste <kenneth.ho...@ugent.be> wrote: Hi Martin, On 30/09/16 18:55, Martin wrote: I think this is a recurring question. My impression

Re: [easybuild] How to build modules compiled for different hardware architectures?

l for most people. When I do a rollout at my current client it works only on half the nodes due to illegal instruction errors. /Martin On Fri, Sep 30, 2016 at 11:09 AM Jack Perdue <j-per...@tamu.edu> wrote: > I like Pablo's trick of checking arch before building. Good idea in my > bo

Re: [easybuild] EB 2.9.0: Irresolvable dependencies for Python 3.5.2

On Thu, Sep 29, 2016 at 11:23 AM Ole Holm Nielsen < ole.h.niel...@fysik.dtu.dk> wrote: > I'm referring to our own internal documentation: How may we ever > remember how to build a specific application module or a toolchain, if > we don't have an easyconfig file and don't remember some specific >

Re: [easybuild] EB configuration file location on multimode cluster

We are rolling out a central /etc/profile.d/... file that exports the relevant EASYBUILD_ variables. Out method of choice is currently puppet but we are thinking about taking the intermediate of building a SiteEB module that does this (so "ml load SiteEB" instead of "ml load EasyBuild"). That way

[easybuild] Google Searchable Mailing List

Hi, Is there a way to easily find things via Google for the EB mailing lists? It looks like none of the archives are indexed and I'm getting a 500 when trying to use the search field from https://lists.ugent.be/wws. /Martin -- -- http://www.xing.com/profile/Martin_Marcher http

Re: [easybuild] Gentoo ebuild to EasyBuild conversion

Hi Fotis, Fotis Georgatos wrote: Hi Martin, On Jul 12, 2016, at 7:08 PM, Martin MOKREJŠ <mmokr...@gmail.com> wrote: Finally, I discovered Gentoo::RAP which has a bit cryptic documentation and the table at the top of thehttps://wiki.gentoo.org/wiki/Prefix/libc page drives me always

Re: [easybuild] Sharing Installation between EL6/EL7

lt;kenneth.ho...@ugent.be> wrote: > Hi Martin, > > We rebuild all software for each different OS/arch combo (where arch is > something like sandybridge, haswell-ib, etc.). Architecture/Optimization is not the issue here, rather the speed of delivery and overhead of the install.

[easybuild] Gentoo ebuild to EasyBuild conversion

foresee some difficulty because there can be classes inherited in the ebuild files, complicating the conversion. Also syntax (EAPI) is changing time to time. Thank you, Martin P.S.: Do not confuse official Gentoo portage tree which has far less packages, the packages in the overlay are of more

Re: [easybuild] [ANN] EasyBuild v2.8.0

Thank you so very, very much! (I'm tempted to use all caps and tons of exclamation marks here) On Wed, May 18, 2016 at 6:39 PM Kenneth Hoste wrote: > * significant performance improvements of EasyBuild itself, thanks to > code refactoring [2] and caching of module

Re: [easybuild] downloading jdk automatically

rk without additional options. As per "recommended usage": Once the easyconfig works I usually just place the file directly in /apps/proc/easybuild/sources without even taking the subdirectories into consideration and that also works without any additional effort on my side. Best, Martin

Re: [easybuild] downloading jdk automatically

To my knowledge Ward is correct. You might search the interwebs for various solutions to the URL. I usually simply download it but I found the actual culprit is that easybuild doesn't manage the sources in terms of it doesn't place them in the sources directory configured if it can find it in the

Re: [easybuild] Building a life sciences sub-community and citation practices

, at least in my opinion Best, Martin On Wednesday, 17 February 2016, McGough, Benjamin E <bmcgo...@fredhutch.org> wrote: > We have begun to use EasyBuild to replace our manual build process for > scientific software. As we have learned more and more about EasyBuild, a > couple of

[easybuild] VTK problem's

Hello, We have a little HPC system in our university with Debian 8 and I'm tried to install VTK-5.10.1-goolf-1.4.10.eb. I tried install this in Debian 8 and CentOS 7 and in both case I receive the same error. I used other toolchains how goolf-1.5.14 and goolf-1.7.20 with the same errors. In

[easybuild] [OT] Easybuild usage among Top500/General Adoption

t you know of and have sources to link to. I'm trying to sell this to management at a current client and these kind of numbers are always nice to have on slide decks. I'm happy to use as much input as possible and will try to at least consolidate the numbers if I'm not allowed to publish the slide deck

Re: [easybuild] Upgrading easybuild from 2.3 to 2.4

t;--from-pr" (which already is remote) but to also kind of "open anything" Or is that too much of a a "curl http://example.com/installer | /bin/bash"? /Martin On Tue, Dec 1, 2015 at 4:22 PM, Jack Perdue <j-per...@tamu.edu> wrote: > Howdy Joachim, > > If y

