External Email - Use Caution
Hello Ashesh,
You need to install the "gdebi" command on your Ubuntu machine.
Then download and install the libpng12 package from,
http://se.archive.ubuntu.com/ubuntu/pool/main/libp/libpng/libpng12-0_1.2.54-1ubuntu1_amd64.deb
Then install that
External Email - Use Caution
Hello Jon,
Looks like you are already running with -debug and -allowcoredump option, and
the shell limits do not look like they are too small to allow the coredump to
be written. I don't know offhand if that coredump option causes a file to
be
External Email - Use Caution
Mac OS comes with perl 5.18. The moduleMNI/Startup.pm is not part
of standard perl, and so it is provided in the freesurfer distribution.
When you source either the FreeSurferEnv.csh or FreeSurferEnv.sh script the
environment variable MNI_PERL5LIB
External Email - Use Caution
Hello Jon,
Can you get any stack or backtrace information after the segfault occurs ?,
e.g., Mac OS has the option to display the crash report with a trace. On
Linux you could run thru gdb and get a back trace. This would help
us to see where the
External Email - Use Caution
Hello Christian,
To build Freesurfer e.g., on CentOS7, we use rev 4.8.5 of gcc, g++ and
gfortran. You can tell cmake what compilers to use on the command line
with CC=path/gcc CXX=path/g++
FC=path/gfortran If you need to specify the gfortran
External Email - Use Caution
Hello Jon,
Since trac-all is a tcsh script, you could try prefacing it with "tcsh -x" to
get extra output about what it is doing, i.e.,
$ tcsh -x trac-all rest of args...
- and then look thru the trac-all output to see where it actually runs a
External Email - Use Caution
Hello Christian,
Allow me to suggest that you try following the instructions for the Fresrufer
cmake build located here, http://freesurfer.net/fswiki/CMake
Besides the option to build the 3rd party packages with build_packages.py
script, you can
External Email - Use Caution
Hello Christian,
When a test fails, it should leave behind a log in the subdir for the command,
e.g., if the test for ./mri_aparc2aseg fails, then there should be a
/mri_aparc2aseg fails,/test_mri_aparc2aseg.log to look at. But you will
need a
External Email - Use Caution
Hello Kazuhiro,
With the old configure/automake tools, I used the following configure command
on a CentOS7 machine (release 7.4.17-8) to build with the 5.0.35 Cuda
distribution with the CentOS6 packages archive. (My cuda 5 distribution
was
External Email - Use Caution
Hello Emma,
We're taking a look at those links which seem to not be working right now, so
stay tuned.
On Nov 5, 2018, at 05:30, Bunting, Emma e.bunting...@ucl.ac.uk
wrote:https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Data
External Email - Use Caution
Hello Zainab,
The first 2 commands you list are,
export FREESURFER_HOME=/usr/local/freesurfersource
$FREESURFER_HOME/SetUpFreeSurfer.sh
and the output from the source command shows you what has been setup in
your environment...
FREESURFER_HOME
External Email - Use Caution
Hello Baxter,
The daily/nightly builds happen at around midnight, so any changes made
today won't get built until midnight. There should be a
new build tomorrow unless something fails the build.