Re: [easybuild] Sanity check in python lib installation

. Not like you have to specify a full program run with input and output and expected output. Please don't make it optional /Martin On Thu, Nov 19, 2015 at 9:04 AM, Stolpe, Oliver <oliver.sto...@bihealth.de> wrote: > Hello Kenneth, > > I found it irritating because before I had not d

Re: [easybuild] Lmod Hands on @ TACC Booth Nov 18 2:00-3:30

will the talks be recorded and/or will you make the slides available on speakerdeck or slideshare? Thanks, Martin On Thu, Nov 12, 2015 at 11:44 PM, Robert McLay <mc...@tacc.utexas.edu> wrote: > I will be giving the 5th Annual Lmod Booth BoF at SC 15. This year > Kenneth Hoste

Re: [easybuild] cannot build old GCC on recent Ubuntu

ly* rely on this to be covered by the "reproducible build" argument that comes up every other thread. So what if I decide to switch distros or create another cluster that replaces the current one, shouldn't I be able to rebuild the stuff without needing to worry about the underlying distribu

Re: [easybuild] Sourceforge download

to Arnau for beating me to it :) best, Martin Files are attached On Wed, Oct 7, 2015 at 5:11 PM, Kenneth Hoste <kenneth.ho...@ugent.be> wrote: > Why the $BOOST_ROOT, and not just use > --configopts="--with-boost=$EBROOTBOOST" ? > -- http://www.xing.com/pr

Re: [easybuild] Sourceforge download

If you go thru creating a BOOST_ROOT shouldn't you do this also: configopts = '--with-boost=$BOOST_ROOT' /Martin On Wed, Oct 7, 2015 at 10:49 AM, Niek de Klein <niekdekl...@gmail.com> wrote: > Hi Arnau, > > Here is the easyconfig file I have but it is not working yet because i

Re: [easybuild] Incompatibilities with different CPUs

work. Please if you can post the slides somewhere, references like these always help then I can say: "Look guys, these people have been doing it for years and it works. Why not just try it?" :) /Martin On Tue, Jul 14, 2015 at 6:05 PM Pablo Escobar Lopez < pablo.escobarlo...@unibas.ch&

[easybuild] Incompatibilities with different CPUs

Any thoughts would be appreciated. /Martin -- -- http://www.xing.com/profile/Martin_Marcher http://www.linkedin.com/in/martinmarcher Mobil: +43 / 660 / 62 45 103 UID: ATU68801424

Re: [easybuild] 2015b common toolchains

The issue seems to be exactly what I'm talking about. I'll take back anything that has any implications for foss/2015b and start confusing people in issue#1689 (once I read up on it) :) On Fri, Jun 19, 2015 at 1:10 PM Kenneth Hoste <kenneth.ho...@ugent.be> wrote: > Hi Martin, > >

Re: [easybuild] 2015b common toolchains

hese tools are not technically required but I found that a lot of users expect the tools to simply be available and in a working state. If that opens a a completely different can of worms please feel free to delay this topic until foss/2015b is done and another solution can be discussed. /Marti

Re: [easybuild] How to deal with dependencies for R: revolutionary R

hat (might also be nice for PyPi, CPAN, ...). Once the sources are at the local site I (ay least) have no one to blame but myself... /Martin On Wed, Apr 1, 2015, 14:42 Jens Timmerman <jens.timmer...@ugent.be> wrote: > Hi all, > > I just came about revoultionary R, which takes

Re: [easybuild] How to deal with dependencies for R

s well enough for me to worry about these Luxury problems) /Martin On Tue, Mar 31, 2015 at 6:15 PM Martin <mar...@marcher.name> wrote: > Hi, > > Yes I know about -k it just seems so cumbersome to do that :( > > The combination of a broken corporate proxy and files that go missi

Re: [easybuild] How to deal with dependencies for R

Hi, Yes I know about -k it just seems so cumbersome to do that :( The combination of a broken corporate proxy and files that go missing really makes this a mess (for me, EB itself is great, I just have to suffer the slow Enterprise Death). I'll look into the script, thanks. Martin On Tue, Mar

Re: [easybuild] Problem with Python installation

-easyconfigs/issues/426 and corresponding pull requests. Cheers, Martin On 2/10/13 5:54 AM, Toon Verstraelen wrote: Hello, When I try to install Python (Python-2.7.3-goolf-1.4.10.eb), eb crashes on one of the extensions: python-lockfile. The downloads section of that project is apparently no longer

Re: [easybuild] toolchain versions

I don't think anybody from Auckland registered so far. I was at SC'12 and heard about the wonderful world of EasyBuild in the Python User Group meeting, perhaps from you :) Cheers, Martin On 20/09/13 6:38 PM, Kenneth Hoste wrote: PS: Any chance you and your colleague will be attending SC'13