Baxter P. Rogers
External Email - Use Caution
Hello Knut,
You might be better off using the gcc 4.8 compilers on Ubuntu 18 which you can
install with$ sudo apt-get install gcc-4..8 g++-4.8 gfortran-4.8
Then on your cmake command line you could set those before the actual cmake
command. I've
External Email - Use Caution
Unless you turn off SIP, both DYLD_LIBRARY_PATH and DYLD_FALLBACK_LIBRARY_PATH
are always ignored now at run time (since Mac OS 10.11, El-Capitan).I don't
think you should need to set those in order to run Freesurfer 6.0.0 release
binaries on a Mac
External Email - Use Caution
Hello,
I have not tried it, but it would not surprise me to see incomplete library
references when running the old freesurfer 5 binaries on the latest version of
Mac OS, i.e., Mac OS 10.14 (Mojave)
I would try to use the rev 6 release binaries for
External Email - Use Caution
Hello Joseph,
You can also try doing the cmake build via makefile.wiki found under the
section, "Complete Cmake Build with makefile wrapper” on the page
ttps://surfer.nmr.mgh.harvard.edu/fswiki/CMake
That will try and use curl to download 3rd party
External Email - Use Caution
Hello Maeve,
You can search for the package to install with apt-file, but you may need to
install that first, so try,
$ sudo apt install apt-file
$ sudo apt update
… now search for the package with that library name using apt-file
$ sudo apt-file
: Unable to locate package libQt5X11Extras.so.5E: Couldn't find any
package by glob 'libQt5X11Extras.so.5'E: Couldn't find any package by regex
'libQt5X11Extras.so.5'Am I missing another library? Thanks in advance!Best,M.On
Wed, 5 Dec 2018 at 15:32, fsbuild fsbu...@contbay..com
wrote:External
External Email - Use Caution
Hello Rashid,
I would start with getting a cmake command to succeed to try and do the
build. Try looking over the cmake build page here,
https://surfer.nmr.mgh.harvard.edu/fswiki/CMake
- where there is also makefile (makefile.wiki) you can
External Email - Use Caution
Hello Sarah,
If you can bring up a terminal with your freesurfer environment set, then
please try the following commands, i.e.,
$ cd $FREESURFER_HOME
$ cat $FS_LICENSE
output deleted
Without posting the contents of your license, I think the
ement")
Version 1.0 (February 2011)Is
this wrong? The rwx settings look correct.ThanksSarahOn Nov 20, 2018, at
2:52 PM, fsbuild fsbu...@contbay.com
wrote:External Email - Use
CautionHello Sarah,If you can
bring up a terminal with your freesurfer environment set, then please try the
followin
External Email - Use Caution
Hello Karin,
If you take a look at this page,
https://surfer.nmr.mgh..harvard.edu/fswiki/CMake; you should see there is
a link to a file makefile.wiki which you can download. Besides trying to
run the cmake command for you to help with building
External Email - Use Caution
Hello Alba,
As of Mac OS 10.11, El Capitan, DYLD_LIBRARY_PATH and
DYLD_FALLBACK_LIBRARY_PATH are ignored as environment variables at run time.
Same for all subsequent releases: Sierra = 10.12; High Sierra = 10.13;
Mojave = 10.14.
You could try
External Email - Use Caution
Hello Vittal,
Your output resembles the error from a previous post about running the old
Freesurfer 5.3 release on Ubuntu 16,
https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2016-May/045393.html
You can try running that command listed at
External Email - Use Caution
Hello Haoran,
You could try looking at your shell limits and see if the memory size is listed
as something other than “unlimited”.
In bash shell,
$ bash
$ ulimit -a
core file size(blocks, -c) 0
data seg size(kbytes, -d)
unlimited
scheduling
External Email - Use Caution
Hello Vin,
The latest/dev branch of freesurfer builds on Ubuntu 16 without cuda,
but I have not tried compiling it for cuda on 16.04. My understanding is
that cuda builds
are not officially supported. I would first make sure that
everything
External Email - Use Caution
Hello Daniel.
It looks like you need a slash in front of Volumes for the path after —I/Volumes
- R.
On Feb 13, 2019, at 14:44, Daniel Davidson Callow dcal...@umd.edu
wrote:External Email - Use
CautionHello,I am trying to run
dt_recon on my dtidata
External Email - Use Caution
Hello Rodrigo,
Did you download the tar file
freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz from this page, and
attempt to follow the steps below ?
https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall
If you do not have permission
External Email - Use Caution
… Correction - with the v switch “tar -xzvf” it is going to list every fileit
expands and then return to the “$” prompt.
- R.
On , at 18:11 1/28/2019, fsbuild fsbu...@contbay.com
wrote:External Email - Use
CautionHello Rodrigo,Did you
download
External Email - Use Caution
Hello Kelly,
Do you have libfreetype installed on your system (which defines that symbol)?
$ strings /usr/lib64/libfreetype.so.6 | grep -i ft_get_font_format
FT_Get_Font_Format
If not, you can install it with,
$ sudo yum install freetype.x86_64
External Email - Use Caution
Hello Jorge,
You can download a tar archive of the pre-built 3rd party packages with the
following command,
curl -O
http://surfer.nmr.mgh.harvard.edu/pub/data/fspackages/prebuilt/centos7-packages.tar.gz
- and the versions of the contained packages
External Email - Use Caution
Hello Steve,
We have run the freesurfer 6.0.0 release on Ubuntu 16 and 18 which should also
work in a VM.
You may have to install some packages in order to run freesurfer, especially
for the freeview program which uses various graphics packages,
External Email - Use Caution
Hello Wafaa,
I believe qdec runs as a 32 bit application. You may see Mac OS 10.14 put
up
a window warning that an application is not optimized for the system
and needs to be re-compiled by its developer; that means it is a 32 bit
app. While
External Email - Use Caution
Hello Shrabani,
It looks like you do not have tcsh installed on your machine to run recon-all
which is a tcsh script,
If you are using RedHat/CentOS linux,
$ sudo yum install tcsh
Fedora linux
$ sudo dnf install tcsh
Ubuntu/debian linux,
$ sudo
External Email - Use Caution
Hello John,
You might be able to tell from the log what directory recon-all was cd'd
into when the creation of the soft link failed. You could try to cd
there as your userid (which I assume you used to run recon-all), and see
if you can manually
External Email - Use Caution
Hello Caspar,
So are you saying that if you run directly from the terminal in bash (or maybe
in csh with % sign as prompt)
$mri_convert -i inputvolume.mgz--out_orientation LPS-iis .5
-ijs .5 -iks .5-vs 1.2 1.2 1.2
- that the command works, but it
External Email - Use Caution
Hello Caspar,
So far, I have not found a CentOS rpm with that 2.14 version of libcrypt, but
you can download the source from the GNU project and try building it on your
machine with the following steps.
- R.
1) Become root in your terminal window
External Email - Use Caution
Hello Lingyan,
You can download an updated Mac freesurfer distribution from the following
link,https://drive.google.com/file/d/1v2WwPg68id42NqfMeBTI3zijjto69_C1/view?usp=sharing
After the download, you can uncompress the freesurfer_Mac.zip archive and
External Email - Use Caution
Hello Gonzola,
I use a CentOS7 VM image (on virtualbox) originally downloaded from
osboxes.org. After downloading and bringing up the image, I installed
various packages for freesurfer. But apart from my image being CentOS7
(and not CentOS6), I
External Email - Use Caution
Hello JC,
Your machine could be missing the qt5 libraries/files.
On Ubuntu linux you can try installing them with,$sudo apt-get install
qt5-default qtcreatorlibqt5x11extras5-dev
On CentOS linux,$sudo yum install qt-create qt-config.x86_64$sudo
yum
External Email - Use Caution
Hello JC,
You can try installing the following,
$ sudo apt-get install qt5-default qtcreator
$ sudo apt-get install libqt5x11extras5-dev
Are you working on Ubuntu 18 ?
- R.
On Jul 12, 2019, at 22:29, Juan Rivas jcr...@gmail.com
wrote:External Email -
External Email - Use Caution
OK, please check to see if this directory exists,
$ ls /usr/local/freesurfer/bin/platforms
If it does exist, then please let us know what is there with a repply email.
But I expect that it does not exist and ls will report there is no such
platforms
External Email - Use Caution
Hello Marie,
Are you saying that it works to load or open a file in the freeview GUI, but
you see nothing ?
Maybe you could tell us if you are running on Linux or the Mac, and maybe the
version of the operating system, e.g., linux CentOS7, ubuntu,
External Email - Use Caution
Hello Zero,
It’s not clear from the photo what linux OS and version you are running, but on
CentOS to get the libpng12 system library, you will need root or sudo
privileges to install the packages,
$sudu yum install libpng12.x86_64
External Email - Use Caution
Did you use the Ubuntu package manager tools to install X and also a driver for
the graphics card? It may not work to download a driver from the NVIDIA
web site depending upon what is on your machine - or if it is not supported.
For X install you
External Email - Use Caution
Hello Zoe,
You should use the package install tools on Debian to install libpng (or any
other missing libraries) for your distribution.
On CentOS 7 you would do something like,
$ sudo yum install libpng12.x86_64 libpng12-devel.x86_64
But like Ubuntu
External Email - Use Caution
Yes, as Viviana said, you need to specify the path to the Applications folder
by using a leading slash “/“ character.
You can test that path /Applications/freesurfer/subjects is OK by opening the
terminal application and then typing at the dollar
External Email - Use Caution
Hello Vasudev,
I think in January of 2018 it was possible to build the development branch of
the freesurfer tree using cuda 5. But I believe that was the last version
we tried building the source with. We no longer support building with
cuda and
External Email - Use Caution
Hello An,
My understanding is that in Freesurfer 5 you need to have a file called
“.license” and it should be placed in the directory where you installed
freesurfer. That directory is also the path the variable $FREESURFER_HOME
points to.
So if
External Email - Use Caution
Hello An,
Try taking the attached file “license_5” and rename it to
“.license” Then put it under $FREESURFER_HOME so that you see it
when you issue the command,
$ ls $FREESURFER_HOME/.license
- R.
On Sep 4, 2019, at 22:50, fsbuild fsbu
External Email - Use Caution
Hello Tristan,
Please check to see that what is listed in the makefile.wiki under the section
for Ubuntu is installed on your machine. I would also try building with
the instructions in the makefile if you have not already done so; that works on
my
External Email - Use Caution
Hello,
On the Mac, we use homebrew to provide some libraries that freesurfer binaries
need to link against in order to run, seehttps://brew.sh/
Once you install homebrew you should have a “brew” command available in the
terminal window. Then to get
External Email - Use Caution
There should be a file there now, so please try it again.
- rob
On Sep 9, 2019, at 14:26, Rami Hamati rhama...@uottawa.ca
wrote:External Email - Use
CautionHello there,When
attempting to get the analysed functional data using the below command:wget
fsbuild fsbu...@contbay.com
wrote:External Email - Use
CautionThere should be a file
there now, so please try it again.- robOn Sep 9, 2019, at 14:26, Rami Hamati
rhama...@uottawa.ca
wrote:External Email - Use
CautionHello there,When
attempting to get the analysed functional data using the below
External Email - Use Caution
Hello JC,
My bad with the first command, try
$ cd /usr/local/freesurfer/bin
... try the next command w/o sudo first,
$ ln -s /usr/lib/x86_64-linux-gnu/qt5/plugins/platforms platforms
... if that works, then try running freeview again.
... if that fails
External Email - Use Caution
See if you have the following directory with the plugins libraries,
$ ls /usr/lib/x86_64-linux-gnu/qt5/plugins/platforms
There should be a libqxcb.so listed in that directory if you have them.
Also try setting the following in your environment
$export
External Email - Use Caution
Hello Robin,
I believe folks use the freesurfer binary archive expanded/installed on file
servers that are remotely mounted, e.g., thru NFS, so everyone can share a
common installation. IT/dev-ops can implement that in different ways,
e.g., maybe
External Email - Use Caution
Did you try,
$ ldd /usr/local/freesurfer/bin/freeview | grep not
?
- R.
On Jul 12, 2019, at 08:42, Juan Rivas jcr...@gmail.com
wrote:External Email - Use
CautionIt looks like freeview
is in: jcrn12@jcrn12-VirtualBox:~$
information.Thank you very much,JC.El lun., 15 jul. 2019
a las 12:50, fsbuild (fsbu...@contbay.com) escribió:Hello Juan,For
CentOS try:$ sudo yum install gcc-gfortran.x86_64… if that does not work then,$
sudo yum install libgfortran.x86_64For Ubuntu,$sudo apt-get install gfortranOne
thing you
you very much,JC.El lun., 15 jul. 2019
a las 12:50, fsbuild (fsbu...@contbay.com) escribió:Hello Juan,For
CentOS try:$ sudo yum install gcc-gfortran.x86_64… if that does not work then,$
sudo yum install libgfortran.x86_64For Ubuntu,$sudo apt-get install gfortranOne
thing you might want to try
External Email - Use Caution
Hello Sebastian,
Please download the zip archive from the following link,
https://drive.google.com/file/d/1w0vZyWTY0HrbcDiP1jWsmGl_GMUSh7tR/view?usp=sharing
Then expand and read the README.patch file and follow the instructions.
When you are done, you
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
fsbuildOctober 1, 2019 at 16:08
External Email - Use
CautionHello Takashi,
Did you create a login to the list
External Email - Use Caution
Hello Vasudev,
With the 6.0 source, you can use options to the configure command to point to a
coda distribution and try to build freesurfer.. See the post by user
buildqa at this
External Email - Use Caution
Hello Samer,
The git bash shell on Windows will not be sufficient to run
freesurfer programs on Windows. Freesurfer is supported on CentOs Linux,
Ubuntu Linux and MacOS. However, some folks use the Ubuntu
shell as supported on Windows 10. This
External Email - Use Caution
Hello Takashi,
Did you create a login to the list on this page,
http://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
- and then receive the email notification, and then did you do the confirmation
step?
- R.
On Oct 1, 2019, at 11:03, Yamada,
External Email - Use Caution
Hello Frederic,
Please verify that you tried the steps below. You could also try using an
email address you have not previously entered into the system.
- R.
- - - - -
I went to the following link,http://surfer.nmr.mgh.harvard.edu/registration.html
External Email - Use Caution
Hello hj23,
If you are running the 6.0.0 freesurfer Mac release, then you can try
downloading this patch. You will need to double click on the archive to
expand it and then follow the instructions in README.patch. I think you
will also need admin
External Email - Use Caution
Hello Pradyumna,
I have not read thru the mailing list posts so see what other comments there
may be about this, but the posted system
requirements,https://surfer.nmr.mgh.harvard.edu/fswiki/SystemRequirements- do
not mention anything like Xeon class
External Email - Use Caution
Hello Karsten,
I think the location for license.txt in the freesurfer 6 release needs to be
under $FREESURFER_HOME, ie., $FREESURFER_HOME/license.txt, and cannot be
relocated from there by an environment variable.. But you can try using a
soft link
External Email - Use Caution
Hello Paulo,
What is the location of the freesurfer license file (?), i.e., I would make
sure the freesurfer license file is under $FREESURFER_HOME and then see if you
get different results running the command.
Even with the license file though, I’m
$Id:
mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $reading from
sample-001.mgz...Segmentation fault (core dumped)(base)
root@clps-pb1:/var/tmp/f4#Ok, will you confirm Ubuntu 18 can not run Freesurfer
4?Thanks,PauloOn Thu, Nov 21, 2019 at 1:14 AM fsbuild
fsbu...@contbay.com
External Email - Use Caution
Hello CM,
We are looking at how Freesurfer can work with the new security and file system
changes added in Catalina (Mac OS 10.15). I am not aware of an issue if
Freesurfer had been installed on a machine running an older version of Mac OS,
e.g.,
External Email - Use Caution
Yes, you can disable the gatekeeper security software and allow software to be
installed anywhere. This may not be the best choice for everyone if you
prefer to have this security (or do not have sudo privs). Anyway, we
will endeavor to not require
External Email - Use Caution
Yes, you can disable the gatekeeper security software and allow software to be
installed anywhere. This may not be the best choice for everyone if you
prefer to have this security (or do not have sudo privs). Anyway, we
will endeavor to not require
External Email - Use Caution
Hello Adam,
Please check if you have a “freeview.bin” program.
$ which freeview.bin
If you get a path back with freeview.bin in it, e.g. something
like/usr/local/freesurfer/bin/freeview.bin
- then try the ldd command on freeview.bin,
$ ldd `which
External Email - Use Caution
Hello Adam,
I’m doing some work with a VirtualBox VM running Ubuntu 18.04 -but hosted from
Mac OS instead of Windows. I will install the 6.0.0 freesurfer release in
the Ubuntu VM and run some of the freeview command tests we use, but so far I
have
External Email - Use Caution
Hello Adam,
See if you can run the following command, and if it reports anything is not
found (you can cut and paste the command)
- R.
$ ldd `which freeview` | grep not
Adam RytinaOctober 18, 2019 at 14:31
External Email - Use Caution
Hello Adam,
It’s not clear to me that the vtk libs are the issue.
Please check that you setup your FREESURFER environment as listed on the
freesurfer help/wiki
pages,https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall
It looks like you would
the FS_LICENSE environment
variable to the path of license.txt
- R.
fsbuildNovember 15, 2019 at 03:25
External Email - Use
CautionHello Karsten,
I
think the location for license.txt in the freesurfer 6 release needs to
be under $FREESURFER_HOME, ie
External Email - Use Caution
Hello Sotiris,
My understanding is that ECC memory gives you something like a parity
check across memory writes/reads. Or there is some extra bit(s) in
hardware that contribute to being able to determine if the value
in memory to be read actually
External Email - Use Caution
Hello Mohammad,
Please tell us what version of linux you are running, e.g., Ubuntu 18, CentOS
7, etc.
- R.
Mohammad RashidOctober 6, 2019 at 17:15
External Email - Use
Caution
Hello all, I've looked
External Email - Use Caution
Hello Jonathan,
It could help to add -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON to the cmake
command line to see what the compiler is doing when you run make and see the
first instance of those errors, but
clearly something is not right with the linker
External Email - Use Caution
Hello Aditya,
We are aware of the security changes in Mac OS 10.15 such as
notarization whereby Apple has decided to extend security rules for
applications (*.app bundles) to command line tool/binaries. From my
reading of developer postings it is
External Email - Use Caution
Hello Leona,
What is the error that you are seeing?
Qdec is a 32 bit program (*not* 64 bit), so even Mac OS 10.14 (Mojave) may put
up a warning that it is not optimized and needs to be re-compiled, but it
should still run. It will not however run if
External Email - Use Caution
Hello Alex,
It looks like you need to install Xquartz on your Mac with the X Windows
libraries including libGLU.1.dylib.
Download from here, open and run the installer package.
https://www.xquartz.org/
- R.
On Feb 25, 2020, at 23:27, Lab of Autism
External Email - Use Caution
You also see a list of packages to install on the freesurfer wiki pages under,
https://surfer.nmr.mgh.harvard.edu/fswiki/BuildRequirements
- R.
On Feb 26, 2020, at 12:03, Tim Schäfer ts...@rcmd.org
wrote:External Email - Use Caution
Hi Tim,try:wget
External Email - Use Caution
Hello Ben,
For packages to install, see the following wiki page,
https://surfer.nmr.mgh.harvard.edu/fswiki/BuildRequirements
Usually to expand the freesurfer *.tar.gz archive under /usr/local, you would
need sudo/root privileges, e.g.
$ cd
External Email - Use Caution
I should have said at the end for installation under $HOME to set,
$ export FREESURFER_HOME=$HOME/freesurfer
- R.
fsbuildMarch 3, 2020 at 15:39
External Email - Use
Caution
Hello Ben,
For packages to install
External Email - Use Caution
Hello Phillip,
If you run the following command on that file - which is from the 6.0.0
freesurfer release,
$ file/Applications/freesurfer/tktools/tkregister2.bin
I think you will see that it reports it is a i386 binary - which is 32 bit -
and cannot
External Email - Use Caution
Hello Phillip,
If you run the following command on that file - which is from the 6.0.0
freesurfer release,
$ file/Applications/freesurfer/tktools/tkregister2.bin
I think you will see that it reports it is a i386 binary - which is 32 bit -
and cannot
External Email - Use Caution
Hello Shun,
I’ve had some issues with graphics with only 8G of RAM. After you account
for the OS and anything else running on the machine, 8G can put pressure on
available memory.
Dell, Apple, etc. have stock configurations for laptops with 16G RAM
External Email - Use Caution
Hello Amar,
You will probably need to install some software in Ubuntu in order to run
freeview (and other commands in the freesurfer distribution). I
would start with installing the list of packages with the "sudo apt-get
install" command for the
External Email - Use Caution
Hello Kirill,
Is the shared folder where the “ln -s” command is running to create a soft link
on a disk that is formatted to have a Windows file system, e.g., NTFS?
My understanding is that Linux/Unix style soft linking via the “ln” command
does
External Email - Use Caution
Hello Pascale,
Yes, that kind of symbol error has been posted before, and it can from the
version of the standard C++ (or C) libraries being too different on the machine
the binaries are running on - compared to the machine they were built on.
External Email - Use Caution
Hello Alek,
When you say you are running Ubuntu 14 via a Windows 10 PC, do you mean you are
running the add-on windows subsystem for linux (known as WSL) that allows you
run an Ubuntu shell on Windows 10? And then when you say you are
remotely
External Email - Use Caution
I will send it directly to your email in a minute.
R.
On Apr 14, 2020, at 16:53, sapere-a...@tuta.io
wrote:External Email - Use
CautionHi,the FreeSurfer Ubuntu
VirtualBox Virtual Machine asks for a password to log in (see the attached
image).I
External Email - Use Caution
Hello Vi,
I will send the password to your email.
- R.
On Apr 6, 2020, at 13:22, rudolfrentier 1q2s3c4f5t6h7m8k9...@gmx.net
wrote:External Email - Use Caution
Hi!I wanted to try out FreeSurfer and
followed the install guide
External Email - Use Caution
Hello Stephan,
There is some information here about packages to install in order to run
freesurfer - see highlighted "apt-get install" commands.
https://surfer.nmr.mgh.harvard.edu/fswiki/BuildRequirements
I think you will also need to install these
External Email - Use Caution
Hello Kristian,
I have been looking at this as well, and my understanding is things are not
configured “out of the box” for an X-Windows client like freeview running under
the Windows Linux subsystem to work with the 3rd party Xming software running
External Email - Use Caution
Hello Liam,
Have you tried following the “Setup Instructions”
under,https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall. ?
For the 6.0.0 release:
If you are on the Mac, running the .pkg installer should give you the
distribution under
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